EsuBft894_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft894_8a-0001
Unique NameEsuBft894_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_635contigScaffold_635:278557..283264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft894_8
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsTMhelix
Protein domainsSignalP-TM
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCoil
Protein domainsTRANSMEMBRANE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Length195
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_002390.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft894_8aEsuBft894_8aEctocarpus subulatus male Bft15bgeneScaffold_635 278557..283264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft894_8a-0001EsuBft894_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_635 279248..283065 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft894_8a-0001-exonEsuBft894_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_635 278557..279316 -
EsuBft894_8a-0001-exonagat-exon-98278Ectocarpus subulatus male Bft15bexonScaffold_635 279745..279948 -
EsuBft894_8a-0001-exonagat-exon-98277Ectocarpus subulatus male Bft15bexonScaffold_635 280349..280468 -
EsuBft894_8a-0001-exonagat-exon-98275Ectocarpus subulatus male Bft15bexonScaffold_635 281671..281715 -
EsuBft894_8a-0001-exonagat-exon-98279Ectocarpus subulatus male Bft15bexonScaffold_635 282179..282271 -
EsuBft894_8a-0001-exonagat-exon-98276Ectocarpus subulatus male Bft15bexonScaffold_635 282535..283264 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft894_8a-0001-exonagat-three_prime_utr-22834Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_635 278557..279247 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft894_8a-0001-cdsEsuBft894_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_635 279248..279316 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft894_8a-0001-exonagat-five_prime_utr-14803Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_635 283066..283264 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft894_8a-0001 ID=EsuBft894_8a-0001|Name=EsuBft894_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1952bp|location=Sequence derived from alignment at Scaffold_635:278557..283264- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCTCCTGTCTCCGCGCTGCCCCCTACGGTGCCCTAGCCCGTGTGTGTGAA
CAGCAAGGGAATCTCACAGAGGCAAGAACCGAGCCGCCCGTTTGCTCTAT
CCTGAGAGTCACGGGGGCATCTGCACACTCGTTGTTGACACAGCGTCCAG
CATCGTCAGATCGTTTCTGTGAATTCAAATTCGGCAAGCGACCACGACAA
TGTTGACGAGGTTGATGCTGTTGCTGGCGTTCCTCCACACCGCTTCTTCC
TGGAGCGCGACGGCCACCGCCGCCACCACCGTTGCCTTCAGCAGCCCTCC
CCGGATGTTGCTCTATTTCTCAACACTGACAAGCTCTCGAAGACACGGCG
GTCAGAAGCATCAAATCGACCCTGACAACAGCAGCAGCAGCAGCAGACAG
CCTTGGACACCGATGCGGCCACTGACTCGAGGGAGGGCAACATTCGCGTC
GCGCGCGGGGGAGCGAAGCTCAGCGACGCGCATGAGCAGTGCCCCTTCAG
GCGAAGGACGGCGTGAGGGAAATCGTGTCGTGGGCAGCATCGCTCGGGGT
GGCGACGTGGTAGCCTTCGTGGCGGCGGCGTGCTCAGCTTTCCCCAGTTG
CTCCTCCGCAGCAGCAGCGGCAGCAGCAGCCATCGTTGGGGAAGCGGGTG
GGTCGGAGATGGGTGCGAGGGTAGACCCCGCTGCTACGGCCTCTTTCGCC
GCTGTTGTGGTGGCCTTCGCGTTTCTCCAGTCGCGGATTCGAACCGCTGT
AAGAGCGCGAACGGCACGGAGGAACTACGAAGTTCTCTTCAAAGGGATGA
AAGCAAAGCAACTCGCCGGACAGGCGGACGAGAAGGAAGTGAAGCTGGTG
GAGGAACGGATGTCGCAGCTCCTTCAGGAGGAACAAGAGGCGAGAAAGGT
GGACATCTTCGGCATCCCGTTCAACTTAGTCATCCCCGACGGCGGGGCGG
GAGGGGAGCCGGGAACAGCCGCCAGGGAAGCGCAACAGGGTAGGAGCTCT
GGCAGGGGGGAGCTGGGGGACGGTGGTCGTGCTGCCGGGGAGGGCGGTCA
GCAGCAGCAGCAGCTTGGGATTCGCGAAACTATGAAGGCGAAAGCCGAGT
CGGACTTAAGAGGTAGAAAGGCGAGGGAGGAGGAAATGTCGACGGGGGCA
ACGCTCAAGGTGGCCGCGCTGTGGCTCGTGCTGATATCCCAGCTGTGGCT
ACTGGTGGTGCTGTGGAACGACCCAATGGGTCCCGCATCGTCGACCTTTC
TGCAAGACTGAGCGGGGCACGTTGGTTTTGTCTGTCGGTGTGAATAAGCG
GAGCTGTACCGGGTTCGTCAGTTGTTAGGTCGGAACAGAGTTGTGCGTGG
TGTGATGGGGAACAATAGTCCATGGAGACGGGTTGACGAAGATTGCAGTT
AGGATTTCATGGTCTGGTGCGCGTGTGTGTTCTCCAGGTTGGTTCAGCGC
TGAATAAATCGATTATTCGTACCGTTCTGCTGCATGGAGAGTTTTTGCAG
AGCGAGCACTGTTCTAGGTTCCCATTCGACACACTTCACTTGCGAGATTG
TCCAAGTCAACAGTGTGCGAATGCGATTCCCTAAGTTTGGCGGACATGAA
TCATCGGCACAAGAGGAAGAGACGTCACAAGAGGAAGCGACGTCACAAAG
ACTGTGTTTTGCGGAATCGATCGTCCTGTGTACAATCGCTACAGAACGAA
TGTAACATCGAGAGGCAGAGATAGGCGGTTGTAGGTACATGTCGTTTCTC
TGCGCAGAACTCATCCGGCAAAGCGTGGAGACGCGCGTCTCCTTGGGGTG
TACATTGCTGTTGAAGTCGAGAGGCAGCAAGAGCTCAAATTAGAGAGGGC
GAGTAGCTTCGCGTGTGCATATTGCGTTTTATTTTTGAAGCACGCCTCTT
GAGTAGCTTGATTGTCGTGTGAGAAGCGATCAAGATGTGAAAAGAACTCT
GA
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protein sequence of EsuBft894_8a-0001

>EsuBft894_8 ID=EsuBft894_8|Name=EsuBft894_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=353bp
MLTRLMLLLAFLHTASSWSATATAATTVAFSSPPRMLLYFSTLTSSRRHG
GQKHQIDPDNSSSSSRQPWTPMRPLTRGRATFASRAGERSSATRMSSAPS
GEGRREGNRVVGSIARGGDVVAFVAAACSAFPSCSSAAAAAAAAIVGEAG
GSEMGARVDPAATASFAAVVVAFAFLQSRIRTAVRARTARRNYEVLFKGM
KAKQLAGQADEKEVKLVEERMSQLLQEEQEARKVDIFGIPFNLVIPDGGA
GGEPGTAAREAQQGRSSGRGELGDGGRAAGEGGQQQQQLGIRETMKAKAE
SDLRGRKAREEEMSTGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTF
LQD
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mRNA from alignment at Scaffold_635:278557..283264-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft894_8a-0001 ID=EsuBft894_8a-0001|Name=EsuBft894_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4708bp|location=Sequence derived from alignment at Scaffold_635:278557..283264- (Ectocarpus subulatus male Bft15b)
CCTCCTGTCTCCGCGCTGCCCCCTACGGTGCCCTAGCCCGTGTGTGTGAA
CAGCAAGGGAATCTCACAGAGGCAAGAACCGAGCCGCCCGTTTGCTCTAT
CCTGAGAGTCACGGGGGCATCTGCACACTCGTTGTTGACACAGCGTCCAG
CATCGTCAGATCGTTTCTGTGAATTCAAATTCGGCAAGCGACCACGACAA
TGTTGACGAGGTTGATGCTGTTGCTGGCGTTCCTCCACACCGCTTCTTCC
TGGAGCGCGACGGCCACCGCCGCCACCACCGTTGCCTTCAGCAGCCCTCC
CCGGATGTTGCTCTATTTCTCAACACTGACAAGCTCTCGAAGACACGGCG
GTCAGAAGCATCAAATCGACCCTGACAACAGCAGCAGCAGCAGCAGACAG
CCTTGGACACCGATGCGGCCACTGACTCGAGGGAGGGCAACATTCGCGTC
GCGCGCGGGGGAGCGAAGCTCAGCGACGCGCATGAGCAGTGCCCCTTCAG
GCGAAGGACGGCGTGAGGGAAATCGTGTCGTGGGCAGCATCGCTCGGGGT
GGCGACGTGGTAGCCTTCGTGGCGGCGGCGTGCTCAGCTTTCCCCAGTTG
CTCCTCCGCAGCAGCAGCGGCAGCAGCAGCCATCGTTGGGGAAGCGGGTG
GGTCGGAGATGGGTGCGAGGGTAGACCCCGCTGCTACGGCCTCTTTCGCC
GCTGTTGTGGTGGCCTTCGCGTTTCTCCAGGTAAATGTTGTTCCGTCCCA
AACCCGGACACTCGACACATGTACTGCTGTAGATACGTATTACCCTCCGC
GGGAAGTGACAGATACGGGGCTCACGAACCCCGCGACTAACTTTTTTAGA
AGCCAAATCAACCATTCGACTAGTCAGCGCTGACTTGTTGTTGAATAGTT
TGATTTCGGGTTCTATGCATATAGACATTGGAAGCCTTGATCTCGGAGCT
CAACGAGAGCCCTGACTCGCTGCTACGTGTGCTTCCCATACAGTCGCGGA
TTCGAACCGCTGTAAGAGCGCGAACGGCACGGAGGAACTACGAAGTTCTC
TTCAAAGGGATGAAAGCAAAGCAACTCGCCGGACAGGTATGCGTGCAAAA
GCAACAAACGAAAAATCGAAATTCGTGTGTACGGTATGCTTCTGAAAGGG
CAGGAGCGAACGTACCACAAACGTTCCGCCCGACACTTGTGTTCCACTCC
AGCCAGTAAGAGGAGAGATGACACCCCCCCTTAAACTATTTTTAATCGAT
TTCTCCACAACCAAGCTTGTGCCAACACCGACAATGGCGGTTTCGGAAGC
ATCTCGCCGAGGGGTTTCCGTAAACGCATCGGGCTACCTCCGCACCCGCT
TTGTTGCGGAGACTACGAGCTTTGAAATTCGGCCTAAGGGGGGTCGCCTC
TTGCAGTACTATGATGTCATGCTTTGTCGAGTCCCCTCACGAACGCGGTC
TCTGGTGTTTTGTGCACATACAATCTCCGGAGTACGAACTGAGCCCAGCA
TGCCGTGCTTTGGAACAACCGTGGTTCTGGTTTCAACGACACCACGCAGG
CGGACGAGAAGGAAGTGAAGCTGGTGGAGGAACGGATGTCGCAGGTGTGT
GGGTGAAGACCAGCACATGGCACATGTTCCTGCCTTATGGTTCCGCACTG
TGTAAACCTTCCTCTTGTGACCCCGGCTGATACGTCAGGTAGATACGCCG
AAAGGCATGTAAACCGGCGCCAGAATGGATGGGGGCGAACACACATACTG
ACCGAAAGGACCGCACAGAATGAGAGGAGTAGATGTATTCCGCGTGTGGT
TGGGGGAGGGACAATCCACAGACGACAACTTGTCTACAGTACTTCGTACG
ACGGTAGGCTATCCAACATGTCGGCGTCCGAGCTTTTTTTTTCTTGACAT
GAATTGTGGCTTGGGGCATTCACACGCGTCGACTACAGGCAGCTTCACCA
CCGGCAACAGACGAGTGATGAGCTCACGGGACATTGCGCGTTAGTTTTAC
TCTATTCCGGGGTCGCACAGAGTCCGGTGAACTCACTGCGTGACAAACGA
TAAAAAGTTGCACGCTGACGAGGGATTCCGTCTGTGTTGCGTTCCGTTCC
TGGGTATCGTAGGTTGCAAGAGATATCACACCCGTTGGACCGATCTTCAA
AGCTCGATTACTCCGCCACGAAGAGGATGCCGAACTTGAAGTATACGTTT
TCGGAAAGCTCTCGACAAGACGGTTCCAACGCCGCCAGTTTCGACACGGT
AACTGCTTTTGCTGCCGAGACATCGAGTTGGTCCAGCGGGTGTGATATCT
TTTGCAACCTACGGCATTGATTTTTGAAGTAGAACGAGCCATTTTTGACA
TGTTGATGTGAACAGGTTCCAAGCAAGAAACTCACCCACGTCTGCGTGGA
GCTAGCGTCGTGAGCAGGCAGGCAGCAAAACCATTTGCCTGAGGCCTGTG
TCGCAATACACTCGGAGGTATTACTATTGTGACGAAAATCTCGTGTGCGT
TCATCGCGAAAACGCGTCTCGGTGACGGTCTCTCATCATCGTGTTATCCT
CACCAGATGCCAATCCCCATCTCCCTCCCTACAGAAATGCCAGCTTCGGT
TTAGTTGCCAACGCCAGGCATCGCGGGCAAAGAGACGCAAGTGCTTACCC
TTCTGAAATTCCCCCCCCCTGTTGCGACTGCCCCGTCCTCTCGAGGACGC
GGGGTCAATGGTCTAAGCGCTACGGCATGCAAGACATAAGGGTATGCTCC
CCCCCCCCTGAGCCGACTGGTTTACCTTCTCTGCATGCTTTCGTAGCTCC
TTCAGGAGGAACAAGAGGCGAGAAAGGTGGACATCTTCGGCATCCCGTTC
AACTTAGTCATCCCCGACGGCGGGGCGGGAGGGGAGCCGGGAACAGCCGC
CAGGGAAGCGCAACAGGTGTGGAGGCTGAGTGAGTCTACCGTAAGGATGC
GAGAGATCCCATGGGGGTGCAATCGATTTTTAAATGATTTCGTTCTGGAC
TTTATAGGAAGTATATGTATGCGGAATATCTATCCGAGTTTTTTCAAGTC
CCAGAATCGATTCCGCCGTCACCAATGTTTGCTTTCAAGTGCGGAGGAAT
ACCACTTTCCCGCTCATTTTACCCGTCGCGGCGTTACTTTGTTTCACCCT
TTCCGTGGTAGCGTTGAGCGTTGGCGGTAGGGTAGTTGCGCAAAATGCGG
GGGGAGGGTGTCATGGACCATCCGTACCCACCCGCGCTCCTGAACCCGGG
CTCTCATCGTGCGGGAGCGAGGGCTTTTCGTTCACGGCTTTCCATCTCAT
TCTTCTCCAAACGCAGGGTAGGAGCTCTGGCAGGGGGGAGCTGGGGGACG
GTGGTCGTGCTGCCGGGGAGGGCGGTCAGCAGCAGCAGCAGCTTGGGATT
CGCGAAACTATGAAGGCGAAAGCCGAGTCGGACTTAAGAGGTAGAAAGGC
GAGGGAGGAGGAAATGTCGACGGGGGCAACGCTCAAGGTGGCCGCGCTGT
GGCTCGTGCTGATATCCCAGGTAAAGTCTTCAGTCGACCGGTCTCTTTCT
TACTTTCCCCGCCCTCCTTCGGGCCCCCTCTTACCGTAGGTTGCATAAGA
TACCACACACCCTAGACCAATTTGTCAAAGCCCGGGTACTCCACAACGAG
GATGATGCCAACATCAAATTGTGCGTTTTCGGAAAGCTCTCGACGTAGAG
GCTCCAACATCACCATTCTCGGCACAGTCCCATGGTTGTGCTGCAGAGTA
ACCGAGCTTTGGAAACAGGTCCAGGGGGGTATCTTGTGCAACCTCTGGTA
CACGCAAACCTCGTCATGGCACCCGCCGTCTGGTTTCTCCACCTCCGCTG
CGCGCCTGTTCGCTCGGAAGCACGACCCCCCGCGTCTGTGCCAGCTCTCC
CGCCAGATGCCTTCTTATCAATCCTACCCCCCCCCTCCCCATCTGCAGCT
GTGGCTACTGGTGGTGCTGTGGAACGACCCAATGGGTCCCGCATCGTCGA
CCTTTCTGCAAGACTGAGCGGGGCACGTTGGTTTTGTCTGTCGGTGTGAA
TAAGCGGAGCTGTACCGGGTTCGTCAGTTGTTAGGTCGGAACAGAGTTGT
GCGTGGTGTGATGGGGAACAATAGTCCATGGAGACGGGTTGACGAAGATT
GCAGTTAGGATTTCATGGTCTGGTGCGCGTGTGTGTTCTCCAGGTTGGTT
CAGCGCTGAATAAATCGATTATTCGTACCGTTCTGCTGCATGGAGAGTTT
TTGCAGAGCGAGCACTGTTCTAGGTTCCCATTCGACACACTTCACTTGCG
AGATTGTCCAAGTCAACAGTGTGCGAATGCGATTCCCTAAGTTTGGCGGA
CATGAATCATCGGCACAAGAGGAAGAGACGTCACAAGAGGAAGCGACGTC
ACAAAGACTGTGTTTTGCGGAATCGATCGTCCTGTGTACAATCGCTACAG
AACGAATGTAACATCGAGAGGCAGAGATAGGCGGTTGTAGGTACATGTCG
TTTCTCTGCGCAGAACTCATCCGGCAAAGCGTGGAGACGCGCGTCTCCTT
GGGGTGTACATTGCTGTTGAAGTCGAGAGGCAGCAAGAGCTCAAATTAGA
GAGGGCGAGTAGCTTCGCGTGTGCATATTGCGTTTTATTTTTGAAGCACG
CCTCTTGAGTAGCTTGATTGTCGTGTGAGAAGCGATCAAGATGTGAAAAG
AACTCTGA
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Coding sequence (CDS) from alignment at Scaffold_635:278557..283264-

>EsuBft894_8a-0001 ID=EsuBft894_8a-0001|Name=EsuBft894_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1062bp|location=Sequence derived from alignment at Scaffold_635:278557..283264- (Ectocarpus subulatus male Bft15b)
ATGTTGACGAGGTTGATGCTGTTGCTGGCGTTCCTCCACACCGCTTCTTC
CTGGAGCGCGACGGCCACCGCCGCCACCACCGTTGCCTTCAGCAGCCCTC
CCCGGATGTTGCTCTATTTCTCAACACTGACAAGCTCTCGAAGACACGGC
GGTCAGAAGCATCAAATCGACCCTGACAACAGCAGCAGCAGCAGCAGACA
GCCTTGGACACCGATGCGGCCACTGACTCGAGGGAGGGCAACATTCGCGT
CGCGCGCGGGGGAGCGAAGCTCAGCGACGCGCATGAGCAGTGCCCCTTCA
GGCGAAGGACGGCGTGAGGGAAATCGTGTCGTGGGCAGCATCGCTCGGGG
TGGCGACGTGGTAGCCTTCGTGGCGGCGGCGTGCTCAGCTTTCCCCAGTT
GCTCCTCCGCAGCAGCAGCGGCAGCAGCAGCCATCGTTGGGGAAGCGGGT
GGGTCGGAGATGGGTGCGAGGGTAGACCCCGCTGCTACGGCCTCTTTCGC
CGCTGTTGTGGTGGCCTTCGCGTTTCTCCAGTCGCGGATTCGAACCGCTG
TAAGAGCGCGAACGGCACGGAGGAACTACGAAGTTCTCTTCAAAGGGATG
AAAGCAAAGCAACTCGCCGGACAGGCGGACGAGAAGGAAGTGAAGCTGGT
GGAGGAACGGATGTCGCAGCTCCTTCAGGAGGAACAAGAGGCGAGAAAGG
TGGACATCTTCGGCATCCCGTTCAACTTAGTCATCCCCGACGGCGGGGCG
GGAGGGGAGCCGGGAACAGCCGCCAGGGAAGCGCAACAGGGTAGGAGCTC
TGGCAGGGGGGAGCTGGGGGACGGTGGTCGTGCTGCCGGGGAGGGCGGTC
AGCAGCAGCAGCAGCTTGGGATTCGCGAAACTATGAAGGCGAAAGCCGAG
TCGGACTTAAGAGGTAGAAAGGCGAGGGAGGAGGAAATGTCGACGGGGGC
AACGCTCAAGGTGGCCGCGCTGTGGCTCGTGCTGATATCCCAGCTGTGGC
TACTGGTGGTGCTGTGGAACGACCCAATGGGTCCCGCATCGTCGACCTTT
CTGCAAGACTGA
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