EsuBft890_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft890_2a-0001
Unique NameEsuBft890_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_178contigScaffold_178:85162..86319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft890_2
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length61
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_003450.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft890_2aEsuBft890_2aEctocarpus subulatus male Bft15bgeneScaffold_178 85162..86319 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft890_2a-0001-exonagat-exon-20224Ectocarpus subulatus male Bft15bexonScaffold_178 85162..85165 -
EsuBft890_2a-0001-exonagat-exon-20225Ectocarpus subulatus male Bft15bexonScaffold_178 85404..85895 -
EsuBft890_2a-0001-exonEsuBft890_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_178 86204..86319 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft890_2a-0001-cdsEsuBft890_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_178 85162..85165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft890_2a-0001EsuBft890_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_178 85162..86319 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft890_2a-0001 ID=EsuBft890_2a-0001|Name=EsuBft890_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=612bp|location=Sequence derived from alignment at Scaffold_178:85162..86319- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACTGCTTCAGAGGATACGCGCGGATGAGCAGATCATGGCTGAAGA
GGTGGTGCGACTGCGACGTGAGGCTGACCCCAGGGTCATGATTCGCCGTT
TCTGGCGTTCCTCCGGGCTTCCTTTGGATCACATATTTGCAACCGCTGCG
GGCGTGTACCGTCGATCGCGCCTCCGAACTGCGCTCTCAACCTGGCATTC
CGTGGCCAAGGCAGAAACCCACCACATCAACTACAGAATCGAGGCAGCAG
AAGTCATTCAACGCGCTACACGAGTTTTTATCGCAAGACATACAGCTGAG
CGTCGCCGCCGCGTGCGTGGTCCGGCGGTGTTGGCAGCCTCCCGCATGAT
TCAGGCCGAATTTCGTTCGCGGAAAGCCCGAGTAAAGACTGCTGACGTAG
CAGTTCGACAGCAAAACCGACAAGAGCTTCGAAAACGATACTGGTGCGAC
GAGACTGCGAAAGACGAACAAAGGAGACGAGATGCGTCGACCGTGATACA
AGCGGCGTGGAGGGGGGCTGCTGGGCGCGCAGCAGGATTGAATAGGGCAC
GACGAACGCTGAGGGGGGTGTTGAATGAGCTGGGTGGTGGCCGGGGGCGC
ATGCACAGGTAG
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protein sequence of EsuBft890_2a-0001

>EsuBft890_2 ID=EsuBft890_2|Name=EsuBft890_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=203bp
MLLLQRIRADEQIMAEEVVRLRREADPRVMIRRFWRSSGLPLDHIFATAA
GVYRRSRLRTALSTWHSVAKAETHHINYRIEAAEVIQRATRVFIARHTAE
RRRRVRGPAVLAASRMIQAEFRSRKARVKTADVAVRQQNRQELRKRYWCD
ETAKDEQRRRDASTVIQAAWRGAAGRAAGLNRARRTLRGVLNELGGGRGR
MHR
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mRNA from alignment at Scaffold_178:85162..86319-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft890_2a-0001 ID=EsuBft890_2a-0001|Name=EsuBft890_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1158bp|location=Sequence derived from alignment at Scaffold_178:85162..86319- (Ectocarpus subulatus male Bft15b)
ATGTTACTGCTTCAGAGGATACGCGCGGATGAGCAGATCATGGCTGAAGA
GGTGGTGCGACTGCGACGTGAGGCTGACCCCAGGGTCATGATTCGCCGTT
TCTGGCGTTCCTCCGGGTAAGGCTTGAGGTGAATATTTTTGCTATGGTTC
GGTCGCGGTAGCAGGAGAGGCTTTCGGCGGAATGATATGAACACCATGAA
AATTACGGTCTTGGGGCCGATACGGTATGGTGCTATTCTGGAATGCTGGC
ACGCTCCAGGATTGGAGCTACTGTAACCCGGATTTCCATGTCGTGTGAAT
GGTGCACCCCATCAGGAATACAGACGTCCCGTGCGCTAGTGGGACGTTAT
CGCGTCTCCATCGCCTAGATAATCGTGAAGCGCTCACACAAATGTCGTTT
GGAATGTTCTCACCGAACCTCCAGGCTTCCTTTGGATCACATATTTGCAA
CCGCTGCGGGCGTGTACCGTCGATCGCGCCTCCGAACTGCGCTCTCAACC
TGGCATTCCGTGGCCAAGGCAGAAACCCACCACATCAACTACAGAATCGA
GGCAGCAGAAGTCATTCAACGCGCTACACGAGTTTTTATCGCAAGACATA
CAGCTGAGCGTCGCCGCCGCGTGCGTGGTCCGGCGGTGTTGGCAGCCTCC
CGCATGATTCAGGCCGAATTTCGTTCGCGGAAAGCCCGAGTAAAGACTGC
TGACGTAGCAGTTCGACAGCAAAACCGACAAGAGCTTCGAAAACGATACT
GGTGCGACGAGACTGCGAAAGACGAACAAAGGAGACGAGATGCGTCGACC
GTGATACAAGCGGCGTGGAGGGGGGCTGCTGGGCGCGCAGCAGGATTGAA
TAGGGCACGACGAACGCTGAGGGGGGTGTTGAATGAGCTGGGTGGTGGCC
GGGGGCGCATGCACAGGTGGGTGATGGTTTTTCGAGAGGAAAGTGGGCAC
CTCTTCGTAAGACGTCGGGACACCTCGTGACTTGGCCTTTTTCACTTGCC
GCGTTCATTGAAGGCTGCTTCTTCACCGTTTCTGAGGGTTTCCGGTGCAA
TAGCAAGCTTGGACAACTGGGAAATGCTTATATTTTCATGGCGGCAACCT
GTCACACAATTTATGAGCGTTCGAAGGGCGTGCATGGTGCTTCAAACGTC
TCAGGTAG
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Coding sequence (CDS) from alignment at Scaffold_178:85162..86319-

>EsuBft890_2a-0001 ID=EsuBft890_2a-0001|Name=EsuBft890_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=612bp|location=Sequence derived from alignment at Scaffold_178:85162..86319- (Ectocarpus subulatus male Bft15b)
ATGTTACTGCTTCAGAGGATACGCGCGGATGAGCAGATCATGGCTGAAGA
GGTGGTGCGACTGCGACGTGAGGCTGACCCCAGGGTCATGATTCGCCGTT
TCTGGCGTTCCTCCGGGCTTCCTTTGGATCACATATTTGCAACCGCTGCG
GGCGTGTACCGTCGATCGCGCCTCCGAACTGCGCTCTCAACCTGGCATTC
CGTGGCCAAGGCAGAAACCCACCACATCAACTACAGAATCGAGGCAGCAG
AAGTCATTCAACGCGCTACACGAGTTTTTATCGCAAGACATACAGCTGAG
CGTCGCCGCCGCGTGCGTGGTCCGGCGGTGTTGGCAGCCTCCCGCATGAT
TCAGGCCGAATTTCGTTCGCGGAAAGCCCGAGTAAAGACTGCTGACGTAG
CAGTTCGACAGCAAAACCGACAAGAGCTTCGAAAACGATACTGGTGCGAC
GAGACTGCGAAAGACGAACAAAGGAGACGAGATGCGTCGACCGTGATACA
AGCGGCGTGGAGGGGGGCTGCTGGGCGCGCAGCAGGATTGAATAGGGCAC
GACGAACGCTGAGGGGGGTGTTGAATGAGCTGGGTGGTGGCCGGGGGCGC
ATGCACAGGTAG
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