EsuBft890_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft890_6a-0001
Unique NameEsuBft890_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_178contigScaffold_178:132835..134271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LTN0
ProteomeIdEsuBft890_6
Protein domainsIPR027417
Protein domainsIPR001019
Protein domainsPTHR10218
Ownerapollo_admin@sb-roscoff.fr
Noteguanine nucleotide-binding protein alpha-1 subunit os:ustilago maydis (strain 521 fgsc 9021) gn:gpa1 pe:3 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length636
Hectar predicted targeting categoryother localisation
Evalue2.65e-24
EggNOG OGsKOG0082@1|root,KOG0082@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred namegpaH
KEGG koko:K04630
KEGG Pathwayko04015,ko04022,ko04024,ko04062,ko04071,ko04261,ko04360,ko04371,ko04540,ko04611,ko04670,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04914,ko04915,ko04916,ko04921,ko04923,ko04924,ko04926,ko04934,ko04971,ko05012,ko05030,ko05032,ko05034,ko05133,ko05142,ko05145,ko05200,map04015,map04022,map04024,map04062,map04071,map04261,map04360,map04371,map04540,map04611,map04670,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04914,map04915,map04916,map04921,map04923,map04924,map04926,map04934,map04971,map05012,map05030,map05032,map05034,map05133,map05142,map05145,map05200
KEGG ModuleM00695
GOsGO:0001664,GO:0003674,GO:0003824,GO:0003924,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005834,GO:0005886,GO:0007154,GO:0007165,GO:0007186,GO:0007187,GO:0007188,GO:0008150,GO:0009898,GO:0009966,GO:0009987,GO:0010469,GO:0010646,GO:0010810,GO:0010811,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019897,GO:0019898,GO:0022407,GO:0022409,GO:0023051,GO:0023052,GO:0030155,GO:0031234,GO:0031683,GO:0032092,GO:0032101,GO:0032103,GO:0032991,GO:0040012,GO:0040017,GO:0043393,GO:0043937,GO:0043938,GO:0044093,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044877,GO:0045595,GO:0045785,GO:0048518,GO:0048519,GO:0048583,GO:0048584,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050920,GO:0050921,GO:0050923,GO:0050924,GO:0051094,GO:0051098,GO:0051099,GO:0051716,GO:0065007,GO:0065009,GO:0071944,GO:0098552,GO:0098562,GO:0098796,GO:0098797,GO:1900120,GO:1900122,GO:1902494,GO:1903664,GO:1903665,GO:1903667,GO:1903669,GO:1905360
DescriptionG-protein beta/gamma-subunit complex binding
COG categoryV
BRITEko00000,ko00001,ko00002,ko04031,ko04147
Cross References
External references for this mRNA
DatabaseAccession
GO0001664
GO0055085
GO0005856
GO0031683
GO0003924
GO0007188
GO0019001
GO0043234
GO0010033
GO0006936
GO0004871
GO0044767
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft890_6aEsuBft890_6aEctocarpus subulatus male Bft15bgeneScaffold_178 132835..134271 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft890_6a-0001EsuBft890_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_178 132835..133383 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft890_6a-0001-exonagat-exon-20258Ectocarpus subulatus male Bft15bexonScaffold_178 132835..132987 -
EsuBft890_6a-0001-exonagat-exon-20257Ectocarpus subulatus male Bft15bexonScaffold_178 133339..133684 -
EsuBft890_6a-0001-exonEsuBft890_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_178 134135..134271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft890_6a-0001-cdsEsuBft890_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_178 132835..132987 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft890_6a-0001-exonagat-five_prime_utr-14763Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_178 133384..133684 -
EsuBft890_6a-0001-exonagat-five_prime_utr-14764Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_178 134135..134271 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft890_6a-0001 ID=EsuBft890_6a-0001|Name=EsuBft890_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=636bp|location=Sequence derived from alignment at Scaffold_178:132835..134271- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TACGCACAACGGAGCTGCAAGAGGCCGAAGAAAGCGTGGTGTGTGGGGGG
GCCGACGAAGTAAACGCTCGGTGCTCCGATGGCAACGCCAGACACACGTT
TGAATCCAATCAGCTCTGAGGGTTGGTGAAAATACAGCTGCGGGCGGGCG
TGTTTCGGGCACATCAAAGGGAGAGGGGCCTTTCGTACCAGTCAATCCAT
CTCCGGGCTCTCACGTACAGCTCCACCACAAGCACCGATACCAACCACAC
ACCGCCAACCTTCGGGAAGTTGTTCTTCATCAACCAGCACGTGTGTGTAT
CGAGGGGCACGCGTGCTGGTAGCTCGACGGGAGCGGCTTAGTTGGGGCGA
TCGGTGGCCCACCTGTCGCAAACGCTCGTATAACAGCAACAGTGGAGCTG
TTCCGCGCCCGCGGAGAGGGGGTGGCGCGAAGACTACCATGGGATGCGTC
AACTCAATTCGGATAATGGACGCCGATGCTGCGACAAATGCGGTGGACAA
GCAGCTAGAGGACCTCGCCTTAGCAGATCAGCGGCACGTCAAGGTGTTAC
TCCTGGGTGCAGGAGAGTCGGGAAAGAGCACCGTGGTCAAGCAGGCAAGC
AAAGGCGGCATATTGAACGTGCTGTGCACCCCCTAA
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protein sequence of EsuBft890_6a-0001

>EsuBft890_6 ID=EsuBft890_6|Name=EsuBft890_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=65bp
MGCVNSIRIMDADAATNAVDKQLEDLALADQRHVKVLLLGAGESGKSTVV
KQASKGGILNVLCTP
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mRNA from alignment at Scaffold_178:132835..134271-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft890_6a-0001 ID=EsuBft890_6a-0001|Name=EsuBft890_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1437bp|location=Sequence derived from alignment at Scaffold_178:132835..134271- (Ectocarpus subulatus male Bft15b)
TACGCACAACGGAGCTGCAAGAGGCCGAAGAAAGCGTGGTGTGTGGGGGG
GCCGACGAAGTAAACGCTCGGTGCTCCGATGGCAACGCCAGACACACGTT
TGAATCCAATCAGCTCTGAGGGTTGGTGAAAATACAGGTGAGTTTGTTGC
GTCGTCGCGACAATTGTGCCCCGCGAAGCGTGCCGACGCTTGGATGGGTG
TACGTTCGTTCCGTGGGCGGACTGGATAGAAAAGGCTTTCGCTCACGGCA
TACCCTACGGCACACCGTGTTGACCTTGTCTGGACACGTGTCTCGCTTCA
CGTTGGGGTATTAACCAGCAAAGGGGCACGCCTTTACAGCAGGCTACACG
TCTGTACACTGGTAGGTGGGAAAGCACATGCTATTCTCGACACGTCAAGA
TGCTGCAAATTAATCAAAGAGTGCTTCTATACACCCCGCAACATCGCTCC
TTATAGCACTCCAAAGCCTAGTCCTCACAGCAGTTTCGTGGGCGCTACCC
CCCCCCTGTTTCTAAAGACTCCAATATATGTACACCGCGCGCTCAACCTG
ACCACTCTTGCTCAACACGTACTACACTTCTTGGAAGCTGCGGGCGGGCG
TGTTTCGGGCACATCAAAGGGAGAGGGGCCTTTCGTACCAGTCAATCCAT
CTCCGGGCTCTCACGTACAGCTCCACCACAAGCACCGATACCAACCACAC
ACCGCCAACCTTCGGGAAGTTGTTCTTCATCAACCAGCACGTGTGTGTAT
CGAGGGGCACGCGTGCTGGTAGCTCGACGGGAGCGGCTTAGTTGGGGCGA
TCGGTGGCCCACCTGTCGCAAACGCTCGTATAACAGCAACAGTGGAGCTG
TTCCGCGCCCGCGGAGAGGGGGTGGCGCGAAGACTACCATGGGATGCGTC
AACTCAATTCGGATAATGGACGCCGATGCTGCGGTGAGTAAACCAAACAC
CGTGTGCATCGACTGGTTGGCGTTAGTTCTAGACTATTATCGTCTCTACA
GTACATAGTCTACAGTATGTTACAGCTTGCTTGGTTTGACGTAGCTGACA
CCAAACATCAAACGTGGATTTCTCTACATTGGTTTAGAGAAGACAACAAC
AGCAGCAGTTAATATTCCCAGGTCTATTGTTGAAGTCGTACCAGCGAACA
GAGACATGGATCGTGCAACAGGCAGTAAGGGGCATCATTCCCTCAAACAA
GTCGCGGAAAACGCTTTGCTTCATCAACGGAGCGATATGTGTCCACTTAA
GGTTTCGGCACTCTCCTTCTCTTGATTTCTACAGACAAATGCGGTGGACA
AGCAGCTAGAGGACCTCGCCTTAGCAGATCAGCGGCACGTCAAGGTGTTA
CTCCTGGGTGCAGGAGAGTCGGGAAAGAGCACCGTGGTCAAGCAGGCAAG
CAAAGGCGGCATATTGAACGTGCTGTGCACCCCCTAA
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Coding sequence (CDS) from alignment at Scaffold_178:132835..134271-

>EsuBft890_6a-0001 ID=EsuBft890_6a-0001|Name=EsuBft890_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=198bp|location=Sequence derived from alignment at Scaffold_178:132835..134271- (Ectocarpus subulatus male Bft15b)
ATGGGATGCGTCAACTCAATTCGGATAATGGACGCCGATGCTGCGACAAA
TGCGGTGGACAAGCAGCTAGAGGACCTCGCCTTAGCAGATCAGCGGCACG
TCAAGGTGTTACTCCTGGGTGCAGGAGAGTCGGGAAAGAGCACCGTGGTC
AAGCAGGCAAGCAAAGGCGGCATATTGAACGTGCTGTGCACCCCCTAA
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