EsuBft890_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft890_3a-0001
Unique NameEsuBft890_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_178contigScaffold_178:91698..94686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LTN2
ProteomeIdEsuBft890_3
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsIPR001594
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length49
Hectar predicted targeting categorysignal anchor
Evalue3.1e-76
EggNOG OGsCOG5273@1|root,KOG1311@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Ec32 orthologEc-28_003460.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K16675,ko:K20030,ko:K20032
KEGG TC9.B.37.1,9.B.37.3
KEGG Pathwayko04391,map04391
EC2.3.1.225
Descriptionprotein-cysteine S-palmitoyltransferase activity
COG categoryZ
BRITEko00000,ko00001,ko01000,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0008270
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft890_3aEsuBft890_3aEctocarpus subulatus male Bft15bgeneScaffold_178 91698..94686 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft890_3a-0001-exonEsuBft890_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_178 91698..91713 +
EsuBft890_3a-0001-exonagat-exon-20226Ectocarpus subulatus male Bft15bexonScaffold_178 91782..91925 +
EsuBft890_3a-0001-exonagat-exon-20228Ectocarpus subulatus male Bft15bexonScaffold_178 93586..93709 +
EsuBft890_3a-0001-exonagat-exon-20227Ectocarpus subulatus male Bft15bexonScaffold_178 94473..94686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft890_3a-0001-cdsEsuBft890_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_178 91698..91713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft890_3a-0001EsuBft890_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_178 91698..94686 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft890_3a-0001 ID=EsuBft890_3a-0001|Name=EsuBft890_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=498bp|location=Sequence derived from alignment at Scaffold_178:91698..94686+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTTGGAGGAAGACATCGACGCACCCACTCTTCCCCTTGATTTTTT
CAGCCTTCCCGCCACGACGTACGGGGTACAGGCCTTCTTCTCCACGGTTT
CGGTTTGCCTGTTCGTGGGGTGCATCGTCTCACTCGCTTCTACGGCGATG
ATGGACCCTGGGATCATTCCTCGACGAACGCTGGCGTTGTGGAACTCATT
GGACCCGGCCTCTCCTGGCATTGCCGAGCGAAAGTTCTGTGGCTCGTGTC
AGCTCGCGCGTCCCCCGAGGGCCAAGTACTGCAAGGGCAGCCAATTCGTC
CCCCACCTGTTGGCTCTATGGACAGCTGTGGTTATGATCCTCGTGGGGGG
GTTGCTATGTTTCCACGTCTTCCTTGTGACGAAGAGCCAAACAACCAACT
TGTATCTCAGACGCGAGGCGCCAAGCGGCAGTCGCTTGGGTCGACCCTTC
TTGGCTAGCTGCCACGAATTATGGAGCGGGGCACGGCCACTGAGGTGA
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protein sequence of EsuBft890_3a-0001

>EsuBft890_3 ID=EsuBft890_3|Name=EsuBft890_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=165bp
MFLEEDIDAPTLPLDFFSLPATTYGVQAFFSTVSVCLFVGCIVSLASTAM
MDPGIIPRRTLALWNSLDPASPGIAERKFCGSCQLARPPRAKYCKGSQFV
PHLLALWTAVVMILVGGLLCFHVFLVTKSQTTNLYLRREAPSGSRLGRPF
LASCHELWSGARPLR
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mRNA from alignment at Scaffold_178:91698..94686+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft890_3a-0001 ID=EsuBft890_3a-0001|Name=EsuBft890_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2989bp|location=Sequence derived from alignment at Scaffold_178:91698..94686+ (Ectocarpus subulatus male Bft15b)
ATGTTCTTGGAGGAAGGTCCAGATGCTCGCCCACTGACCCGTTGGAACGA
TGAGAGCTAAAAAGGCGCCGAAGATGAACGATAGACATCGACGCACCCAC
TCTTCCCCTTGATTTTTTCAGCCTTCCCGCCACGACGTACGGGGTACAGG
CCTTCTTCTCCACGGTTTCGGTTTGCCTGTTCGTGGGGTGCATCGTCTCA
CTCGCTTCTACGGCGATGATGGACCCTGGTGAGCAAACAAATGGTTTAAT
TGTGAGTGATACGCCGAGGCGATCGAGAAAGGATCGCAACTTCCGAACGC
CGTCGAACGACGATTCTGTTTTTCCTCGTTGGTGTCGGCAAAGAGCTATG
TGATGCTGGTGGCAGAAGATGCGAATCGAATCCCGTCACGCCAACAGATG
GTGGCAACCACCAAGAACGCGAAGAAATTCGTTTTTCTTGGCAATTCTGA
TGACGTGGCGGACATGGGGCACTCGTTAACAATATGTTGTAGAAGACTGA
AACGAGGAAGCTTGATTCACCGCCTGCCGTCGTCCGGGTTCCGGTTCCCC
CTTGAAAGGCTCTTTTATTTTTGGTCACATCTCGTTGATGTCTACCGAGG
ACGACGCCTTCTTGTTGGATCTCACATTGAGCAGTGGCCAAAATCGGGTA
CACCCGGTGCAAACACGGCCATAATCGGGTACCCTCTACAAGACGCTGCT
GCGAGCGACCGCATGCCACCATCTAAATTGGCCGACGCCCGCCCCTACCC
AACCTTGACCGTCTTTCCACCGGGTGCACCCGATCTTGGCTACTCACCCC
CTGGAGGAGTACTCGGTTTTTCTTTCTGTCCCCTACCCGAAAATGGCTGG
GCTGTTTGACCAAAACCCATGCACACATGCACATGTCAGCAATGTCCTGC
CCTCGAATTCGGACGTTTTGACGGCCCGGCGGGGGGAGGAAGACCACCCG
CCGGCGGTGGAAGTCTGCCTTGGGGGGAACGGCAGGCGGTCTGTGCAAAT
GATCGAGAAGAAGAGCTTGATGCCTCCCTCACGAGATACGTCACACACGG
GGCTCATCTGAAAAATAGACATATTCTTTCCCTCCCGCTACCTTCTCATG
GCGACAAACGAGGGCCAGCGGTGTGCGTCCGACCCGTGATTGTGTGCATG
GGGTTTGGTCGAACAGCCCAGCCATTTTCGGGTAGGGGAAAGAAAAACCG
GGGACCCCTCCGGGGGGTGAGTAGTCAAGATCGGGTGCACCCGGTGGAAA
GACGGTCAAGGTCGCGTAGGAGTGGGCGTCGGCCAATCAGATGGTGTCAT
GCGGTCGATTCCAGTAGCGTCTTGTAGAGGGTACCCGATTATGGCCGTGT
TTGCACCGGGTGTACCCGGTTTCGGCCACTGCTCTCTCACATCCCTTTGC
TCTGTGACGTCATTTCGACCCAACCTTTTCTCGTTTTCGTCGAGGAACCT
GCGTGAGTTTTGCAGCATCTTGCAATATTTCGGTTTGGCTTATTGCTCTT
CGCTGTTCAATTACGTAGTTCGGCTGAGATACTACCCTCCTCACTTTTTG
GATCTCAGAAGATTATAGAGCTCTAATCGTGACACGAGTCTTGTCGGTGT
GTGTTTCAATTTTCCGACTTCGCCTTGAACGACCTGGGTGATTTATGACC
ATCTTATTTATTGAACGCCGCTCTAGGTCTCTACCTGCCCTGCAACCTCT
TCCCTAACTCAAGGTCGGGTCAGACAGAAAAGGGTCCCGGACCCCATCCT
TGAAATACCCTCACGAACAAAAGCTTGTGGTACCTGGGGTATATCTATTC
CCCCTCCCAGGAGGTCGCGATATGCAAGTGTTTGTATAGCATCACAAATA
TCCCTTACTCCCCACCGCGGCTTAGTTTTCTTTGGCAGGGATCATTCCTC
GACGAACGCTGGCGTTGTGGAACTCATTGGACCCGGCCTCTCCTGGCATT
GCCGAGCGAAAGTTCTGTGGCTCGTGTCAGCTCGCGCGTCCCCCGAGGGC
CAAGTACTGCAAGTGATGCAATAACTGCGTCATGGAATTCGATCACCACT
GCCCATAGTAAGTCATTTCGCAGGGTAGTGTGCATATTTACGTCGCAGGA
AACACAGCGGTATTATGATGAATTGAGTTTATATTACCATTATTTGAGAA
GCTGATGCTTAGAATGTGCAACACCCCAACCCCCTTTTCAAGTACTCGTG
GATGGTTTTGTGGCAGCCGCACGTGCTCGGTCGCACGACTACATTTTTGG
AGTGGTTACATCGCCGATCTCGATCACTGCAGGAGTGAACGCGCTGCCCT
ACATGACTTTTGTCCTGTTGCTACTCGTTCCTTCTAGCACGGGCAACTGC
ATCGGCGCACGCAACTATCGCGCGTTCATGGTCTTCATTTCTATGGTTGC
CATCAGCGCGTTCTTCGCCGCGCGTCAAGCATGCTGCACATCGTCGCCCC
CCCAGCTGACAACGTCGGTCCGGTCCTTCTCGTGAACTGGGCCAGAATAA
CGTGAGAATGATTGTTGTCGTACTTGCTTGCAAATCGCTCGTAGTTGTTT
AGCTCCAATTGCACTATGTTTGTTTAGCGTCTCTCAAGTGGTCAATACAA
TCCGCGGCGGTGGAACCAAAACGAGCCGGTAACAAGGGCGGCAAGATTAA
CGTGTCGTGGAGCTGAAGGAATCTTCGTGGTATGGTGGTAGGTATTTCGC
GTGTTTGCGTCCGCATTTCATGATACATAACCCCCACCCTACCTCCTGCT
TGCCTTGCTTCCCGCTTGTTCGCAGGGGCAGCCAATTCGTCCCCCACCTG
TTGGCTCTATGGACAGCTGTGGTTATGATCCTCGTGGGGGGGTTGCTATG
TTTCCACGTCTTCCTTGTGACGAAGAGCCAAACAACCAACTTGTATCTCA
GACGCGAGGCGCCAAGCGGCAGTCGCTTGGGTCGACCCTTCTTGGCTAGC
TGCCACGAATTATGGAGCGGGGCACGGCCACTGAGGTGA
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Coding sequence (CDS) from alignment at Scaffold_178:91698..94686+

>EsuBft890_3a-0001 ID=EsuBft890_3a-0001|Name=EsuBft890_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=498bp|location=Sequence derived from alignment at Scaffold_178:91698..94686+ (Ectocarpus subulatus male Bft15b)
ATGTTCTTGGAGGAAGACATCGACGCACCCACTCTTCCCCTTGATTTTTT
CAGCCTTCCCGCCACGACGTACGGGGTACAGGCCTTCTTCTCCACGGTTT
CGGTTTGCCTGTTCGTGGGGTGCATCGTCTCACTCGCTTCTACGGCGATG
ATGGACCCTGGGATCATTCCTCGACGAACGCTGGCGTTGTGGAACTCATT
GGACCCGGCCTCTCCTGGCATTGCCGAGCGAAAGTTCTGTGGCTCGTGTC
AGCTCGCGCGTCCCCCGAGGGCCAAGTACTGCAAGGGCAGCCAATTCGTC
CCCCACCTGTTGGCTCTATGGACAGCTGTGGTTATGATCCTCGTGGGGGG
GTTGCTATGTTTCCACGTCTTCCTTGTGACGAAGAGCCAAACAACCAACT
TGTATCTCAGACGCGAGGCGCCAAGCGGCAGTCGCTTGGGTCGACCCTTC
TTGGCTAGCTGCCACGAATTATGGAGCGGGGCACGGCCACTGAGGTGA
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