EsuBft890_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft890_9a-0001
Unique Name	EsuBft890_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_178	contig	Scaffold_178:152202..154012 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft890_9
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	172
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft890_9a	EsuBft890_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_178 152202..154012 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft890_9a-0001-exon	agat-exon-20277	Ectocarpus subulatus male Bft15b	exon	Scaffold_178 152202..153406 +
EsuBft890_9a-0001-exon	EsuBft890_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_178 153495..154012 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft890_9a-0001-exon	agat-five_prime_utr-14766	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_178 152202..152625 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft890_9a-0001-cds	EsuBft890_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_178 152626..153406 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft890_9a-0001	EsuBft890_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_178 152626..154012 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_178:152202..154012+
coding sequence from alignment at Scaffold_178:152202..154012+

spliced messenger RNA

>EsuBft890_9a-0001 ID=EsuBft890_9a-0001|Name=EsuBft890_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1723bp|location=Sequence derived from alignment at Scaffold_178:152202..154012+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GCGAAGACAGTCTGATCCTGGAGTTAGGAATACTCAGATCGGAGCCGAGA
AAAAAACACGCAAGAAACCTTGTAGGCGTGCGGAGTGCGGTTGGTTCACA
AACAACCCGGGTCTCGAATGCAGCATGTGCCCCTCAGGCGCAGTGCACGC
CGTCAGTGATAAGCTATGCTCCGCATGCCATAGGTCGGAGGGCTTAGCTG
GCTTCACGCACCTCAGAGGGCCACGGCTTGAACGAGCGACACGGTTGTTT
TTTGCCGAGTACCAAGAAGGAGAGGGGGAGCTGCCTCTACCTCTCGTCCG
AGGATTTTGTCCCAGCAACGACTGCATTTGCCAACGCCGAGATTGTTTCT
ACGGTTGTCTTCTCGAGAGGGAAGAAAAGCCGGAGCTCCCAACATGTAGC
GTGTGCAAGAGAGGGTACCCTGTGAAGGACCAGAAGAGGTGGTACAGTGT
GGACGTGGTGGACGATAACATAACGGAGGGTGGTGGATCAGGACGCACAC
AAGCTTGGTACTGCCAGGCCTGCAATCAAGCTCGAATCCGGGCCATCGGA
GAAGCTACTCAAAAAAGGTTGCGGCATCGAGCAACTCGGGCCGACCTAAA
GCCGATGAACCGGCGCCGGAGAAGGGTCACTAAAAAAGAAGAGGAGGAGC
TTGTCAGCGNAGACGAGGTTATCGCATCCCTCGCCCCACGGGCGCGCCGG
GCGAACACGTCCGATGGTCCGAGCACGCCCGCAAACGCCACGTCCGGTGG
AAATACGTCTCTGCAGATAGTGAGGCGTCTTCTCGAAGAAGCGAAAGAGG
CAGACGCGAGGATGAGATCGTGCGTGCGGCGGCGGAAATTGTTCGGGCCA
ATGTCGATCAGCATTCAGATCTCAAGAATGCCCGCATCCGACGGAAAAAT
CACAAACGGTCCACAGCCAAGCGCAGCGGGGAGTGTACGGCGAGAGGATG
ATGGGAGCGATGGAGCCGACGCGCTTGAAGGAGCCGCCTGTGAGCGGCAA
GCCCCCACTCGCGATGCCACTCGGGCAGAAGAGGTGGATTCTGCTGGGCC
GGCTTCCGAGGCAGCTGCCACTTTCATCGAAAAAACCAACCAGGATAGGC
GAGGCTTCGCACGGCGTTTGTACATGCTTTGCAAGTGCACGGTGAAGGCG
ATTTTTCCTGGTCGACACTTGACAGCGGCGGACATCAAAGGTGCTCAGTG
GGCGAAGTCAAAGGGGACCTGCCGGCAGGTTATCGACTTTGTAGCAGGGC
ACGGCTTGTGGGCTACGACTTCACAAGTGCAGCATCGAGAGGACTATCAT
GCGAAGGTCGTTGAGGACAAGGACATTCTCCCCAAGGGGGCCCAATGCGC
GGCGATTGCAAACGACAACACGACCTGCGGGTCGGTGAGCGCCAGGGGGA
AGGACCGCATATTTCGTTCATAG

protein sequence of EsuBft890_9a-0001

>EsuBft890_9 ID=EsuBft890_9|Name=EsuBft890_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=432bp
MCPSGAVHAVSDKLCSACHRSEGLAGFTHLRGPRLERATRLFFAEYQEGE
GELPLPLVRGFCPSNDCICQRRDCFYGCLLEREEKPELPTCSVCKRGYPV
KDQKRWYSVDVVDDNITEGGGSGRTQAWYCQACNQARIRAIGEATQKRLR
HRATRADLKPMNRRRRRVTKKEEEELVSXDEVIASLAPRARRANTSDGPS
TPANATSGGNTSLQIVRRLLEEAKEADARMRSCVRRRKLFGPMSISIQIS
RMPASDGKITNGPQPSAAGSVRREDDGSDGADALEGAACERQAPTRDATR
AEEVDSAGPASEAAATFIEKTNQDRRGFARRLYMLCKCTVKAIFPGRHLT
AADIKGAQWAKSKGTCRQVIDFVAGHGLWATTSQVQHREDYHAKVVEDKD
ILPKGAQCAAIANDNTTCGSVSARGKDRIFRS

mRNA from alignment at Scaffold_178:152202..154012+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft890_9a-0001 ID=EsuBft890_9a-0001|Name=EsuBft890_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1811bp|location=Sequence derived from alignment at Scaffold_178:152202..154012+ (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GCGAAGACAGTCTGATCCTGGAGTTAGGAATACTCAGATCGGAGCCGAGA
AAAAAACACGCAAGAAACCTTGTAGGCGTGCGGAGTGCGGTTGGTTCACA
AACAACCCGGGTCTCGAATGCAGCATGTGCCCCTCAGGCGCAGTGCACGC
CGTCAGTGATAAGCTATGCTCCGCATGCCATAGGTCGGAGGGCTTAGCTG
GCTTCACGCACCTCAGAGGGCCACGGCTTGAACGAGCGACACGGTTGTTT
TTTGCCGAGTACCAAGAAGGAGAGGGGGAGCTGCCTCTACCTCTCGTCCG
AGGATTTTGTCCCAGCAACGACTGCATTTGCCAACGCCGAGATTGTTTCT
ACGGTTGTCTTCTCGAGAGGGAAGAAAAGCCGGAGCTCCCAACATGTAGC
GTGTGCAAGAGAGGGTACCCTGTGAAGGACCAGAAGAGGTGGTACAGTGT
GGACGTGGTGGACGATAACATAACGGAGGGTGGTGGATCAGGACGCACAC
AAGCTTGGTACTGCCAGGCCTGCAATCAAGCTCGAATCCGGGCCATCGGA
GAAGCTACTCAAAAAAGGTTGCGGCATCGAGCAACTCGGGCCGACCTAAA
GCCGATGAACCGGCGCCGGAGAAGGGTCACTAAAAAAGAAGAGGAGGAGC
TTGTCAGCGNAGACGAGGTTATCGCATCCCTCGCCCCACGGGCGCGCCGG
GCGAACACGTCCGATGGTCCGAGCACGCCCGCAAACGCCACGTCCGGTGG
AAATACGTCTCTGCAGATAGTGAGGCGTCTTCTCGAAGAAGCGAAAGAGG
CAGACGCGAGGATGAGATCGTGCGTGCGGCGGCGGAAATTGTTCGGGCCA
ATGTCGATCAGCATTCAGATCTCAAGAATGCCCGCATCCGACGGAAAAAT
CACAAGTACAGCGTGGAGTTGGCCGCACCCGTGAAACCAGTGCGAGATGC
CCTAGCTGAGATGCCCCCGACATTGGTTGGACTCTTAAAACAGACGGTCC
ACAGCCAAGCGCAGCGGGGAGTGTACGGCGAGAGGATGATGGGAGCGATG
GAGCCGACGCGCTTGAAGGAGCCGCCTGTGAGCGGCAAGCCCCCACTCGC
GATGCCACTCGGGCAGAAGAGGTGGATTCTGCTGGGCCGGCTTCCGAGGC
AGCTGCCACTTTCATCGAAAAAACCAACCAGGATAGGCGAGGCTTCGCAC
GGCGTTTGTACATGCTTTGCAAGTGCACGGTGAAGGCGATTTTTCCTGGT
CGACACTTGACAGCGGCGGACATCAAAGGTGCTCAGTGGGCGAAGTCAAA
GGGGACCTGCCGGCAGGTTATCGACTTTGTAGCAGGGCACGGCTTGTGGG
CTACGACTTCACAAGTGCAGCATCGAGAGGACTATCATGCGAAGGTCGTT
GAGGACAAGGACATTCTCCCCAAGGGGGCCCAATGCGCGGCGATTGCAAA
CGACAACACGACCTGCGGGTCGGTGAGCGCCAGGGGGAAGGACCGCATAT
TTCGTTCATAG

Coding sequence (CDS) from alignment at Scaffold_178:152202..154012+

>EsuBft890_9a-0001 ID=EsuBft890_9a-0001|Name=EsuBft890_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1299bp|location=Sequence derived from alignment at Scaffold_178:152202..154012+ (Ectocarpus subulatus male Bft15b)
ATGTGCCCCTCAGGCGCAGTGCACGCCGTCAGTGATAAGCTATGCTCCGC
ATGCCATAGGTCGGAGGGCTTAGCTGGCTTCACGCACCTCAGAGGGCCAC
GGCTTGAACGAGCGACACGGTTGTTTTTTGCCGAGTACCAAGAAGGAGAG
GGGGAGCTGCCTCTACCTCTCGTCCGAGGATTTTGTCCCAGCAACGACTG
CATTTGCCAACGCCGAGATTGTTTCTACGGTTGTCTTCTCGAGAGGGAAG
AAAAGCCGGAGCTCCCAACATGTAGCGTGTGCAAGAGAGGGTACCCTGTG
AAGGACCAGAAGAGGTGGTACAGTGTGGACGTGGTGGACGATAACATAAC
GGAGGGTGGTGGATCAGGACGCACACAAGCTTGGTACTGCCAGGCCTGCA
ATCAAGCTCGAATCCGGGCCATCGGAGAAGCTACTCAAAAAAGGTTGCGG
CATCGAGCAACTCGGGCCGACCTAAAGCCGATGAACCGGCGCCGGAGAAG
GGTCACTAAAAAAGAAGAGGAGGAGCTTGTCAGCGNAGACGAGGTTATCG
CATCCCTCGCCCCACGGGCGCGCCGGGCGAACACGTCCGATGGTCCGAGC
ACGCCCGCAAACGCCACGTCCGGTGGAAATACGTCTCTGCAGATAGTGAG
GCGTCTTCTCGAAGAAGCGAAAGAGGCAGACGCGAGGATGAGATCGTGCG
TGCGGCGGCGGAAATTGTTCGGGCCAATGTCGATCAGCATTCAGATCTCA
AGAATGCCCGCATCCGACGGAAAAATCACAAACGGTCCACAGCCAAGCGC
AGCGGGGAGTGTACGGCGAGAGGATGATGGGAGCGATGGAGCCGACGCGC
TTGAAGGAGCCGCCTGTGAGCGGCAAGCCCCCACTCGCGATGCCACTCGG
GCAGAAGAGGTGGATTCTGCTGGGCCGGCTTCCGAGGCAGCTGCCACTTT
CATCGAAAAAACCAACCAGGATAGGCGAGGCTTCGCACGGCGTTTGTACA
TGCTTTGCAAGTGCACGGTGAAGGCGATTTTTCCTGGTCGACACTTGACA
GCGGCGGACATCAAAGGTGCTCAGTGGGCGAAGTCAAAGGGGACCTGCCG
GCAGGTTATCGACTTTGTAGCAGGGCACGGCTTGTGGGCTACGACTTCAC
AAGTGCAGCATCGAGAGGACTATCATGCGAAGGTCGTTGAGGACAAGGAC
ATTCTCCCCAAGGGGGCCCAATGCGCGGCGATTGCAAACGACAACACGAC
CTGCGGGTCGGTGAGCGCCAGGGGGAAGGACCGCATATTTCGTTCATAG