EsuBft892_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft892_5a-0001
Unique NameEsuBft892_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_196contigScaffold_196:118335..121917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FSS8
ProteomeIdEsuBft892_5
Protein domainsIPR001611
Protein domainsIPR003591
Protein domainsPTHR24373
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSSF52058
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsG3DSA
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Ownerapollo_admin@sb-roscoff.fr
Noteleucine-rich repeat-containing protein 15 os:mus musculus gn:lrrc15 pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length745
Hectar predicted targeting categorysignal peptide
Evalue6.8e-54
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Ec32 ortholog descriptionLeucine rich repeat protein
Ec32 orthologEc-09_001490.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameISLR2
GOsGO:0001558,GO:0002576,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006887,GO:0007155,GO:0007275,GO:0007399,GO:0008150,GO:0008361,GO:0009986,GO:0009987,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0012505,GO:0016043,GO:0016192,GO:0022008,GO:0022603,GO:0022604,GO:0022610,GO:0030141,GO:0030154,GO:0030307,GO:0030516,GO:0031091,GO:0031093,GO:0031344,GO:0031346,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032502,GO:0032535,GO:0032940,GO:0034774,GO:0040008,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045773,GO:0045927,GO:0046903,GO:0048518,GO:0048522,GO:0048638,GO:0048639,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060205,GO:0060284,GO:0061387,GO:0065007,GO:0065008,GO:0070013,GO:0071840,GO:0090066,GO:0097708,GO:0099503,GO:0120035,GO:2000026
Descriptionregulation of response to stimulus
COG categoryU
Cross References
External references for this mRNA
DatabaseAccession
GO0010544
GO0072562
GO0070062
GO0030335
GO0003333
GO0046813
GO0005515
GO0005518
GO0007154
GO0001968
GO0043236
GO0007160
GO0090005
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft892_5aEsuBft892_5aEctocarpus subulatus male Bft15bgeneScaffold_196 118335..121917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft892_5a-0001EsuBft892_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_196 118335..120402 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft892_5a-0001-exonEsuBft892_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_196 118335..118857 -
EsuBft892_5a-0001-exonagat-exon-8575Ectocarpus subulatus male Bft15bexonScaffold_196 119438..119507 -
EsuBft892_5a-0001-exonagat-exon-8576Ectocarpus subulatus male Bft15bexonScaffold_196 120324..120426 -
EsuBft892_5a-0001-exonagat-exon-8577Ectocarpus subulatus male Bft15bexonScaffold_196 121869..121917 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft892_5a-0001-cdsEsuBft892_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_196 118335..118857 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft892_5a-0001-exonagat-five_prime_utr-14780Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_196 120403..120426 -
EsuBft892_5a-0001-exonagat-five_prime_utr-14781Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_196 121869..121917 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft892_5a-0001 ID=EsuBft892_5a-0001|Name=EsuBft892_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=745bp|location=Sequence derived from alignment at Scaffold_196:118335..121917- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTGTCCACGCCCAGCTCCCACCCCTGCTTTGATTGCGCTCATCAACCAAT
CTTCCCGCTGCTCCAACACAAGGATGAACAACACGTGTTTTCAGAGACTG
GCGTTGCCACTGCTCGCAGCTGGCGCCTTGAGCGGGTTCGCTTCAGTAGA
CGCCATCAACCCCTGCCTCGACCCTGCAGCTGAGGAATTCAAATGCTGGC
TCAACCCGGGGGAACTGCATCTCAATCTGATAGGGTGCGACATAACGGAC
AGCGACGCGCAGGATCTCTCGACATGTGTGGACAGCGTTTCCCATGACCC
TGTTAACGAGGTCTCGCTCGGACAAAACAAGTTGACACAGCTGCCGGACG
GAGTCTTCGCCGACTTAACCTACTTACGCTTCCTCTACCTCGACGAAAAC
TCCCTGACGAGCTTGCCGTCCGGTGCTTTCAGCGGCATGTCTCTCCTCCA
GCGGCTGTACCTTGACAACAACGACCTCTCCGAGCTCTCTGAGGGGATTT
TCGACGGGCTGTCGTCGCTGGAAGAGTTGGACCTGGGGTCGAACGCTCTT
TCTGCGCTTGACCATGGCGTTTTCGACGGCCTCGGAGCTCTCCAAAAGCT
GTGCGTCCATACGTCGCTTCGAAGCTTTTCACTTTTCGGCAAGCAGAAGG
CAGCAAAGCTGCCATTTTCTCGGCACAAATGTCTTGTAGACCAAGCCACT
AGCTATCGCTCCCGCGTTCATATGAGTATTTTGCGTCGAGATTGA
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protein sequence of EsuBft892_5a-0001

>EsuBft892_5 ID=EsuBft892_5|Name=EsuBft892_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=223bp
MNNTCFQRLALPLLAAGALSGFASVDAINPCLDPAAEEFKCWLNPGELHL
NLIGCDITDSDAQDLSTCVDSVSHDPVNEVSLGQNKLTQLPDGVFADLTY
LRFLYLDENSLTSLPSGAFSGMSLLQRLYLDNNDLSELSEGIFDGLSSLE
ELDLGSNALSALDHGVFDGLGALQKLCVHTSLRSFSLFGKQKAAKLPFSR
HKCLVDQATSYRSRVHMSILRRD
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mRNA from alignment at Scaffold_196:118335..121917-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft892_5a-0001 ID=EsuBft892_5a-0001|Name=EsuBft892_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3583bp|location=Sequence derived from alignment at Scaffold_196:118335..121917- (Ectocarpus subulatus male Bft15b)
CTGTCCACGCCCAGCTCCCACCCCTGCTTTGATTGCGCTCATCAACCAAG
TGAGTCCATGCACCTGACACGTTTGTGAACCGAGGTCTTCCCCCAGACCT
TGATGTCGTAACTACAGTACCTTCCGCAGTCATGTCGCCCTGTGGTGCCG
TAGATACGTCCGTGGTAGTTTTTGCGTCCGTTCAACGCGGCGTACACAGC
AGAATATCGAGTACGATTCCGAGTGATGAAACCGGACACCGTGCCCGGGA
GCTTTCAGGCACAATTGTGCGATGTGCCGTGTTGAAAACGTACGATGCTG
GTGCCCCGAGCCCCCTCTCCGGGTTGGCGGCATCCGAGATCAGTGCTGTT
GGAATGCCACGGCAATGATGCTCTACATTGGTTTGTTCCGAAATGAAGAC
CGTCAAAATGCGCAAGAATACGGGATGATGCGCGAGCCGTGTACAGCAGT
TGCGTTAGGACGAAAAGCAAATGGGTACCACCCTGGCGTGAGATACGAGC
GGCGCAACGTGGGTAACGTGGGTGTTATCAAGGCTCTCTTGACCTGGCGT
TGATTCCACGTATGACCAGCCTCCCTTGGACTCACTCGATTATTCTCTTT
CCGAGAGCGCATCATCATCACCACCATCATCATCATCGACGAACACCAGC
CCCTATAGACACCATCGAATTATCGAAACCCAGCAATTCCGGCCTTTGTC
GGGAGGTCATCGGGCAGCCTCGTTCTCTACCGCAGCAACAATCCTTGCAA
TACGTGGCGAGCTTGTCGCCGTCCCAGCACCTTCGTCCATCTCAGAAAAG
CCGCGGTGCATTTCGTGCAAATGTGCAAACCTACGCAGAGTCTCGGTGGA
ACTATTTCCCTTCGCCTCTCGGCGAGACCCAGCCACCATGCCAAACCAAT
CCAACATCGCGTTTGGCAATGAACGAAGCTGATCATCCAGTTGATACCAC
GTAGTGAAACCCGTTATAGGACCGACGGTAACCTTCCTACTGTACTAATT
CAACGTGCGACCTAATTTGGTCAGGATCTGGCACTTTTCAAGTCCACCGT
ATGAATTCCCGGAAAAATATCGGCTAAATCTGCACGAAACAAATTTGAGG
ACAACGGGCAGGCTGTTTGAGATGGGCGATTCAGATCATCGACGTAAATG
GAGAGGCCGCTACAATATGGCATTGTCGCGAAGATGGCAGTTGGTTTCGC
TTGTCAGCGCTGAGAGCAACTACACTGTGATCCGTTTCTCAGCAAACCGG
GAGTGTATCGGTACTTTTGTTTTGCTTGTTTCACGAATGCCGTGAATGTG
TCACGCAGCCAATCACAAGCCTTGAAGCCATTTACGTTTGGAGCACAACA
TAATTTGAGTCATACAACATGGGCTAACCTTATCCTGGTGTATGGTAGTC
GGTAGCCAAGTCATGAAAACCAAATATTAACGCAAATACTCTCCGCTACC
GTCAACATGACTCCTCCTTGGTCGGCATTGTTTTCTCGCAGTCTTCCCGC
TGCTCCAACACAAGGATGAACAACACGTGTTTTCAGAGACTGGCGTTGCC
ACTGCTCGCAGCTGGCGCCTTGAGCGGGTTCGCTTCAGTAGACGGTGAGT
CCTTGGTTCTGTACCAATATGTTCGAGGGAACTAAGAGCATTGGTATCAT
CATGGGGTTGTTCGAATAACTATCGCTGTCGACCACGGATTCGATTTTCT
GTTCGTTAGAGCATTCGAAGATTTCCTCGGTTGGCCTTTTCTGCCGGTCC
TAGGAGTATGCATGAGATTTCTTGTTTACACTTCCGACAGCTTTGCAGAG
ATGGGTCGTAAAAACCGGTGTACGGCATTTGCACAAATGCTGGATGGCTT
TCAGCACGTACGCGCAACACATGCAATACTGTCGTACTTGAGAACGCGCG
CATCGAAACTGTGCATGCATTACCTCCAGTAACACCTTGTGGATGTAGAG
TGAAGACCTGTTTCGAACTTCGTAGTTTGTGTTTTGGCACTTCCGGATCT
GTAGAGGTACGTATCACGGTGGCCCCACAGCTACGAAGGACGATGCGTTC
GAAAACACGGTTGCGATCACGATACCCGCGACTGTTTTTGGGCGCTCCCA
TTCTCTACACCTCTTCATGCCCATGCACTCCCAGAATCTCGAGGCTTTCG
TGGAGTCCGGATCAATGCTTTTTTTGTTTCTTGGTGCGCGGTGGACGAAC
ACTTGCTGACATGTGCTAGAATGACAAGCCCTGCTCGACGAATGAAAACC
CGGGGCCATCTTTCTTACGGCTTCCAGATCCTTGCCACTGTGTAAATGGA
AAGTCGTGATGTCAGGCATTGGTTGACCGAATGTCGTGCGTTTGCCGCCC
ACATCCCTCTTCCCTCTCCCGTATTTCCTCTTCCACTTCTCTCGGTGGCC
TCTCCGGCAGCCATCAACCCCTGCCTCGACCCTGCAGCTGAGGAATTCAA
ATGCTGGCTCAACCCGGGGGAACTGCATCTGTAAGGCTGTTGGATAGCGC
GCAACCTACCTTGTTGTGGCACGTTGGCAGGTAGCACAACAGAATGTCGT
CGAACCATGCTTGTTGTTATTCACCTCGTATGGGCATACATGAAACTGGC
AAAATATTTCTGAGAATAGAGTGTTGACCATGGCGATACCAATCTACCGT
ACTCTTGACACGTGTTCGCCCCAAAATTGAGCTTCCAAAGGTCAGTAGTA
TGTGGACAGACTCCAACATCCTGAGCACAAAGTCAGCATCCAGCCATTAC
GTAGTGTACGGCTACACGGTTCTTGACGTGCACTCTGCGCATTTGTCCGA
GAACGAAAAAACTTGTGGCCAATCAGCCACAACGAATATTCTTGATCTGC
TTGTTCACGGGCCCAGGCGACTGTACACCGGGGGACGTACAATTGGCGAT
GTTTTATTCGCATCCTTCTAGTGGACATCGTCGCAACCCTGTTCACCCTC
GATCGAGTCATTTGTCAATGGCCGACAGCGCGCATCGGTCGCTAACCCTG
ATCATCGCTTTTGCTCCCTGCTGGGCGTGTGACACGTTCGTATCTTCTTC
GTTCCTTCAGCAATCTGATAGGGTGCGACATAACGGACAGCGACGCGCAG
GATCTCTCGACATGTGTGGACAGCGTTTCCCATGACCCTGTTAACGAGGT
CTCGCTCGGACAAAACAAGTTGACACAGCTGCCGGACGGAGTCTTCGCCG
ACTTAACCTACTTACGCTTCCTCTACCTCGACGAAAACTCCCTGACGAGC
TTGCCGTCCGGTGCTTTCAGCGGCATGTCTCTCCTCCAGCGGCTGTACCT
TGACAACAACGACCTCTCCGAGCTCTCTGAGGGGATTTTCGACGGGCTGT
CGTCGCTGGAAGAGTTGGACCTGGGGTCGAACGCTCTTTCTGCGCTTGAC
CATGGCGTTTTCGACGGCCTCGGAGCTCTCCAAAAGCTGTGCGTCCATAC
GTCGCTTCGAAGCTTTTCACTTTTCGGCAAGCAGAAGGCAGCAAAGCTGC
CATTTTCTCGGCACAAATGTCTTGTAGACCAAGCCACTAGCTATCGCTCC
CGCGTTCATATGAGTATTTTGCGTCGAGATTGA
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Coding sequence (CDS) from alignment at Scaffold_196:118335..121917-

>EsuBft892_5a-0001 ID=EsuBft892_5a-0001|Name=EsuBft892_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=672bp|location=Sequence derived from alignment at Scaffold_196:118335..121917- (Ectocarpus subulatus male Bft15b)
ATGAACAACACGTGTTTTCAGAGACTGGCGTTGCCACTGCTCGCAGCTGG
CGCCTTGAGCGGGTTCGCTTCAGTAGACGCCATCAACCCCTGCCTCGACC
CTGCAGCTGAGGAATTCAAATGCTGGCTCAACCCGGGGGAACTGCATCTC
AATCTGATAGGGTGCGACATAACGGACAGCGACGCGCAGGATCTCTCGAC
ATGTGTGGACAGCGTTTCCCATGACCCTGTTAACGAGGTCTCGCTCGGAC
AAAACAAGTTGACACAGCTGCCGGACGGAGTCTTCGCCGACTTAACCTAC
TTACGCTTCCTCTACCTCGACGAAAACTCCCTGACGAGCTTGCCGTCCGG
TGCTTTCAGCGGCATGTCTCTCCTCCAGCGGCTGTACCTTGACAACAACG
ACCTCTCCGAGCTCTCTGAGGGGATTTTCGACGGGCTGTCGTCGCTGGAA
GAGTTGGACCTGGGGTCGAACGCTCTTTCTGCGCTTGACCATGGCGTTTT
CGACGGCCTCGGAGCTCTCCAAAAGCTGTGCGTCCATACGTCGCTTCGAA
GCTTTTCACTTTTCGGCAAGCAGAAGGCAGCAAAGCTGCCATTTTCTCGG
CACAAATGTCTTGTAGACCAAGCCACTAGCTATCGCTCCCGCGTTCATAT
GAGTATTTTGCGTCGAGATTGA
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