EsuBft893_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft893_8a-0001
Unique Name	EsuBft893_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_1228	contig	Scaffold_1228:94383..96518 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft893_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	178
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft893_8a	EsuBft893_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_1228 94383..96518 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft893_8a-0001	EsuBft893_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_1228 95750..96355 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft893_8a-0001-exon	EsuBft893_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_1228 94383..94704 -
EsuBft893_8a-0001-exon	agat-exon-26477	Ectocarpus subulatus male Bft15b	exon	Scaffold_1228 95055..96518 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft893_8a-0001-exon	agat-three_prime_utr-22817	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_1228 94383..94704 -
EsuBft893_8a-0001-exon	agat-three_prime_utr-22818	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_1228 95055..95749 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft893_8a-0001-cds	EsuBft893_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_1228 95750..96355 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft893_8a-0001-exon	agat-five_prime_utr-14790	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_1228 96356..96518 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_1228:94383..96518-
coding sequence from alignment at Scaffold_1228:94383..96518-

spliced messenger RNA

>EsuBft893_8a-0001 ID=EsuBft893_8a-0001|Name=EsuBft893_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1786bp|location=Sequence derived from alignment at Scaffold_1228:94383..96518- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CATTTTGGATTCAGGAACGTCTCTCCCAAAAAGGGGTTGAGCTCAGTCTC
CCGAAATCCAAAGTGCTTTTCCCGGAAGGTCTTTGCATGTCCTCTTTGAC
AAATGGCGAACAGCAACAAACAGTCAGTTGACGAAAATTGGTCTGTCAGT
TGCTGAAGGTGGCATGCCAGTAGCCGGGATCCCAATAGGGACAGAAGAGG
TACAGAGAAATTTCGTTTCCAAATTCGCCCGTGGTGACCCGGCGGAAGTG
ATACTCCACCTGGTAACGCTTGACGACCCTCAAGCCAGCTATCAACTGCT
GCGTTTTTCTGGTGTGCCACGTTTGTTTCATCTGCTGAGGACGATTGCAC
CGTTTATCACCAACTCTGCCGCTAGAAAACATGACAACATGATGATGTGG
GCAATGAGCAAGATCGTCCTTGGCAAGATGGCCGACAGCATGAGAATACC
AACCGAGAAAGGAGTACGCGCAGACCCGACGAAGCGCGAGGAGGTAGATT
TCTTCAAAGGGACAGCTCGGGCACAGGTGCACCTATCCATGCGTGAAAGA
GGACTAGGAATCACGAGCAATGTTTTCATTCGAGAATCGGCTTTCGTGGC
AGGGCAAGCGCTGGTGTTCTCCAAGTCAGTGCAAGCATCGACAGGACACA
CAGTTGATCAATGTCTACCCCGGCTTGCCCAGCTACCGACAGGACTGGCT
CTGATTGACTCACTCAAGAAGCTAGAGGAGATCATCACCAAAGGCAAGCT
TGAAAAAGCTGTTGGGTAGTAATGGACTAAACTTGCCACAAGTGATGAGT
TACCCTCCGCCCTCAAAGGAGTTTACCTGTTGGAAGCAGGGACGGCGGGA
AAACCCGGTGAAGATGGAAACCCTGACGCAGAACATCAACCGCCGTCTAC
CTACAACCGAAATGAATTTGGTCAACACTACCAAGTCTTTGGAGCCCAAG
CTCTCCTTTCGAAACCTTTTCATGCAGCAGTGTATCACATGGTGGAAACA
GACTTGCAGAAGGTAGCAGGCGAGGAAATGTCACAGAAGAGGGCATTGAT
CCGCTTGGAGGAAGCGAAAGGCAAGGGAGTTTTGTCGTGGTTGACAACGC
AAGGGTTGTCAGCAGATGAAAGAATGCTGCCTGATCTATATCGAGAGTCA
ATCGGTCGTGTACTGGGGAGTCACGATCGAGCAGACTGCAACACAGGCAA
ACTTTGTGGTGCAGGTGCATTGTTACCATGCAAGGACCGCTTGAGCCGAG
CCCACTCCCTCGTCTGCACCAAGACCGGCGCCTCAACCTTCCTCCAAAAC
AGGATGGTTCGCGTAGTCCTCAAGACACTGCGTGAGTGCCATATGCCCAT
CGCCGTTGAGGATTCTTCCCCTTTTACCACAGGCACTGGTAGGGGAAAGG
GGCTATACAAGATGGATTTGGTAATCCCCCCAGGATTACACGCAGGAGAG
AAGGAAGAGGAACTAACTCTGCACCAAGTCCATCCTTATGGACGTAACAA
TCGTCAACCCATCCGCATGTCGAAGCATCGACAAGTCGATGCAAAAGCCA
GGATCCGCCCTCGAAGATCAAGCTGCATAAGGCAAATCACTATGCGGGAA
CTTTCAAGCCGTCCGTCTAGATCTATCTACCCTCCTTACTGCTGCTTTTT
CAACGAATGGTGGTCTCGGCAAAGGCACCAATCGACTCACCGTTGCTATC
GCCAACCACTTGGCGCACGAAGCTTTTTGCCGGGGGAATGATGACGACGA
AAGAGCCTTAGTTCGCCGTAAAGCTTTTCATTCTAA

protein sequence of EsuBft893_8a-0001

>EsuBft893_8 ID=EsuBft893_8|Name=EsuBft893_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=201bp
MPVAGIPIGTEEVQRNFVSKFARGDPAEVILHLVTLDDPQASYQLLRFSG
VPRLFHLLRTIAPFITNSAARKHDNMMMWAMSKIVLGKMADSMRIPTEKG
VRADPTKREEVDFFKGTARAQVHLSMRERGLGITSNVFIRESAFVAGQAL
VFSKSVQASTGHTVDQCLPRLAQLPTGLALIDSLKKLEEIITKGKLEKAV
G

mRNA from alignment at Scaffold_1228:94383..96518-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft893_8a-0001 ID=EsuBft893_8a-0001|Name=EsuBft893_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2136bp|location=Sequence derived from alignment at Scaffold_1228:94383..96518- (Ectocarpus subulatus male Bft15b)
CATTTTGGATTCAGGAACGTCTCTCCCAAAAAGGGGTTGAGCTCAGTCTC
CCGAAATCCAAAGTGCTTTTCCCGGAAGGTCTTTGCATGTCCTCTTTGAC
AAATGGCGAACAGCAACAAACAGTCAGTTGACGAAAATTGGTCTGTCAGT
TGCTGAAGGTGGCATGCCAGTAGCCGGGATCCCAATAGGGACAGAAGAGG
TACAGAGAAATTTCGTTTCCAAATTCGCCCGTGGTGACCCGGCGGAAGTG
ATACTCCACCTGGTAACGCTTGACGACCCTCAAGCCAGCTATCAACTGCT
GCGTTTTTCTGGTGTGCCACGTTTGTTTCATCTGCTGAGGACGATTGCAC
CGTTTATCACCAACTCTGCCGCTAGAAAACATGACAACATGATGATGTGG
GCAATGAGCAAGATCGTCCTTGGCAAGATGGCCGACAGCATGAGAATACC
AACCGAGAAAGGAGTACGCGCAGACCCGACGAAGCGCGAGGAGGTAGATT
TCTTCAAAGGGACAGCTCGGGCACAGGTGCACCTATCCATGCGTGAAAGA
GGACTAGGAATCACGAGCAATGTTTTCATTCGAGAATCGGCTTTCGTGGC
AGGGCAAGCGCTGGTGTTCTCCAAGTCAGTGCAAGCATCGACAGGACACA
CAGTTGATCAATGTCTACCCCGGCTTGCCCAGCTACCGACAGGACTGGCT
CTGATTGACTCACTCAAGAAGCTAGAGGAGATCATCACCAAAGGCAAGCT
TGAAAAAGCTGTTGGGTAGTAATGGACTAAACTTGCCACAAGTGATGAGT
TACCCTCCGCCCTCAAAGGAGTTTACCTGTTGGAAGCAGGGACGGCGGGA
AAACCCGGTGAAGATGGAAACCCTGACGCAGAACATCAACCGCCGTCTAC
CTACAACCGAAATGAATTTGGTCAACACTACCAAGTCTTTGGAGCCCAAG
CTCTCCTTTCGAAACCTTTTCATGCAGCAGTGTATCACATGGTGGAAACA
GACTTGCAGAAGGTAGCAGGCGAGGAAATGTCACAGAAGAGGGCATTGAT
CCGCTTGGAGGAAGCGAAAGGCAAGGGAGTTTTGTCGTGGTTGACAACGC
AAGGGTTGTCAGCAGATGAAAGAATGCTGCCTGATCTATATCGAGAGTCA
ATCGGTCGTGTACTGGGGAGTCACGATCGAGCAGACTGCAACACAGGCAA
ACTTTGTGGTGCAGGTGCATTGTTACCATGCAAGGACCGCTTGAGCCGAG
CCCACTCCCTCGTCTGCACCAAGACCGGCGCCTCAACCTTCCTCCAAAAC
AGGATGGTTCGCGTAGTCCTCAAGACACTGCGTGAGTGCCATATGCCCAT
CGCCGTTGAGGATTCTTCCCCTTTTACCACAGGCACTGGTAGGGGAAAGG
GGCTATACAAGATGGATTTGGTAATCCCCCCAGGATTACACGCAGGAGAG
AAGGAAGAGGAACTGTTAAAAGAGGACCCGATTCGCAGGGTATCCGTCGA
TAGACTTTCACCTGAATCGGTACACCTTCGCACATGGCGTCAGCGGCAGG
ATACTGGTGCGAATCTCCTTGGGTGCACACTTTTTCTCCTGGCTTGGACA
TTTTCCCATGGACATAATGTGTGTCAGTCCTGAGAACACCTCTTGGAGTC
GATCCTACAAAGAACCTTGTGACACTTCCATCGAATCACCCATCCTGGCC
ACAAGAGGTTCCCAGTTGAGGGTAAATTCTGCGGGTGGAGAGTGTTAAGG
AGGACCCGATTCGCGGGGTAGTATCCGTCGGTTGACTTTTACTTGAATCG
GTACACCTTCGCAGAACTCTGCACCAAGTCCATCCTTATGGACGTAACAA
TCGTCAACCCATCCGCATGTCGAAGCATCGACAAGTCGATGCAAAAGCCA
GGATCCGCCCTCGAAGATCAAGCTGCATAAGGCAAATCACTATGCGGGAA
CTTTCAAGCCGTCCGTCTAGATCTATCTACCCTCCTTACTGCTGCTTTTT
CAACGAATGGTGGTCTCGGCAAAGGCACCAATCGACTCACCGTTGCTATC
GCCAACCACTTGGCGCACGAAGCTTTTTGCCGGGGGAATGATGACGACGA
AAGAGCCTTAGTTCGCCGTAAAGCTTTTCATTCTAA

Coding sequence (CDS) from alignment at Scaffold_1228:94383..96518-

>EsuBft893_8a-0001 ID=EsuBft893_8a-0001|Name=EsuBft893_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=606bp|location=Sequence derived from alignment at Scaffold_1228:94383..96518- (Ectocarpus subulatus male Bft15b)
ATGCCAGTAGCCGGGATCCCAATAGGGACAGAAGAGGTACAGAGAAATTT
CGTTTCCAAATTCGCCCGTGGTGACCCGGCGGAAGTGATACTCCACCTGG
TAACGCTTGACGACCCTCAAGCCAGCTATCAACTGCTGCGTTTTTCTGGT
GTGCCACGTTTGTTTCATCTGCTGAGGACGATTGCACCGTTTATCACCAA
CTCTGCCGCTAGAAAACATGACAACATGATGATGTGGGCAATGAGCAAGA
TCGTCCTTGGCAAGATGGCCGACAGCATGAGAATACCAACCGAGAAAGGA
GTACGCGCAGACCCGACGAAGCGCGAGGAGGTAGATTTCTTCAAAGGGAC
AGCTCGGGCACAGGTGCACCTATCCATGCGTGAAAGAGGACTAGGAATCA
CGAGCAATGTTTTCATTCGAGAATCGGCTTTCGTGGCAGGGCAAGCGCTG
GTGTTCTCCAAGTCAGTGCAAGCATCGACAGGACACACAGTTGATCAATG
TCTACCCCGGCTTGCCCAGCTACCGACAGGACTGGCTCTGATTGACTCAC
TCAAGAAGCTAGAGGAGATCATCACCAAAGGCAAGCTTGAAAAAGCTGTT
GGGTAG