EsuBft893_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft893_9a-0001
Unique NameEsuBft893_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_1228contigScaffold_1228:98671..99469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft893_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length66
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft893_9aEsuBft893_9aEctocarpus subulatus male Bft15bgeneScaffold_1228 98671..99469 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft893_9a-0001-exonagat-exon-26478Ectocarpus subulatus male Bft15bexonScaffold_1228 98671..99186 -
EsuBft893_9a-0001-exonEsuBft893_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_1228 99320..99469 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft893_9a-0001-exonagat-three_prime_utr-22819Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_1228 98671..99148 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft893_9a-0001-cdsEsuBft893_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_1228 99149..99186 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft893_9a-0001-exonagat-five_prime_utr-14791Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_1228 99348..99469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft893_9a-0001EsuBft893_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_1228 99149..99347 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft893_9a-0001 ID=EsuBft893_9a-0001|Name=EsuBft893_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=666bp|location=Sequence derived from alignment at Scaffold_1228:98671..99469- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTATTTTTATTATTTTGTTCGTCCTCCGACAATTAATTGCAGATAAATGC
AGACATACATAAAAAGTCGATCGAAAAGGCCGCCATTCCAAGCCAAATTA
ACTCGATGCCCAATAGCTAGGAATGTTTGCCTCTAAGTCAACAAAACTTA
TGAAAACGCTACAGCTGAACTCTAGGCACGAACCTTAGATGGAGAAAAAC
GAACAAAACCCCAACCTCATCCACCCGAAATCAAACAAAACTCGGCCCGG
TCTTCCCTGGTACCCCTGACACCGTATTGAACAGAAATCCGCTTTCCACC
GAAGTGGTTAGGTTAAAGCTGTCGCACGCATATTTCGGCGCGCAAAAGTC
TGTGCGGCATTGCTGATCGATATTGCCACCGGTCACACCAAGAGAGAAAC
ACCCGCCGTCTTGCTCTTTCTGAGGCAACCCCCACTCAAGCCCATGTTCC
CCCAGACCCCCGACACTGCCACCCCCTGTTCCCACTTCCTTGCCACCTGC
AACCACAAGGGCCAAGCCCTCCCCCCTCAGCACTCCCGACACCGTATCGA
ACAGAAATCCGCTTTCCACCGAAGTGGTTAGGTTAAAGCTGTCGCACGCA
TATTTCGGCGCACAAAAGTCTGTGCGGCATTGCTGATCGATATTGCCACC
GGTCACACCAAGAGAG
back to top

protein sequence of EsuBft893_9a-0001

>EsuBft893_9 ID=EsuBft893_9|Name=EsuBft893_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=21bp
MFASKSTKLMKTLQLNSRHEP
back to top

mRNA from alignment at Scaffold_1228:98671..99469-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft893_9a-0001 ID=EsuBft893_9a-0001|Name=EsuBft893_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=799bp|location=Sequence derived from alignment at Scaffold_1228:98671..99469- (Ectocarpus subulatus male Bft15b)
TTATTTTTATTATTTTGTTCGTCCTCCGACAATTAATTGCAGATAAATGC
AGACATACATAAAAAGTCGATCGAAAAGGCCGCCATTCCAAGCCAAATTA
ACTCGATGCCCAATAGCTAGGAATGTTTGCCTCTAAGTCAACAAAACTTA
GTGAAAACGCTACAGCTGAACTCTAGGCACGAACCTTAGATGGAGAAAAA
CGANGAAAAGGCCGCCATTCCAAGCCAAATTAACTCGATGCCCAATAGCT
AGGAATGTTTGCCTCTAAGTCAACAAAACTTAGTGAAAACGCTACAGCTG
AACTCTAGGCACGAACCTTAGATGGAGAAAAACGAACAAAACCCCAACCT
CATCCACCCGAAATCAAACAAAACTCGGCCCGGTCTTCCCTGGTACCCCT
GACACCGTATTGAACAGAAATCCGCTTTCCACCGAAGTGGTTAGGTTAAA
GCTGTCGCACGCATATTTCGGCGCGCAAAAGTCTGTGCGGCATTGCTGAT
CGATATTGCCACCGGTCACACCAAGAGAGAAACACCCGCCGTCTTGCTCT
TTCTGAGGCAACCCCCACTCAAGCCCATGTTCCCCCAGACCCCCGACACT
GCCACCCCCTGTTCCCACTTCCTTGCCACCTGCAACCACAAGGGCCAAGC
CCTCCCCCCTCAGCACTCCCGACACCGTATCGAACAGAAATCCGCTTTCC
ACCGAAGTGGTTAGGTTAAAGCTGTCGCACGCATATTTCGGCGCACAAAA
GTCTGTGCGGCATTGCTGATCGATATTGCCACCGGTCACACCAAGAGAG
back to top

Coding sequence (CDS) from alignment at Scaffold_1228:98671..99469-

>EsuBft893_9a-0001 ID=EsuBft893_9a-0001|Name=EsuBft893_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=66bp|location=Sequence derived from alignment at Scaffold_1228:98671..99469- (Ectocarpus subulatus male Bft15b)
ATGTTTGCCTCTAAGTCAACAAAACTTATGAAAACGCTACAGCTGAACTC
TAGGCACGAACCTTAG
back to top