EsuBft88_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft88_9a-0001
Unique Name	EsuBft88_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_232	contig	Scaffold_232:990221..992349 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	112098.XP_008610723.1
ProteomeId	EsuBft88_9
Protein domains	TMhelix
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	TRANSMEMBRANE
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	IPR019352
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	212
Hectar predicted targeting category	signal anchor
Evalue	3.87e-06
EggNOG OGs	KOG3136@1\|root,KOG3136@2759\|Eukaryota
Ec32 ortholog description	Uncharacterised protein family UPF0454
Ec32 ortholog	Ec-07_003140.1
Date last modified	2016-06-13
Date creation	2016-06-13
Preferred name	C12orf49
Description	Uncharacterized conserved protein (DUF2054)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft88_9a	EsuBft88_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_232 990221..992349 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft88_9a-0001-exon	EsuBft88_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_232 990221..992349 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft88_9a-0001-cds	EsuBft88_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_232 990221..991870 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft88_9a-0001-exon	agat-three_prime_utr-22786	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_232 991871..992349 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft88_9a-0001	EsuBft88_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_232 990221..991870 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_232:990221..992349+
coding sequence from alignment at Scaffold_232:990221..992349+

spliced messenger RNA

>EsuBft88_9a-0001 ID=EsuBft88_9a-0001|Name=EsuBft88_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2129bp|location=Sequence derived from alignment at Scaffold_232:990221..992349+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCTACCCCTCGTTTCCGGCTGTTCGACAACCGCCGGGGGAGCAG
CAACCAGATGGACGAAGAAGCAGGTCAGGCGACGGCGACCTTGCCCCGCC
GGCGCATGCTTACCTCCTCCGTTGCCGTCGCGAGACAGCGAAGGCGTAAC
CGGAGGAGGCCCGGCGACCGCCGAGGCCTAGCGGCTCTCGTCCCGCGACT
GCTGGCTTCTTCCGTCTCTAGAGCAAGCCGGCGCCGAGCGCTGCTGCTCC
TGCTGGTGCTCGCGGCGTGCGGCGCCGGGGTACTCGCGAGCGCTAGGCTG
CTGGCCCGGGCGTCGTTGTCGTATTCGTCCTGGCCGTCCTCGTCGTCCCT
GCCAGGATACTTGCATTCTTCTGGCGCAGGCTCCACTGATAGAGACGACA
ACGATGATGATGATGATGATGATGATGATGATGATGCCGATCGCCATAAG
CACCGACGCCCCGCCGTGAGTCTCGGCCCAGACGCGATCCCTTCCGTGTT
GCTGGTCGAGCGAGGGCCGTCAGGCTTGCCGTCTGGCCCGGCGCTGCCCG
GCGGCGCGCGGAAAGCGAGCAGCCTTGTTGATGTGACGGGAGCCGTGCTA
GGTGATGGCGGCGGCGGGGGCGAGATACGGGGAGGGGAGGGGCGAGAGAA
CAGTAGTAATCCCTACCGGTGTCGCAACACCGTTCAAGGGGCTACGCTCG
TGGCGGACTCAGAAGGGAGGGTGTGTCACCGTGCGGAGCTAATAGTAGAG
GAAGGCGACGATGATGATGTCCGCCACCGCCCGGGGTGTTGCGCCCCGCG
CCCACCAGCGCTACCGCTGCTGCCGCCGCGCGACGGTGGCGGCGGCGGCG
GCGGCGATCTCGCCGTCAGTTCTCCTCCTGCGACTGACGACAAGCACAAG
CATCCTCCCGCGGCACCACATTCCGGCCCGGCGACGACAAGAACAGAGAC
CCGCCGCGGGGTAGAGGGAGGCGTGAGCGTGGAGCTGGTGGAGCTGGGGG
AGCTGGCGCACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGGGGGGC
TTTCCACCGGAAGAGGCCCTGTCGACGCCATTCTCGTGCTGGAGCTGCGA
CGTGGGAGAAGACGGCCCCTCCGGGAACAACGGCGGTGGAAACGACAGCT
CTTTTTTCTCGTCATGTTGCAGCTCGTATGAGTTTTGCGTGTCTTGCTGC
CAGAACCCCCAGCGGGGGAAGGAGCGGGAGGCCATTCAGGCGTCAGCCGC
GCTCTCGGGACACCCGGCCTATCGCGACCTCCTAGGGCCCGGTAATAACG
ACGCGTCGAACAGGAGAGAACTGCCACCCCCGCGTCAGCTCCAGGCTTCG
CATGCGGCAGCGGAAGCAGGAGTTGAAAAAAGCCAAGAGGAAGCAGAAGA
ACGCGACGCGCGAGAAATGGCCTTCGCCCACTGCGCCTTCCGATGTCGGA
CCTACTCCGGAAGCGTCGTACACGAGAACTCTTACCGCAGCCCGCTCAAG
CACTGCTTCGGGAGGTTCCGCCCTCCAGCTGCATCAGCAGCAGCGGCTGC
GTTGCCTGGGGGACGGGCTGGGGTGGTAGAGGGCCGGGAGAGCCGAGGGG
CGCCGCCACACCAGGTGGACCCTCTTCTTTTTGACTTGGCGGAGCCATGA
GCTTGGAAGCCGGAGGGTGGATGGCCCGGGTCTTCACATCTGTCTGTACA
TAGCCAATTGTGTTGTTTTGTTGGTGGATAGACGAGTGTTCCCGCCGGGA
CTCGACAGATGCGTTTTGTTGCGGGCAAAGGTTGCCAGTCGTACACCATA
CAATAGAGCTTGAAGATATGTTGTACATCTTCTATGCATAACACTGGCTG
TTCTTTTCTTCTTGCGTGTGTGAAGGAACTTAAACATGTAGATCTTGATG
CCGTTTCTCGCTCTTGGGCGGATCGGTTGGGATAGCTTCAGATATCGATG
TAGCTCAGTTCACGTTTTCTTTGGGGGCCTTTTCGTGGCTCCTTTACCTT
CGTGTCCTCTTTTGTGTATTGTGCCTGGCTGGCAATAGGAGATGTGTGCG
TGGATGGATGCATACGTGCGAAAATCAGAGGCAAGCGTACCGTAGGTGCG
CTTCGAACGGGGGCAATAAAAATGAGAGG

protein sequence of EsuBft88_9a-0001

>EsuBft88_9 ID=EsuBft88_9|Name=EsuBft88_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=549bp
MDATPRFRLFDNRRGSSNQMDEEAGQATATLPRRRMLTSSVAVARQRRRN
RRRPGDRRGLAALVPRLLASSVSRASRRRALLLLLVLAACGAGVLASARL
LARASLSYSSWPSSSSLPGYLHSSGAGSTDRDDNDDDDDDDDDDDADRHK
HRRPAVSLGPDAIPSVLLVERGPSGLPSGPALPGGARKASSLVDVTGAVL
GDGGGGGEIRGGEGRENSSNPYRCRNTVQGATLVADSEGRVCHRAELIVE
EGDDDDVRHRPGCCAPRPPALPLLPPRDGGGGGGGDLAVSSPPATDDKHK
HPPAAPHSGPATTRTETRRGVEGGVSVELVELGELAHGGGGGGGGGGAGG
FPPEEALSTPFSCWSCDVGEDGPSGNNGGGNDSSFFSSCCSSYEFCVSCC
QNPQRGKEREAIQASAALSGHPAYRDLLGPGNNDASNRRELPPPRQLQAS
HAAAEAGVEKSQEEAEERDAREMAFAHCAFRCRTYSGSVVHENSYRSPLK
HCFGRFRPPAASAAAAALPGGRAGVVEGRESRGAPPHQVDPLLFDLAEP

mRNA from alignment at Scaffold_232:990221..992349+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft88_9a-0001 ID=EsuBft88_9a-0001|Name=EsuBft88_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2129bp|location=Sequence derived from alignment at Scaffold_232:990221..992349+ (Ectocarpus subulatus male Bft15b)
ATGGACGCTACCCCTCGTTTCCGGCTGTTCGACAACCGCCGGGGGAGCAG
CAACCAGATGGACGAAGAAGCAGGTCAGGCGACGGCGACCTTGCCCCGCC
GGCGCATGCTTACCTCCTCCGTTGCCGTCGCGAGACAGCGAAGGCGTAAC
CGGAGGAGGCCCGGCGACCGCCGAGGCCTAGCGGCTCTCGTCCCGCGACT
GCTGGCTTCTTCCGTCTCTAGAGCAAGCCGGCGCCGAGCGCTGCTGCTCC
TGCTGGTGCTCGCGGCGTGCGGCGCCGGGGTACTCGCGAGCGCTAGGCTG
CTGGCCCGGGCGTCGTTGTCGTATTCGTCCTGGCCGTCCTCGTCGTCCCT
GCCAGGATACTTGCATTCTTCTGGCGCAGGCTCCACTGATAGAGACGACA
ACGATGATGATGATGATGATGATGATGATGATGATGCCGATCGCCATAAG
CACCGACGCCCCGCCGTGAGTCTCGGCCCAGACGCGATCCCTTCCGTGTT
GCTGGTCGAGCGAGGGCCGTCAGGCTTGCCGTCTGGCCCGGCGCTGCCCG
GCGGCGCGCGGAAAGCGAGCAGCCTTGTTGATGTGACGGGAGCCGTGCTA
GGTGATGGCGGCGGCGGGGGCGAGATACGGGGAGGGGAGGGGCGAGAGAA
CAGTAGTAATCCCTACCGGTGTCGCAACACCGTTCAAGGGGCTACGCTCG
TGGCGGACTCAGAAGGGAGGGTGTGTCACCGTGCGGAGCTAATAGTAGAG
GAAGGCGACGATGATGATGTCCGCCACCGCCCGGGGTGTTGCGCCCCGCG
CCCACCAGCGCTACCGCTGCTGCCGCCGCGCGACGGTGGCGGCGGCGGCG
GCGGCGATCTCGCCGTCAGTTCTCCTCCTGCGACTGACGACAAGCACAAG
CATCCTCCCGCGGCACCACATTCCGGCCCGGCGACGACAAGAACAGAGAC
CCGCCGCGGGGTAGAGGGAGGCGTGAGCGTGGAGCTGGTGGAGCTGGGGG
AGCTGGCGCACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGGGGGGC
TTTCCACCGGAAGAGGCCCTGTCGACGCCATTCTCGTGCTGGAGCTGCGA
CGTGGGAGAAGACGGCCCCTCCGGGAACAACGGCGGTGGAAACGACAGCT
CTTTTTTCTCGTCATGTTGCAGCTCGTATGAGTTTTGCGTGTCTTGCTGC
CAGAACCCCCAGCGGGGGAAGGAGCGGGAGGCCATTCAGGCGTCAGCCGC
GCTCTCGGGACACCCGGCCTATCGCGACCTCCTAGGGCCCGGTAATAACG
ACGCGTCGAACAGGAGAGAACTGCCACCCCCGCGTCAGCTCCAGGCTTCG
CATGCGGCAGCGGAAGCAGGAGTTGAAAAAAGCCAAGAGGAAGCAGAAGA
ACGCGACGCGCGAGAAATGGCCTTCGCCCACTGCGCCTTCCGATGTCGGA
CCTACTCCGGAAGCGTCGTACACGAGAACTCTTACCGCAGCCCGCTCAAG
CACTGCTTCGGGAGGTTCCGCCCTCCAGCTGCATCAGCAGCAGCGGCTGC
GTTGCCTGGGGGACGGGCTGGGGTGGTAGAGGGCCGGGAGAGCCGAGGGG
CGCCGCCACACCAGGTGGACCCTCTTCTTTTTGACTTGGCGGAGCCATGA
GCTTGGAAGCCGGAGGGTGGATGGCCCGGGTCTTCACATCTGTCTGTACA
TAGCCAATTGTGTTGTTTTGTTGGTGGATAGACGAGTGTTCCCGCCGGGA
CTCGACAGATGCGTTTTGTTGCGGGCAAAGGTTGCCAGTCGTACACCATA
CAATAGAGCTTGAAGATATGTTGTACATCTTCTATGCATAACACTGGCTG
TTCTTTTCTTCTTGCGTGTGTGAAGGAACTTAAACATGTAGATCTTGATG
CCGTTTCTCGCTCTTGGGCGGATCGGTTGGGATAGCTTCAGATATCGATG
TAGCTCAGTTCACGTTTTCTTTGGGGGCCTTTTCGTGGCTCCTTTACCTT
CGTGTCCTCTTTTGTGTATTGTGCCTGGCTGGCAATAGGAGATGTGTGCG
TGGATGGATGCATACGTGCGAAAATCAGAGGCAAGCGTACCGTAGGTGCG
CTTCGAACGGGGGCAATAAAAATGAGAGG

Coding sequence (CDS) from alignment at Scaffold_232:990221..992349+

>EsuBft88_9a-0001 ID=EsuBft88_9a-0001|Name=EsuBft88_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1650bp|location=Sequence derived from alignment at Scaffold_232:990221..992349+ (Ectocarpus subulatus male Bft15b)
ATGGACGCTACCCCTCGTTTCCGGCTGTTCGACAACCGCCGGGGGAGCAG
CAACCAGATGGACGAAGAAGCAGGTCAGGCGACGGCGACCTTGCCCCGCC
GGCGCATGCTTACCTCCTCCGTTGCCGTCGCGAGACAGCGAAGGCGTAAC
CGGAGGAGGCCCGGCGACCGCCGAGGCCTAGCGGCTCTCGTCCCGCGACT
GCTGGCTTCTTCCGTCTCTAGAGCAAGCCGGCGCCGAGCGCTGCTGCTCC
TGCTGGTGCTCGCGGCGTGCGGCGCCGGGGTACTCGCGAGCGCTAGGCTG
CTGGCCCGGGCGTCGTTGTCGTATTCGTCCTGGCCGTCCTCGTCGTCCCT
GCCAGGATACTTGCATTCTTCTGGCGCAGGCTCCACTGATAGAGACGACA
ACGATGATGATGATGATGATGATGATGATGATGATGCCGATCGCCATAAG
CACCGACGCCCCGCCGTGAGTCTCGGCCCAGACGCGATCCCTTCCGTGTT
GCTGGTCGAGCGAGGGCCGTCAGGCTTGCCGTCTGGCCCGGCGCTGCCCG
GCGGCGCGCGGAAAGCGAGCAGCCTTGTTGATGTGACGGGAGCCGTGCTA
GGTGATGGCGGCGGCGGGGGCGAGATACGGGGAGGGGAGGGGCGAGAGAA
CAGTAGTAATCCCTACCGGTGTCGCAACACCGTTCAAGGGGCTACGCTCG
TGGCGGACTCAGAAGGGAGGGTGTGTCACCGTGCGGAGCTAATAGTAGAG
GAAGGCGACGATGATGATGTCCGCCACCGCCCGGGGTGTTGCGCCCCGCG
CCCACCAGCGCTACCGCTGCTGCCGCCGCGCGACGGTGGCGGCGGCGGCG
GCGGCGATCTCGCCGTCAGTTCTCCTCCTGCGACTGACGACAAGCACAAG
CATCCTCCCGCGGCACCACATTCCGGCCCGGCGACGACAAGAACAGAGAC
CCGCCGCGGGGTAGAGGGAGGCGTGAGCGTGGAGCTGGTGGAGCTGGGGG
AGCTGGCGCACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGGGGGGC
TTTCCACCGGAAGAGGCCCTGTCGACGCCATTCTCGTGCTGGAGCTGCGA
CGTGGGAGAAGACGGCCCCTCCGGGAACAACGGCGGTGGAAACGACAGCT
CTTTTTTCTCGTCATGTTGCAGCTCGTATGAGTTTTGCGTGTCTTGCTGC
CAGAACCCCCAGCGGGGGAAGGAGCGGGAGGCCATTCAGGCGTCAGCCGC
GCTCTCGGGACACCCGGCCTATCGCGACCTCCTAGGGCCCGGTAATAACG
ACGCGTCGAACAGGAGAGAACTGCCACCCCCGCGTCAGCTCCAGGCTTCG
CATGCGGCAGCGGAAGCAGGAGTTGAAAAAAGCCAAGAGGAAGCAGAAGA
ACGCGACGCGCGAGAAATGGCCTTCGCCCACTGCGCCTTCCGATGTCGGA
CCTACTCCGGAAGCGTCGTACACGAGAACTCTTACCGCAGCCCGCTCAAG
CACTGCTTCGGGAGGTTCCGCCCTCCAGCTGCATCAGCAGCAGCGGCTGC
GTTGCCTGGGGGACGGGCTGGGGTGGTAGAGGGCCGGGAGAGCCGAGGGG
CGCCGCCACACCAGGTGGACCCTCTTCTTTTTGACTTGGCGGAGCCATGA