EsuBft893_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft893_10a-0001
Unique Name	EsuBft893_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_1228	contig	Scaffold_1228:100127..104581 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6334.EFV51170
ProteomeId	EsuBft893_10
Protein domains	PTHR24559
Protein domains	IPR001584
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Note	transposon ty3-i gag-pol polyprotein os:saccharomyces cerevisiae (strain atcc 204508 s288c) gn:ty3b-i pe:3 sv:2 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	2821
Evalue	1.92e-18
EggNOG OGs	COG2801@1\|root,2RTAR@2759\|Eukaryota,3AJMR@33154\|Opisthokonta,3BZTT@33208\|Metazoa,3DG7F@33213\|Bilateria
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Integrase core domain
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft893_10a	EsuBft893_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_1228 100127..104581 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft893_10a-0001	EsuBft893_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_1228 100406..101221 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft893_10a-0001-exon	agat-exon-26479	Ectocarpus subulatus male Bft15b	exon	Scaffold_1228 100127..102025 +
EsuBft893_10a-0001-exon	agat-exon-26480	Ectocarpus subulatus male Bft15b	exon	Scaffold_1228 102524..102813 +
EsuBft893_10a-0001-exon	EsuBft893_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_1228 103950..104581 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft893_10a-0001-exon	agat-five_prime_utr-14786	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_1228 100127..100405 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft893_10a-0001-cds	EsuBft893_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_1228 100406..101221 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft893_10a-0001-exon	agat-three_prime_utr-22812	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_1228 101222..102025 +
EsuBft893_10a-0001-exon	agat-three_prime_utr-22813	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_1228 102524..102813 +
EsuBft893_10a-0001-exon	agat-three_prime_utr-22814	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_1228 103950..104581 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_1228:100127..104581+
coding sequence from alignment at Scaffold_1228:100127..104581+

spliced messenger RNA

>EsuBft893_10a-0001 ID=EsuBft893_10a-0001|Name=EsuBft893_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2821bp|location=Sequence derived from alignment at Scaffold_1228:100127..104581+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGACTTTTACCTGAATCGGTACACCTTCGCTTATTATGGCGCCAGCTGG
ATACTGGTTCGAATCTCCTTGGGTGCACACTTTTACTCCTGACTTGGATA
TTTTCCCAAGCACACAATGTGTGTCAGTCCCGAGAACACCTCTTGGAGTC
GATCCTACAAAGAACCTTGTGACACTTCCATCGAATTACCCATCCTGGCC
ACAAGAGGTTCCCAGTTGAGGGTAAACTCTGTGGGTGGAGAGGACAACGG
ACTTCATTTATTTTTGTTCGAAGCTCTCCATGGCTATCTACGAGGTGATG
AAAATTAAGAAGGTCACCACCAGCTCCTACCACCCGCAGACCAACGGTGG
CACGGAGCGCGTCAACCACACGATGGCCCAAATGCTTGCCGTTGCGGTCA
ACGAACAGCAAAACGACTGGGATGTGCATCTCCCACACGTTGAGTTCGCC
TACAACAATTCTGTGAACCAGTCTACTGGGTTGGCGCCCAACGAGATCCA
CATGGGACGTATCCCGCGACTTCCGCTTTCGGTCTTCGATCATCCCTCAG
TCGGTGGTCATCAAAGCTTGGACCGTGATCAACTCGAGTATTGCAACCTG
GCAGTAGATCGGCAACGCCGAGCGTACGACCTGGTCCGAGAGTACAACGC
TCTGAAAATTTCGAGAGTCGAACGCCGCAATTCATCCATGCTGGACGCCA
TCAACAAGATTCCGAAGTTTACTGTTGGAGCGTGGGCTTGGGTGTACAAC
ACGGCTGCTACGATTCGCCAAGGTGCGCGCAAGGACACCGATCAACAGGT
GCTCAAGGCCAAGTTCGCGCTCTCCTGGACGGGACCCTACAAAGTACTTG
CTGTGGGGCCAGCCTCTGCGAAAGACACCCCGGACGGACACCCATTGGCT
CACAAACTGCTCTACCTTGACCTTCCTTCTGATCTTTCGGGCCCAGCAGC
TCGTTCGAGGGTGTCTGTTCTTCGTTGCAAGCCCAGCCGCAACCCGCATG
AGACGGACGATCGGCCACAGTCCATGCCTGCAGAACTCTCTCGCTATGTT
TTGCATTCTTTCGGAGATAAATGTCCGCCGTTTCATGTCACCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAGGTACAGGCCAGAGCTATCGTTCAAGCCGCTGTGGGG
CGAAATCCACCCAGTCAGTGCCATGGTACGCCTACACCCGGCTGGACGGT
GTCCCCAAGGGCGGTGTCGTAGATAAGCTTATATACTCTTCAACCACTTG
GCCGATTTGACCCAAAATGGTATGGGCTGATAGCTGCGGGCCGTGGCTAC
ACAGCGCATTTTGTTGTACGCCGATTGGAGCCCTGTGGACCAAGAAATGG
TACGAGCAAACTCCTCTGTGTGTTGTCGAAGATGGACTGCGCTTCTGCAC
AAGCCCAACATGCCACCATGAACAACATACTACTGCTGCTGTTCACCTGT
TGACGTCCTTCCACGTCTACCTGTCCATGACACATGCTGCCACTTGATGC
GGCAACATCTGGGAACATCTGGGAACAATACGGACACAGGGAGTATCCCC
GTACCCATACGCACAACCTCTCATTCCTCCCTTGTCAAACACAAATGATG
TAACATGCATGAAATGATGAACTCTGTCTATACTTACAATCTGTTCCACG
CTGCCTACCAATGGAAGAGGTAGCCATACCTCCTGCCTACACACGGACGA
GAGAGGTGAACACACCCACTGCATTTAACACACACCCACATGTCGGTGAT
GAAACCTCATCAACCACACGCCTCTATCGGCGACCACGTCATCAGGTGGC
AATGATGAGAAATGTTCTCCCGTGCCCTTCTCACATTTAACATGAAATTC
CACAACACAACATATATGAGACACACAAGACAGCTACCAAACTGATCTTT
TGAGCCTGTCACCCGAGAGTTGTCCCTATATGCTGTCTAGGAAATCGTAG
ACATACAGGTAGTTTTCTCTGACCCTATGATTCCATTGTTAACATGTTTC
TGACTCTTTTCTATGACAGAGATGGCACATCAGCCGCACATACATACTCC
GCACATATGCATACCAAACTGAGAATATGTTTGTAAACTCATGGAGATTG
CATGTCCTACAAATAACAGGGTGCGACAGACAAAACGCCCGACTACCCAA
CAGTACCCAACACCTTTCGTTTGCACCTTCGCAACATAACATACTATGAG
ACACACAAGACAGCTACCAAACTGATTTGTTGAGCCTGTTACCCACGGGG
GAGATGTCCCTATATTATGCT

protein sequence of EsuBft893_10a-0001

>EsuBft893_10 ID=EsuBft893_10|Name=EsuBft893_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=272bp
MAIYEVMKIKKVTTSSYHPQTNGGTERVNHTMAQMLAVAVNEQQNDWDVH
LPHVEFAYNNSVNQSTGLAPNEIHMGRIPRLPLSVFDHPSVGGHQSLDRD
QLEYCNLAVDRQRRAYDLVREYNALKISRVERRNSSMLDAINKIPKFTVG
AWAWVYNTAATIRQGARKDTDQQVLKAKFALSWTGPYKVLAVGPASAKDT
PDGHPLAHKLLYLDLPSDLSGPAARSRVSVLRCKPSRNPHETDDRPQSMP
AELSRYVLHSFGDKCPPFHVTX

mRNA from alignment at Scaffold_1228:100127..104581+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft893_10a-0001 ID=EsuBft893_10a-0001|Name=EsuBft893_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4455bp|location=Sequence derived from alignment at Scaffold_1228:100127..104581+ (Ectocarpus subulatus male Bft15b)
TTGACTTTTACCTGAATCGGTACACCTTCGCTTATTATGGCGCCAGCTGG
ATACTGGTTCGAATCTCCTTGGGTGCACACTTTTACTCCTGACTTGGATA
TTTTCCCAAGCACACAATGTGTGTCAGTCCCGAGAACACCTCTTGGAGTC
GATCCTACAAAGAACCTTGTGACACTTCCATCGAATTACCCATCCTGGCC
ACAAGAGGTTCCCAGTTGAGGGTAAACTCTGTGGGTGGAGAGGACAACGG
ACTTCATTTATTTTTGTTCGAAGCTCTCCATGGCTATCTACGAGGTGATG
AAAATTAAGAAGGTCACCACCAGCTCCTACCACCCGCAGACCAACGGTGG
CACGGAGCGCGTCAACCACACGATGGCCCAAATGCTTGCCGTTGCGGTCA
ACGAACAGCAAAACGACTGGGATGTGCATCTCCCACACGTTGAGTTCGCC
TACAACAATTCTGTGAACCAGTCTACTGGGTTGGCGCCCAACGAGATCCA
CATGGGACGTATCCCGCGACTTCCGCTTTCGGTCTTCGATCATCCCTCAG
TCGGTGGTCATCAAAGCTTGGACCGTGATCAACTCGAGTATTGCAACCTG
GCAGTAGATCGGCAACGCCGAGCGTACGACCTGGTCCGAGAGTACAACGC
TCTGAAAATTTCGAGAGTCGAACGCCGCAATTCATCCATGCTGGACGCCA
TCAACAAGATTCCGAAGTTTACTGTTGGAGCGTGGGCTTGGGTGTACAAC
ACGGCTGCTACGATTCGCCAAGGTGCGCGCAAGGACACCGATCAACAGGT
GCTCAAGGCCAAGTTCGCGCTCTCCTGGACGGGACCCTACAAAGTACTTG
CTGTGGGGCCAGCCTCTGCGAAAGACACCCCGGACGGACACCCATTGGCT
CACAAACTGCTCTACCTTGACCTTCCTTCTGATCTTTCGGGCCCAGCAGC
TCGTTCGAGGGTGTCTGTTCTTCGTTGCAAGCCCAGCCGCAACCCGCATG
AGACGGACGATCGGCCACAGTCCATGCCTGCAGAACTCTCTCGCTATGTT
TTGCATTCTTTCGGAGATAAATGTCCGCCGTTTCATGTCACCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAGGTACAGGCCAGAGCTATCGTTCAAGCCGCTGTGGGG
CGAAATCCACCCAGTCAGTGCCATGGTACGCCTACACCCGGCTGGACGGT
GTCCCCAAGGGCGGTGTCGTAGATAAGCTTATATACTCTTCAACCACTTG
GCCGATTTGACCCAAAATGGTATGGGCTGATAGCTGCGGGCCGTGGCTAC
ACAGCGCATTTTGTTGTACGCCGATTGGAGCCCTGTGGACCAAGAAATGG
TAGGTGTCGTATATAAGGAAGTACGACACCGGTCGGTGTCGTATATAACA
CTACCGTTCTTCCCCTGCCTGAGGATCTCTATTCCACCGCCTTAAACGCC
GTCTGTGGATCCTGGTGACTGGAGAAACATCGTTCCCGCCCTTTGGGCGA
CATCAGCGTCCGCATCCGTCTTCCCGCTGACTCCTTACCGTCAGCCGTCC
CCACGGTTTCTTCTTAGTGTTTGGTATTTCGGCGCCTTGCGGGGAAACTT
CCCATTTTTTTTATGTTTCGATTTGATTTTCTCCGGTCTTGCGTCTTGTT
TTCTCTTGCTCCGTTTTTTTTTAATTTTTTTTACGTTGGCTTTGTCTTCC
TAGTTCTGCTCACTTCTGTTTGACAACCTGGGACCGAAAAGAAAAGAACT
TGAGGAGGACAAACTGTAAAGCTGTAGAGTATACTGCACTGCGTTTGCTC
CTTGCTGCTGCTCTTGGCTGACCCAGGACTTCGAAAAATCCCCACAGGTA
CGAGCAAACTCCTCTGTGTGTTGTCGAAGATGGACTGCGCTTCTGCACAA
GCCCAACATGCCACCATGAACAACATACTACTGCTGCTGTTCACCTGTTG
ACGTCCTTCCACGTCTACCTGTCCATGACACATGCTGCCACTTGATGCGG
CAACATCTGGGAACATCTGGGAACAATACGGACACAGGGAGTATCCCCGT
ACCCATACGCACAACCTCTCATTCCTCCCTTGTCAAACACAAATGATGTA
ACATGCATGAAATGATGAACTCTGTCTATACTTACAAGTATTATAGTCCA
CAACAGACTTGCGGGAAAAATGGGAACGTATCCAAAAATGAGAATTGGCG
TTTTTCTTCAGAACCATCGGGTGTATCACAGAACCAAAATTATCCTGCGA
AACCCCTTCGCCCCAGCTGTGAGATGAGCTCATCAGAACCGCCATGCTCC
ACATCACGCCTTCTCACGGGCGCAAAAAGCGATTCGTGCTGGTTTCGACC
TGATTTCTCGCGATGCTGGCTACCTCGGCGATGCCGAGGACATACAGCTT
GAGCAACAGCTCATTCGAAAGCTGCTGTAAAGACCTACAGCACTGTCAAC
TTTTTTGGGGGGAATTGCAAAGGCGTGGTTTGCTTTCTAAAAACAAACGC
CCATTCTCCCTTCTTCCCCTCGCTCCTCGACAAGCTTTTGCTTAGACATG
GGTTGTAGTGAAGGGGGGGGTCTTTCTGGCGAGCAGGGCTAGACTCACCC
TCAAGGGATGACCGAAACCTTCTTGCTGCTGCGCATATCCGCCGCGAGGC
ATGCGCGTGGTGGTGTAGTTGGGTCGGCACTGATGGGGTCAGGCGAAAAA
ATGTAGATGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNACTGTACGTCCGCAGACACATTCTGACAGCACTTCAGACAGCA
GCTTTGTGCCCCGCCAGCTTCTTGTTCCATGCCTACCATGGTGTTTTTGT
ACAGACAGCACTTCAGACAGCAAGTATGCTGTAGTCGGCAATCATTCGTT
TTGGTACAGAGTGGGACAAGTAGGGGGTGATGTTGCTGTAGTCGAACGGT
GAGACGGACGTGTAGTTCAGTTTTGGGCACGCGTACGGTGCTGCAGGGAT
TATATATAGGTGTAGTAGTACCTCTTCGGGCTCTTGTACACCTTTTTCTT
GCTACGTGTGCGTGTTCTTTAGATCCTCAGATGGCTCCAGCACTTTCGTG
ACCACGGGCCGAGAGTCTTTGCTAGATTTTGGCATTTAGCAACTGGCATA
CGGTTTAATGTGAAGTCAACAACAACAACAACAACATTCTCATTTTTGGA
TACGTTCCCATTTTTCCCGTAAGTCTGTTCCACGCTGCCTACCAATGGAA
GAGGTAGCCATACCTCCTGCCTACACACGGACGAGAGAGGTGAACACACC
CACTGCATTTAACACACACCCACATGTCGGTGATGAAACCTCATCAACCA
CACGCCTCTATCGGCGACCACGTCATCAGGTGGCAATGATGAGAAATGTT
CTCCCGTGCCCTTCTCACATTTAACATGAAATTCCACAACACAACATATA
TGAGACACACAAGACAGCTACCAAACTGATCTTTTGAGCCTGTCACCCGA
GAGTTGTCCCTATATGCTGTCTAGGAAATCGTAGACATACAGGTAGTTTT
CTCTGACCCTATGATTCCATTGTTAACATGTTTCTGACTCTTTTCTATGA
CAGAGATGGCACATCAGCCGCACATACATACTCCGCACATATGCATACCA
AACTGAGAATATGTTTGTAAACTCATGGAGATTGCATGTCCTACAAATAA
CAGGGTGCGACAGACAAAACGCCCGACTACCCAACAGTACCCAACACCTT
TCGTTTGCACCTTCGCAACATAACATACTATGAGACACACAAGACAGCTA
CCAAACTGATTTGTTGAGCCTGTTACCCACGGGGGAGATGTCCCTATATT
ATGCT

Coding sequence (CDS) from alignment at Scaffold_1228:100127..104581+

>EsuBft893_10a-0001 ID=EsuBft893_10a-0001|Name=EsuBft893_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=816bp|location=Sequence derived from alignment at Scaffold_1228:100127..104581+ (Ectocarpus subulatus male Bft15b)
ATGGCTATCTACGAGGTGATGAAAATTAAGAAGGTCACCACCAGCTCCTA
CCACCCGCAGACCAACGGTGGCACGGAGCGCGTCAACCACACGATGGCCC
AAATGCTTGCCGTTGCGGTCAACGAACAGCAAAACGACTGGGATGTGCAT
CTCCCACACGTTGAGTTCGCCTACAACAATTCTGTGAACCAGTCTACTGG
GTTGGCGCCCAACGAGATCCACATGGGACGTATCCCGCGACTTCCGCTTT
CGGTCTTCGATCATCCCTCAGTCGGTGGTCATCAAAGCTTGGACCGTGAT
CAACTCGAGTATTGCAACCTGGCAGTAGATCGGCAACGCCGAGCGTACGA
CCTGGTCCGAGAGTACAACGCTCTGAAAATTTCGAGAGTCGAACGCCGCA
ATTCATCCATGCTGGACGCCATCAACAAGATTCCGAAGTTTACTGTTGGA
GCGTGGGCTTGGGTGTACAACACGGCTGCTACGATTCGCCAAGGTGCGCG
CAAGGACACCGATCAACAGGTGCTCAAGGCCAAGTTCGCGCTCTCCTGGA
CGGGACCCTACAAAGTACTTGCTGTGGGGCCAGCCTCTGCGAAAGACACC
CCGGACGGACACCCATTGGCTCACAAACTGCTCTACCTTGACCTTCCTTC
TGATCTTTCGGGCCCAGCAGCTCGTTCGAGGGTGTCTGTTCTTCGTTGCA
AGCCCAGCCGCAACCCGCATGAGACGGACGATCGGCCACAGTCCATGCCT
GCAGAACTCTCTCGCTATGTTTTGCATTCTTTCGGAGATAAATGTCCGCC
GTTTCATGTCACCNNN