EsuBft890_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft890_5a-0001
Unique NameEsuBft890_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_178contigScaffold_178:125875..127620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LTN0
ProteomeIdEsuBft890_5
Protein domainsIPR027417
Protein domainsPTHR10218
Protein domainsIPR001019
Ownerapollo_admin@sb-roscoff.fr
Noteguanine nucleotide-binding protein alpha-8 subunit os:dictyostelium discoideum gn:gpah pe:2 sv: [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length593
Hectar predicted targeting categoryother localisation
Evalue4.81e-87
EggNOG OGsKOG0082@1|root,KOG0082@2759|Eukaryota
Ec32 ortholog descriptionGPA5, alpha subunit of a heterotrimeric G protein
Ec32 orthologEc-28_003480.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred namegpaH
KEGG koko:K04630
KEGG Pathwayko04015,ko04022,ko04024,ko04062,ko04071,ko04261,ko04360,ko04371,ko04540,ko04611,ko04670,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04914,ko04915,ko04916,ko04921,ko04923,ko04924,ko04926,ko04934,ko04971,ko05012,ko05030,ko05032,ko05034,ko05133,ko05142,ko05145,ko05200,map04015,map04022,map04024,map04062,map04071,map04261,map04360,map04371,map04540,map04611,map04670,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04914,map04915,map04916,map04921,map04923,map04924,map04926,map04934,map04971,map05012,map05030,map05032,map05034,map05133,map05142,map05145,map05200
KEGG ModuleM00695
GOsGO:0001664,GO:0003674,GO:0003824,GO:0003924,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005834,GO:0005886,GO:0007154,GO:0007165,GO:0007186,GO:0007187,GO:0007188,GO:0008150,GO:0009898,GO:0009966,GO:0009987,GO:0010469,GO:0010646,GO:0010810,GO:0010811,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019897,GO:0019898,GO:0022407,GO:0022409,GO:0023051,GO:0023052,GO:0030155,GO:0031234,GO:0031683,GO:0032092,GO:0032101,GO:0032103,GO:0032991,GO:0040012,GO:0040017,GO:0043393,GO:0043937,GO:0043938,GO:0044093,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044877,GO:0045595,GO:0045785,GO:0048518,GO:0048519,GO:0048583,GO:0048584,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050920,GO:0050921,GO:0050923,GO:0050924,GO:0051094,GO:0051098,GO:0051099,GO:0051716,GO:0065007,GO:0065009,GO:0071944,GO:0098552,GO:0098562,GO:0098796,GO:0098797,GO:1900120,GO:1900122,GO:1902494,GO:1903664,GO:1903665,GO:1903667,GO:1903669,GO:1905360
DescriptionG-protein beta/gamma-subunit complex binding
COG categoryV
BRITEko00000,ko00001,ko00002,ko04031,ko04147
Cross References
External references for this mRNA
DatabaseAccession
GO0051239
GO0071944
GO0031683
GO0004871
GO0009605
GO0003333
GO0001664
GO0005737
GO0019001
GO0003924
GO0060259
GO0042221
GO0007186
GO0043226
GO0050909
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft890_5aEsuBft890_5aEctocarpus subulatus male Bft15bgeneScaffold_178 125875..127620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft890_5a-0001EsuBft890_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_178 126016..127591 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft890_5a-0001-exonEsuBft890_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_178 125875..126159 -
EsuBft890_5a-0001-exonagat-exon-20254Ectocarpus subulatus male Bft15bexonScaffold_178 126307..126381 -
EsuBft890_5a-0001-exonagat-exon-20255Ectocarpus subulatus male Bft15bexonScaffold_178 126938..127024 -
EsuBft890_5a-0001-exonagat-exon-20256Ectocarpus subulatus male Bft15bexonScaffold_178 127475..127620 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft890_5a-0001-exonagat-three_prime_utr-22788Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_178 125875..126015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft890_5a-0001-cdsEsuBft890_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_178 126016..126159 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft890_5a-0001-exonagat-five_prime_utr-14762Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_178 127592..127620 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft890_5a-0001 ID=EsuBft890_5a-0001|Name=EsuBft890_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=593bp|location=Sequence derived from alignment at Scaffold_178:125875..127620- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTTGTTCGAGGACAACTCGGTCAACCGGATGCACGAATCGTTGGAGCTC
TTCACCGAAGTAGCGGGGAACCCCATATTCGAGAAGACGCCAATTTTCGT
CTTTTTGAACAAGAAGGATCTCTTCGAGGAAATGATCGTAACAAAGAGCC
TCAAGAAGTGCTTCCCGGAGTATGATGGTCCAGACGGAGAGGCCATGCCA
GCTTTGAGGTTCATTGAACAGAAGTATAAGCAGGCAATGCTGAGCAAGGT
CCCGGGGAAGGACGTCACTGTGCACGTTATCGCGGCAAGAGTTAGAATGG
ACATGAAGATCGCTTTTGGGGAGGTGAAGGACGAGATTCGGCGCTCCTTT
GACTCGAAGTCGGCTAGACGCAAGTCATTTTCGAAGCTGGGCTCGCCTAG
AGCAGCGATAGAACGGCTCCAGAAAATTGGTTCCCCGCTAAATTCAAGAT
AAGACAAGAGATAGGCATGGTGTGGAGGGAAATGTCGTCGATATAGTTCT
TGCGTTAGTCGTGCGGGCGAATGGGGGGACTCGCGTCTTCCTGATGTACG
GAACACGCCTAGATGTATGTAGTACTAAATAACCCTGCTGAAG
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protein sequence of EsuBft890_5a-0001

>EsuBft890_5 ID=EsuBft890_5|Name=EsuBft890_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=140bp
MHESLELFTEVAGNPIFEKTPIFVFLNKKDLFEEMIVTKSLKKCFPEYDG
PDGEAMPALRFIEQKYKQAMLSKVPGKDVTVHVIAARVRMDMKIAFGEVK
DEIRRSFDSKSARRKSFSKLGSPRAAIERLQKIGSPLNSR
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mRNA from alignment at Scaffold_178:125875..127620-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft890_5a-0001 ID=EsuBft890_5a-0001|Name=EsuBft890_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1746bp|location=Sequence derived from alignment at Scaffold_178:125875..127620- (Ectocarpus subulatus male Bft15b)
TGTTGTTCGAGGACAACTCGGTCAACCGGATGCACGAATCGTTGGAGCTC
TTCACCGAAGTAGCGGGGAACCCCATATTCGAGAAGACGCCAATTTTCGT
CTTTTTGAACAAGAAGGATCTCTTCGAGGAAATGATCGTAACAAAGGTAC
GCATAGGTACAGATTAGCCTTACGCGTGCACCATTCCGATAGAGACGCGG
TTATCGTTTCCGAGGCAGTCATCACCTCGTACCTAGTTCAATGGAGCTGG
CATTGATCGAGGACTGACAAAAAGTTGCAGGTGCTAGGTAGCCCATGAAC
GTTTCCAACATTTTTCGTTGTAAGAAATTGTGAGAATTTGTCTTCACAGC
TGAAGGGCAAATGGATCCACAACGATCGCCTTGAAACTGATCATGACATC
ATCTTAACGCGGCTGGAAGGAAATGCTTCAGGCGTTTCAGAGCGAGAGGG
AAAGAGAGAGCGACGAGAATGACAGAGAAAATCCAGGGAATGAGTGAATG
AGTGGATGAGTGAATGCAAGTGCGCAGTCTCTCAAGTTCATTAAACCAAA
ACGTTCATCCCCTCGCATTTTTGACGTTTGGTTCCGTGATTATCAGAGCC
TCAAGAAGTGCTTCCCGGAGTATGATGGTCCAGACGGAGAGGCCATGCCA
GCTTTGAGGTTCATTGAACAGAAGTATAAGCAGGTGGACGCGAATGTATG
ACGTGAGGTGTTCATCTTCCAGAACTTTGAAATGTACGGAGGAAACCCAC
GGGACTCTGGGAAAAGTATGATGTACTTCATTCTGAACGCCCCAGGCTGT
GGACTAGGACTAGTCTTAAAATATGGAGATGTAATGGAGCAAGAGTGCGT
CTGTTGTAGCACCCTCAGCATTTTGGTGTTACGAATAGTCAAATGAAGAT
GACACGTGAGCCTGAAATACAAGGAGAAAACCTTGACGCACGTAGTGCTA
GGTGCGCCTTCACACTGACTGTTGTTAGGCACCGTGAAGTGCACACAAAC
CGCATAGACTGAATATTCCAGATAGCATTTTATAAGCAATACACGCACTG
GATTGACAGGTTTATGAAGTAAAACACATGATTACTTCAGAAGGGAAAAT
TGTTTGCTTTTGATGATAGAGTGGACAACACACGGTGTGAACAAAGGCAA
TGATTCTACCCGAACAACAGCAACCGCGGCAACCGTCAGTAGCTTCCCCA
CCCCGACGTTCTGAAACATCGATCGATCCATTGATATAGGCAATGCTGAG
CAAGGTCCCGGGGAAGGACGTCACTGTGCACGTTATCGCGGCAAGAGTTA
GAATGGACATGAAGGTGGGCAAGGTGATAGATAACTATATCACGAGAGAC
GTAAGACAACAATGCGCCTCATGCGTCCAAACACGAAATTCATTAAAACA
TTAGGAACCCCAACAATAATTATGCACTCGTTACCGTGATGTTCTCGTTT
CTTTTCTTCAGATCGCTTTTGGGGAGGTGAAGGACGAGATTCGGCGCTCC
TTTGACTCGAAGTCGGCTAGACGCAAGTCATTTTCGAAGCTGGGCTCGCC
TAGAGCAGCGATAGAACGGCTCCAGAAAATTGGTTCCCCGCTAAATTCAA
GATAAGACAAGAGATAGGCATGGTGTGGAGGGAAATGTCGTCGATATAGT
TCTTGCGTTAGTCGTGCGGGCGAATGGGGGGACTCGCGTCTTCCTGATGT
ACGGAACACGCCTAGATGTATGTAGTACTAAATAACCCTGCTGAAG
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Coding sequence (CDS) from alignment at Scaffold_178:125875..127620-

>EsuBft890_5a-0001 ID=EsuBft890_5a-0001|Name=EsuBft890_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=423bp|location=Sequence derived from alignment at Scaffold_178:125875..127620- (Ectocarpus subulatus male Bft15b)
ATGCACGAATCGTTGGAGCTCTTCACCGAAGTAGCGGGGAACCCCATATT
CGAGAAGACGCCAATTTTCGTCTTTTTGAACAAGAAGGATCTCTTCGAGG
AAATGATCGTAACAAAGAGCCTCAAGAAGTGCTTCCCGGAGTATGATGGT
CCAGACGGAGAGGCCATGCCAGCTTTGAGGTTCATTGAACAGAAGTATAA
GCAGGCAATGCTGAGCAAGGTCCCGGGGAAGGACGTCACTGTGCACGTTA
TCGCGGCAAGAGTTAGAATGGACATGAAGATCGCTTTTGGGGAGGTGAAG
GACGAGATTCGGCGCTCCTTTGACTCGAAGTCGGCTAGACGCAAGTCATT
TTCGAAGCTGGGCTCGCCTAGAGCAGCGATAGAACGGCTCCAGAAAATTG
GTTCCCCGCTAAATTCAAGATAA
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