EsuBft891_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft891_9a-0001
Unique NameEsuBft891_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_152contigScaffold_152:182422..186726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FXL6
ProteomeIdEsuBft891_9
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length324
Evalue1.2e-18
EggNOG OGsCOG0534@1|root,KOG1347@2759|Eukaryota
Ec32 ortholog descriptionFlagellin assembly, membrane protein MviN
Ec32 orthologEc-28_002170.2
Date last modified2016-06-13
Date creation2016-06-13
Descriptionantiporter activity
COG categoryV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft891_9aEsuBft891_9aEctocarpus subulatus male Bft15bgeneScaffold_152 182422..186726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft891_9a-0001EsuBft891_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_152 185060..186720 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft891_9a-0001-exonagat-exon-99059Ectocarpus subulatus male Bft15bexonScaffold_152 182422..185161 -
EsuBft891_9a-0001-exonEsuBft891_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_152 185565..185930 -
EsuBft891_9a-0001-exonagat-exon-99058Ectocarpus subulatus male Bft15bexonScaffold_152 186589..186726 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft891_9a-0001-exonagat-three_prime_utr-22806Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_152 182422..185059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft891_9a-0001-cdsEsuBft891_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_152 185060..185161 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft891_9a-0001-exonagat-five_prime_utr-14776Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_152 186721..186726 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft891_9a-0001 ID=EsuBft891_9a-0001|Name=EsuBft891_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3244bp|location=Sequence derived from alignment at Scaffold_152:182422..186726- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGTGCGATGATGGCGACGAGGGAGGTGTACCCCACGGCGGCGATCTACAC
GGTGTGCAGCGTTCTCTTCTCGGGGAACTTCGTGCTCATGAGGAGGTCGC
CGTCTCTCAAGCTTGCCTCAGTGTGGGCGGCCTTCGTGGTGACCCGGTGC
GTGCTGTTCGCGGGCACCGTCGGCTGGTCCCACCGCGTGAGCTTCCGGGA
GAACTTCTTCTCGTCTTCATCCGACGACGACGACTGGGCCCGAAGCAGCA
GCAGCAGCAGCCAGAACGCCCTCGAAATCGCCGACAACGCCCCCGCTTCC
GGCGGCGTGAGGATGGCCACGGCGGCACCTAAGGCTACGGCGGTAGTTCA
GGAGGACGCCGCGGACGTGCTGCTGTCGGAAGCGGCTTCTTCTTCTTCCG
GTTCGGGCTTGAAGCCCCTGCTTGTCCTCTCCCGCTTGACGGCCGGGTTG
GCCTCGCGCCGCAAGCTGTGTGCTCCGACGTTGCCTACTTTGTTTGGAGG
TGAGCTGTCGCTCACCGCTGTCGGGAGGCTGGGGCGCCGCGGGATTATGA
ATGAGATGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGGGGGGGTCGTGTGTCGCATGCATTCATACCTAAATCGAG
CGAGTGAATCGATTATTATGATGCCGAAGTGTATTGCACCGAGTGGAGTT
GTCGTGATGCCGGGGTTGGAGGTGATGTACAGGAACTCCCGGCGTCCCAC
CTAGAGAGAGGATTATGGTGTTGTACAGCAAGTTGTTTTGGTGTGGTGTG
CAGTTTACCGAAGGGAAAGAGGGGACGGGGGGGGTATGGCACACACGTGA
CCCCGATGTACCGTTATATTGATCCTTGCACAACGCGGAGCCCGCGGTGG
CGGGAGCAGGACTTGATGACATGCACGGCATCCTCTTGATGTATTTGTTT
TGGTGGTGTTTGTTAAAGGACATGTTTTGGTTCTCGCAGGCAAGGGGAGG
GACTGAGATTGGTCATAATTCACGGAATCCCGAGGCGCTTGTTGATAGGT
TTCCCATGGAAGGGGCTTTGCTCTCCTGAGGATGCGGGATTGGGTAACGA
GGGGTTTGAGGACACGGATACCGTGTTTCTGTTGGTTGGACATCCACGCC
ACTAATTTTTTCCCGCACACAAACCCGTGGGTATGGTAATACAGGTGACG
GTGAAACGTGACGGTTTTTTCTTGTTTCGGGAGTCGAGGGGCGTGGTGTT
GGGGGGGTCGCGGATGACCAAGCAATATGCTATGGTTTTGTCCCTCCCCT
ATGGCGACTAATGTCTTTTCGTTGGTCACGGTGGCTATAGCTAGCGCGTT
TGATGTCCACTTAAGAATTAATCGAACACATGCAGTGGCCACAGATATAA
CAGGACATAGATAGAGAGAGTGTGAAAGTCTGGGGGGGACAGAAAGCGCA
TGCCAGAAGGAGGAGGTCTGGCCCACCTTTAATGACACGTTCGAGTCTGA
TCCACCTTGAATGGCTGAAGAGGTGCCGTCGTTGTGCGGGCCGATCACTT
TATTTCCCGATGTCAATGTGTAATTTGAAAGGGCAACAGGGGCGCTGACA
CGCGTCGTGTGCCCACCAGGTTCAAATGATGGAACTGGCAAAAGACGGAG
GGAGGGAGGGAGGTAAAGAGACAGAGAGAGAGCGGTGATGTCCTGAGCAA
TGTAGATACTATTGTGCGGAACCACTCTACGCTCGCAGGTTTGTTGCTAG
ATCGAAAATTGAGTTGGTTTAGCCGTTGTTTCGTGTGTCACAATATATTT
GTTCTTGTGCTTTTTGTTTTTGGGTTGCGCTCGAGGGGTCCGTGTGAAAG
GAGGGAGGTAAGGACTTTGTAGGCCGCTTATTTCCTCTTTCGCGCACCCG
CAACCGGCCGATCTTTCGCCGCCGCCGCCGCCGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGTCAGTGTTGTTTTCGCCCCTGCTGGTGATGATGA
TGTTGCTGCTATTCAGCAGCGACGCAAGTGCGTTTTTGAAGGGGAGGGCG
AGTGTTGGATGCGTGTGTGGAGCTGCAGCGAGATTGACGGCCTCCGCGGG
AACCCCCAAGAGAGGGGCTTATGCACGATCGAACTTTTGGGAGATCGCAA
GCGTTTTGGATTCGGTTGTTGGGATGACGTCAATTTCGATGTGAAGGTGA
CCGTGTACATGGGACGGGCGGGATGGTGATAGATTCGGCGAGTGTTCCTG
TTGATGGGTTTCGGTTAAACGTACCCTACGTCCCATTCTTGTGTTTATTT
CTACGTGTGCGTCGGGTCGGCCGTGCTTGGGGCTGTTGCGGGACTGCCTA
CTTCTGCATACAGCAGTAGATGAGTGTTGACCCCATATATAAGCGATCTT
GAGAGTGTGCCCGGCCACGTTTCAAGAGCTGCTGTCACTGCTTGTGAGGT
CTGGCACGAGGAGGAGCGTCGTATTAAAAGGACCTGTACAGGCGGGGTTA
CGAGGAAGAGGAAGGTACACATGCGGCCCACCTACCAACACGCGATGGTG
GGATTTTGATGGAACGGGTGGGGTCGGTTGCAAGAGAAGAGCTGATCCAT
CCGCGGAGAGCAGTCGAGAAGCCCGACCGAGGAGAGCTGATACTATATTC
GACCGGAATGGATTGGGGCAGAATGAATCCGACAGGAATGAATTCGGTCG
GAATGTATCCGAGCAGATGAATTGGACGGGAACAAATACAATACCCCACC
GGAATGAATTAGACGGGAATGAATTCAAAGGGGTTAAGTTCGACCGCGCC
TCCGGGGGAGAGGCCGAGCGCGGTGCGATTTTTCGACCGCAAAGGTGGCC
GTCGTTTGTGTTGCGTGTGTCGCTCGTAAAAAGTTGCCTTCCGCAGAGGG
TTTGTAGGCTTGCGCTGTGTTGTTGCGGCGGCCGTTGTTCATGTTGAAGC
CGCGTATTGGTCGTCTCTCGCATGTGTAGCGCGAGACGCTTACAGTTGGC
AGCGGTTGGTTGGTCGCACTGCGATCCACCTCGGCGCACCCGGCAATCAG
TTGCGCATTGAAGTTACGTGTAGGAAATCATTCTAATAGTAGATACCTGC
GGCAGTTGTCGTGAACGCGTGATTGAATGGCCGCTTTGTCATGTTCAATA
TCAAGAAGTACTACGATACCCTTTCCAGTGTAATCTATTTAGTGTTCACG
TCTAGGCTGCAGGTTCATTCCTAAATGAGTGGAAGTACTTCTTT
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protein sequence of EsuBft891_9a-0001

>EsuBft891_9 ID=EsuBft891_9|Name=EsuBft891_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=200bp
MMATREVYPTAAIYTVCSVLFSGNFVLMRRSPSLKLASVWAAFVVTRCVL
FAGTVGWSHRVSFRENFFSSSSDDDDWARSSSSSSQNALEIADNAPASGG
VRMATAAPKATAVVQEDAADVLLSEAASSSSGSGLKPLLVLSRLTAGLAS
RRKLCAPTLPTLFGGELSLTAVGRLGRRGIMNEMGGGXXXXXXXXXXXXX
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mRNA from alignment at Scaffold_152:182422..186726-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft891_9a-0001 ID=EsuBft891_9a-0001|Name=EsuBft891_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4305bp|location=Sequence derived from alignment at Scaffold_152:182422..186726- (Ectocarpus subulatus male Bft15b)
GGTGCGATGATGGCGACGAGGGAGGTGTACCCCACGGCGGCGATCTACAC
GGTGTGCAGCGTTCTCTTCTCGGGGAACTTCGTGCTCATGAGGAGGTCGC
CGTCTCTCAAGCTTGCCTCAGTGTGGGCGGCCTTCGTGGTGTACCAGGCA
AGCTTGAGCTTCAGCTTTCGATTGTAAACATACTGGATGAAGTATGAAAT
CGGCTAAGTTGAGGTTGGGGTTAGGGTCTGTGTGCCCCCTCCTCCCCACG
TGATAACGAGTGGGCAGTCCTGTGCTTTTGACTAGGCCCTTTGTCTTTGC
CCGCACAAACGTATGGCACTCAATGTACCCGATGGGATGCCAACGTACGC
ACTTGTTGGTGTTCCTGCTTTCTTTTTCGGTTATCTCGAATCTTGTCTTT
TTTGGTGTGTCTACGTGTGTGAATTTTGTCTTTCAGAGGAAGGATACATC
CTTTGCTGGGCGTGGGCTCGTCTACCGTAGGGCCAGGCAGGCCGTCTTCA
AGCAGCGATAGAGACTAAACTGCGAAAGAAAATAGTGCATTGGTACACCT
GGTGTTGATGCCGTTCTTGTTTGTCTCCTTCCCTCTAACGCGGGGGCTGT
GTGGGGAAAAACGGAGAATCGGGCTTCAGTATTGGCCGGGGGATACGCTC
CCCCCCCAGGACTATCTGTTGCCATCCTAATGCGTATTACCCCCCTTCAT
ACAGCAGGTGACCCGTGCGCTACGCCCCCCCGCCCGGGACTATTTGTCTT
CATTCTAACCGCGTGGCCCCCTTTCTTCTTTTGATTTTGCTTACAGGTGA
CCCGGTGCGTGCTGTTCGCGGGCACCGTCGGCTGGTCCCACCGCGTGAGC
TTCCGGGAGAACTTCTTCTCGTCTTCATCCGACGACGACGACTGGGCCCG
AAGCAGCAGCAGCAGCAGCCAGAACGCCCTCGAAATCGCCGACAACGCCC
CCGCTTCCGGCGGCGTGAGGATGGCCACGGCGGCACCTAAGGCTACGGCG
GTAGTTCAGGAGGACGCCGCGGACGTGCTGCTGTCGGAAGCGGCTTCTTC
TTCTTCCGGTTCGGGCTTGAAGCCCCTGCTTGTCCTCTCCCGCTTGACGG
CCGGGTTGGCCTCGCGCCGCAAGCTGTGTGCTCCGACGTTGCCTACTTTG
TTTGGAGGTGAGGTTTGGGAAGCAACGCGTGGATGGATTGTGGTTTGGCG
GGGCGGCCGGGGGGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGTGCAACTTGCA
GTTGGTATGCTGGAGAATCGTCGTCGTTGTGGTTGTTGTCGTTGTTTGTG
TTGGTGCTGTTGCGGGCCTGTGGCTTATACGGCTGCTGCAGTCTCATTGA
TAGACCACTTCGCCATAATGTTTACTTGGCTGCCATTCCGTGTTTACGCA
ATTTTCCCGCACCCCCAGGAGTGGCGTCGTTGTTCCGGAGAAAGCGCGAC
TAGTTCCTCCTTACAACCGCGAAGACGTCACATCTTACCTGCGATGCTGG
AAGCGTGCGGGGCAGCTGTCGCTCACCGCTGTCGGGAGGCTGGGGCGCCG
CGGGATTATGAATGAGATGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGGGGGGGTCGTGTGTCGCATGCATTCATA
CCTAAATCGAGCGAGTGAATCGATTATTATGATGCCGAAGTGTATTGCAC
CGAGTGGAGTTGTCGTGATGCCGGGGTTGGAGGTGATGTACAGGAACTCC
CGGCGTCCCACCTAGAGAGAGGATTATGGTGTTGTACAGCAAGTTGTTTT
GGTGTGGTGTGCAGTTTACCGAAGGGAAAGAGGGGACGGGGGGGGTATGG
CACACACGTGACCCCGATGTACCGTTATATTGATCCTTGCACAACGCGGA
GCCCGCGGTGGCGGGAGCAGGACTTGATGACATGCACGGCATCCTCTTGA
TGTATTTGTTTTGGTGGTGTTTGTTAAAGGACATGTTTTGGTTCTCGCAG
GCAAGGGGAGGGACTGAGATTGGTCATAATTCACGGAATCCCGAGGCGCT
TGTTGATAGGTTTCCCATGGAAGGGGCTTTGCTCTCCTGAGGATGCGGGA
TTGGGTAACGAGGGGTTTGAGGACACGGATACCGTGTTTCTGTTGGTTGG
ACATCCACGCCACTAATTTTTTCCCGCACACAAACCCGTGGGTATGGTAA
TACAGGTGACGGTGAAACGTGACGGTTTTTTCTTGTTTCGGGAGTCGAGG
GGCGTGGTGTTGGGGGGGTCGCGGATGACCAAGCAATATGCTATGGTTTT
GTCCCTCCCCTATGGCGACTAATGTCTTTTCGTTGGTCACGGTGGCTATA
GCTAGCGCGTTTGATGTCCACTTAAGAATTAATCGAACACATGCAGTGGC
CACAGATATAACAGGACATAGATAGAGAGAGTGTGAAAGTCTGGGGGGGA
CAGAAAGCGCATGCCAGAAGGAGGAGGTCTGGCCCACCTTTAATGACACG
TTCGAGTCTGATCCACCTTGAATGGCTGAAGAGGTGCCGTCGTTGTGCGG
GCCGATCACTTTATTTCCCGATGTCAATGTGTAATTTGAAAGGGCAACAG
GGGCGCTGACACGCGTCGTGTGCCCACCAGGTTCAAATGATGGAACTGGC
AAAAGACGGAGGGAGGGAGGGAGGTAAAGAGACAGAGAGAGAGCGGTGAT
GTCCTGAGCAATGTAGATACTATTGTGCGGAACCACTCTACGCTCGCAGG
TTTGTTGCTAGATCGAAAATTGAGTTGGTTTAGCCGTTGTTTCGTGTGTC
ACAATATATTTGTTCTTGTGCTTTTTGTTTTTGGGTTGCGCTCGAGGGGT
CCGTGTGAAAGGAGGGAGGTAAGGACTTTGTAGGCCGCTTATTTCCTCTT
TCGCGCACCCGCAACCGGCCGATCTTTCGCCGCCGCCGCCGCCGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGTCAGTGTTGTTTTCGCCCCTGCT
GGTGATGATGATGTTGCTGCTATTCAGCAGCGACGCAAGTGCGTTTTTGA
AGGGGAGGGCGAGTGTTGGATGCGTGTGTGGAGCTGCAGCGAGATTGACG
GCCTCCGCGGGAACCCCCAAGAGAGGGGCTTATGCACGATCGAACTTTTG
GGAGATCGCAAGCGTTTTGGATTCGGTTGTTGGGATGACGTCAATTTCGA
TGTGAAGGTGACCGTGTACATGGGACGGGCGGGATGGTGATAGATTCGGC
GAGTGTTCCTGTTGATGGGTTTCGGTTAAACGTACCCTACGTCCCATTCT
TGTGTTTATTTCTACGTGTGCGTCGGGTCGGCCGTGCTTGGGGCTGTTGC
GGGACTGCCTACTTCTGCATACAGCAGTAGATGAGTGTTGACCCCATATA
TAAGCGATCTTGAGAGTGTGCCCGGCCACGTTTCAAGAGCTGCTGTCACT
GCTTGTGAGGTCTGGCACGAGGAGGAGCGTCGTATTAAAAGGACCTGTAC
AGGCGGGGTTACGAGGAAGAGGAAGGTACACATGCGGCCCACCTACCAAC
ACGCGATGGTGGGATTTTGATGGAACGGGTGGGGTCGGTTGCAAGAGAAG
AGCTGATCCATCCGCGGAGAGCAGTCGAGAAGCCCGACCGAGGAGAGCTG
ATACTATATTCGACCGGAATGGATTGGGGCAGAATGAATCCGACAGGAAT
GAATTCGGTCGGAATGTATCCGAGCAGATGAATTGGACGGGAACAAATAC
AATACCCCACCGGAATGAATTAGACGGGAATGAATTCAAAGGGGTTAAGT
TCGACCGCGCCTCCGGGGGAGAGGCCGAGCGCGGTGCGATTTTTCGACCG
CAAAGGTGGCCGTCGTTTGTGTTGCGTGTGTCGCTCGTAAAAAGTTGCCT
TCCGCAGAGGGTTTGTAGGCTTGCGCTGTGTTGTTGCGGCGGCCGTTGTT
CATGTTGAAGCCGCGTATTGGTCGTCTCTCGCATGTGTAGCGCGAGACGC
TTACAGTTGGCAGCGGTTGGTTGGTCGCACTGCGATCCACCTCGGCGCAC
CCGGCAATCAGTTGCGCATTGAAGTTACGTGTAGGAAATCATTCTAATAG
TAGATACCTGCGGCAGTTGTCGTGAACGCGTGATTGAATGGCCGCTTTGT
CATGTTCAATATCAAGAAGTACTACGATACCCTTTCCAGTGTAATCTATT
TAGTGTTCACGTCTAGGCTGCAGGTTCATTCCTAAATGAGTGGAAGTACT
TCTTT
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Coding sequence (CDS) from alignment at Scaffold_152:182422..186726-

>EsuBft891_9a-0001 ID=EsuBft891_9a-0001|Name=EsuBft891_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=600bp|location=Sequence derived from alignment at Scaffold_152:182422..186726- (Ectocarpus subulatus male Bft15b)
ATGATGGCGACGAGGGAGGTGTACCCCACGGCGGCGATCTACACGGTGTG
CAGCGTTCTCTTCTCGGGGAACTTCGTGCTCATGAGGAGGTCGCCGTCTC
TCAAGCTTGCCTCAGTGTGGGCGGCCTTCGTGGTGACCCGGTGCGTGCTG
TTCGCGGGCACCGTCGGCTGGTCCCACCGCGTGAGCTTCCGGGAGAACTT
CTTCTCGTCTTCATCCGACGACGACGACTGGGCCCGAAGCAGCAGCAGCA
GCAGCCAGAACGCCCTCGAAATCGCCGACAACGCCCCCGCTTCCGGCGGC
GTGAGGATGGCCACGGCGGCACCTAAGGCTACGGCGGTAGTTCAGGAGGA
CGCCGCGGACGTGCTGCTGTCGGAAGCGGCTTCTTCTTCTTCCGGTTCGG
GCTTGAAGCCCCTGCTTGTCCTCTCCCGCTTGACGGCCGGGTTGGCCTCG
CGCCGCAAGCTGTGTGCTCCGACGTTGCCTACTTTGTTTGGAGGTGAGCT
GTCGCTCACCGCTGTCGGGAGGCTGGGGCGCCGCGGGATTATGAATGAGA
TGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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