EsuBft891_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft891_8a-0001
Unique NameEsuBft891_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_152contigScaffold_152:186986..188730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft891_8
Protein domainsCoil
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteprobable rna-directed dna polymerase from transposon x-element os:drosophila melanogaster gn:x- [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1431
Evalue1.25e-127
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0016779
GO0006278
GO0004519
GO0032197
GO0090305
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft891_8aEsuBft891_8aEctocarpus subulatus male Bft15bgeneScaffold_152 186986..188730 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft891_8a-0001-exonagat-exon-99056Ectocarpus subulatus male Bft15bexonScaffold_152 186986..187020 +
EsuBft891_8a-0001-exonagat-exon-99057Ectocarpus subulatus male Bft15bexonScaffold_152 187108..187631 +
EsuBft891_8a-0001-exonEsuBft891_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_152 187814..188462 +
EsuBft891_8a-0001-exonagat-exon-99055Ectocarpus subulatus male Bft15bexonScaffold_152 188508..188730 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft891_8a-0001-cdsEsuBft891_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_152 186986..187020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft891_8a-0001EsuBft891_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_152 186986..188730 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft891_8a-0001 ID=EsuBft891_8a-0001|Name=EsuBft891_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1431bp|location=Sequence derived from alignment at Scaffold_152:186986..188730+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAGGAAGAAATCCCCCCCCTCCCCCCCCCGGGAAGGATTGGTTGT
GAACTTGTTCAAGAAAGGAGACAAGACTGACCCAGGAAACTACAGGGGGA
TCACACTGTTGAACACAGTAGGAAAAGTGTTCTGTAAGCTGCTGAACGAT
AGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGGGCCAGGC
AGGTTTCCGCAAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGGGA
GAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTC
CTGGACGTGAAAAAGGCATACGACACCGTATGGAGAAATGGGTTGTGGAA
ACAACTGTCCAAATACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGA
AGATGACAGAGTGCACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCA
AAATTCTTTGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCC
ATCATCGTTCCAGGTGCTCATCAACANCGGGAAAGCCGACGTACTGCTTC
TTTCTGGACGAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATG
AACGCAGCGAAAATTATCCTAGGAGGCTCCACGCGCACAAGTAATGCAGC
CGTGAGGGCAGAATTGGGGATCCAATCCCTACGGTCGGGAAGAGACGCGA
GGAAGCTGACCTGGCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTG
CCGAGGATTGTATGGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACA
ACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACA
TCGACGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAG
AAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGA
ATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAA
TAGGGTTCAAGGACTACCTACATGGACCAATGGATGCAGGAACAAAGCTT
AAGGTCAAATTCAGGACCGGCGACATAGGCCTTCGAGAACGTCGAGAAAT
ACATTGTCGACGGACGGTAGACGATGAAGACAAGTTCTGTGATTGCGGCT
TCGAATGCGAAGACCGTGTTCATGTAGTCGCGGAATGTCCGTGTTACAAG
AAGGAGAGGGAGATGTTTGAGGCATGGAATAGAGAGGAAAGGACGGTAGC
TGTACTGGGGCATAGGAGGTGGGTTGAAAAGGCGGGAAGGGATATCGTTA
GGATAGACAGACTAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTAGG
AAGGAACGATTGGCCATCGGTGATCGGTCCTGTGGGAACAATGCTCCGTC
CTCTCGAGGTCGCGTGGCTGATGGTCTNNNN
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protein sequence of EsuBft891_8a-0001

>EsuBft891_8 ID=EsuBft891_8|Name=EsuBft891_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=477bp
MDRKKSPPSPPREGLVVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLND
RIVGVLEKEHSISEGQAGFRKKRGCVDHVFTVGRIIQGRKRAGKPTYCFF
LDVKKAYDTVWRNGLWKQLSKYGIKGKMWRVLKKMTECTKSAVMLDGELS
KFFDIEQGVPQGCTLSPSSFQVLINXGKADVLLLSGRNKKVVKELEAAQM
NAAKIILGGSTRTSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERL
PRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKE
KISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKL
KVKFRTGDIGLRERREIHCRRTVDDEDKFCDCGFECEDRVHVVAECPCYK
KEREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSR
KERLAIGDRSCGNNAPSSRGRVADGLX
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mRNA from alignment at Scaffold_152:186986..188730+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft891_8a-0001 ID=EsuBft891_8a-0001|Name=EsuBft891_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1745bp|location=Sequence derived from alignment at Scaffold_152:186986..188730+ (Ectocarpus subulatus male Bft15b)
ATGGATAGGAAGAAATCCCCCCCCTCCCCCCCCCGGTGTTTGCCATCGGG
GTTGGGTTTTCGTCGCTTGGCAACGACGTTGTACAACAAGCCCCCCCTCG
GTGTTACGCCAAGTAGATGAAGGGAAGGATTGGTTGTGAACTTGTTCAAG
AAAGGAGACAAGACTGACCCAGGAAACTACAGGGGGATCACACTGTTGAA
CACAGTAGGAAAAGTGTTCTGTAAGCTGCTGAACGATAGGATAGTGGGAG
TATTGGAGAAGGAACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGCAAG
AAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGGGAGAATCATCCAAGG
TAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAA
AGGCATACGACACCGTATGGAGAAATGGGTTGTGGAAACAACTGTCCAAA
TACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGAAGATGACAGAGTG
CACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCAAAATTCTTTGACA
TTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCATCATCGTTCCAG
GTGCTCATCAACANCGGGAAAGCCGACGTACTGCTTCTTTCTGGACGTGA
AAAAGGCATACGACGCCGTTTGGAGAAATGGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAGGAAATAAGAAGGTAGTGAAAGA
ACTCGAGGCGGCGCAGATGAACGCAGCGAAAATTATCCTAGGAGGCTCCA
CGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCCTA
CGGTCGGGAAGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGCGG
GATGGGAGAGGAGAGGTTGCCGAGGATTGTATGGGAGGCGAAGTGGGCAA
ACAAAAAGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGAC
GTATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGG
TCTACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAG
AACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTAC
GGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAAT
GGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGCGACATAGGCC
TTCGAGAACGTCGAGAAATACATTGTCGACGGACGGTAGACGATGAAGAC
AAGTTCTGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGC
GGAATGTCCGTGTTACAAGAAGGAGAGGTAAGTGTACGTGACTGAGCTGG
GAAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGGAATAGAGAG
GAAAGGACGGTAGCTGTACTGGGGCATAGGAGGTGGGTTGAAAAGGCGGG
AAGGGATATCGTTAGGATAGACAGACTAGGGAAGACATTTTTGAGCCACC
TTTGGCAAAGTAGGAAGGAACGATTGGCCATCGGTGATCGGTCCTGTGGG
AACAATGCTCCGTCCTCTCGAGGTCGCGTGGCTGATGGTCTNNNN
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Coding sequence (CDS) from alignment at Scaffold_152:186986..188730+

>EsuBft891_8a-0001 ID=EsuBft891_8a-0001|Name=EsuBft891_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1431bp|location=Sequence derived from alignment at Scaffold_152:186986..188730+ (Ectocarpus subulatus male Bft15b)
ATGGATAGGAAGAAATCCCCCCCCTCCCCCCCCCGGGAAGGATTGGTTGT
GAACTTGTTCAAGAAAGGAGACAAGACTGACCCAGGAAACTACAGGGGGA
TCACACTGTTGAACACAGTAGGAAAAGTGTTCTGTAAGCTGCTGAACGAT
AGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGGGCCAGGC
AGGTTTCCGCAAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAGGGA
GAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTC
CTGGACGTGAAAAAGGCATACGACACCGTATGGAGAAATGGGTTGTGGAA
ACAACTGTCCAAATACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGA
AGATGACAGAGTGCACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCA
AAATTCTTTGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCC
ATCATCGTTCCAGGTGCTCATCAACANCGGGAAAGCCGACGTACTGCTTC
TTTCTGGACGAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATG
AACGCAGCGAAAATTATCCTAGGAGGCTCCACGCGCACAAGTAATGCAGC
CGTGAGGGCAGAATTGGGGATCCAATCCCTACGGTCGGGAAGAGACGCGA
GGAAGCTGACCTGGCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTG
CCGAGGATTGTATGGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACA
ACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACA
TCGACGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAG
AAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGA
ATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAA
TAGGGTTCAAGGACTACCTACATGGACCAATGGATGCAGGAACAAAGCTT
AAGGTCAAATTCAGGACCGGCGACATAGGCCTTCGAGAACGTCGAGAAAT
ACATTGTCGACGGACGGTAGACGATGAAGACAAGTTCTGTGATTGCGGCT
TCGAATGCGAAGACCGTGTTCATGTAGTCGCGGAATGTCCGTGTTACAAG
AAGGAGAGGGAGATGTTTGAGGCATGGAATAGAGAGGAAAGGACGGTAGC
TGTACTGGGGCATAGGAGGTGGGTTGAAAAGGCGGGAAGGGATATCGTTA
GGATAGACAGACTAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTAGG
AAGGAACGATTGGCCATCGGTGATCGGTCCTGTGGGAACAATGCTCCGTC
CTCTCGAGGTCGCGTGGCTGATGGTCTNNNN
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