EsuBft88_53a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft88_53a-0001
Unique NameEsuBft88_53a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_232contigScaffold_232:591719..593186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog42254.XP_004606309.1
ProteomeIdEsuBft88_53
Protein domainsIPR009057
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl33208|Metazoa
Length103
Evalue0.00017
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,38EWM@33154|Opisthokonta,3BGSJ@33208|Metazoa,3D2I5@33213|Bilateria,485CP@7711|Chordata,48YGM@7742|Vertebrata,3J38R@40674|Mammalia
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameTIGD4
DescriptionDNA binding
COG categoryBD
Cross References
External references for this mRNA
DatabaseAccession
GO0003677
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft88_53aEsuBft88_53aEctocarpus subulatus male Bft15bgeneScaffold_232 591719..593186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_53a-0001EsuBft88_53Ectocarpus subulatus male Bft15bpolypeptideScaffold_232 592016..593133 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_53a-0001-exonEsuBft88_53a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_232 591719..592018 -
EsuBft88_53a-0001-exonagat-exon-23383Ectocarpus subulatus male Bft15bexonScaffold_232 592232..592300 -
EsuBft88_53a-0001-exonagat-exon-23382Ectocarpus subulatus male Bft15bexonScaffold_232 592525..593186 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_53a-0001-exonagat-three_prime_utr-22776Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_232 591719..592015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_53a-0001-cdsEsuBft88_53a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_232 592016..592018 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_53a-0001-exonagat-five_prime_utr-14755Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_232 593134..593186 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft88_53a-0001 ID=EsuBft88_53a-0001|Name=EsuBft88_53a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1031bp|location=Sequence derived from alignment at Scaffold_232:591719..593186- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTACAATGTTTCTCATCTAATTGTCACGCATTCAATACTTCCACTTTACT
CTGATGACCGCAGCACTACACAACCGTCTAGAGAGGTCTAGAGAGGAGGA
GCCATCGCTTGGAGGAAAGGGGAAGCGACGTGCGGCGGTTGATGCTGGGT
TGGGTGGTAGCGCGGGGAAACGGGCTACACCTGGTCCTGGCAGCAGCGCG
GGCGGCAATACGGGCAGCACCCCCGGCGGCAGCGCGGGCGGCAGCAAGGG
CGGCGGCAAGGGCGGCAGCGCCGGCGGCAGCGCCGGAGGCAGCGCAGTTG
GCAGCGCCGGCGGCAGCGCGGGAGGCAGCGCGGGAGGCAGCGCGGGAGGC
AGCAAGGGCGGCAGCAAGGGCGGCAAAGCGAAGCCCGGATCAGACCACGG
CAAGAACAAGCCGACAGTCGCGCAGCGATGGAAAATCGTTGAGGCCGTCC
GAGGCGGCCGGCAAAGGAGCAAGGTTGCGGCAGACTACAATGTGGGCAAG
GCATACGTCAGCAACCTGATGAAACCCCCCATGATCGCCGCGCTTGAGAA
GGCCCATGACATGGAGCTCAACATGGGCGCCAAACGCGCACCAACGCTGG
TACACGCGGAGTTGGAGGCTCGTTTGAACCAATGGATCAAGATTGCACGA
CAACGATTTGAGCCAACCAAGCTCGGGTTGAGCGGTATCATGATCCAGAC
CCAGGCCACGAAGTTCGCGGCGGAGATGGACNGACGTGACCAACTTCACC
GCGAGCAACGGCTGGCTACATCGCTTCCTTTCTCGCTACGGCCTCGTGCA
CGTCAACCTGCACGGGGAAGCTGGTGACGTGAACAAGGCTGCGGCTGAGA
AGGAAATCGCGCACAAATCTACGATTTCAGAGGGCGAGGTTCGCTCTAGT
CTCGAAGATGTCCGCTCTTACTTGTACACACATGGAAGAGACGGCGAGTA
CAGCGAAACGGCGTACCTTCTTTCGAAGACTTTGCATTCGTTTACTCATG
AAACTCAGGTCAAGCGAAGAGCACAGGAGGG
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protein sequence of EsuBft88_53a-0001

>EsuBft88_53 ID=EsuBft88_53|Name=EsuBft88_53a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=227bp
MTAALHNRLERSREEEPSLGGKGKRRAAVDAGLGGSAGKRATPGPGSSAG
GNTGSTPGGSAGGSKGGGKGGSAGGSAGGSAVGSAGGSAGGSAGGSAGGS
KGGSKGGKAKPGSDHGKNKPTVAQRWKIVEAVRGGRQRSKVAADYNVGKA
YVSNLMKPPMIAALEKAHDMELNMGAKRAPTLVHAELEARLNQWIKIARQ
RFEPTKLGLSGIMIQTQATKFAAEMDX
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mRNA from alignment at Scaffold_232:591719..593186-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft88_53a-0001 ID=EsuBft88_53a-0001|Name=EsuBft88_53a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1468bp|location=Sequence derived from alignment at Scaffold_232:591719..593186- (Ectocarpus subulatus male Bft15b)
GTACAATGTTTCTCATCTAATTGTCACGCATTCAATACTTCCACTTTACT
CTGATGACCGCAGCACTACACAACCGTCTAGAGAGGTCTAGAGAGGAGGA
GCCATCGCTTGGAGGAAAGGGGAAGCGACGTGCGGCGGTTGATGCTGGGT
TGGGTGGTAGCGCGGGGAAACGGGCTACACCTGGTCCTGGCAGCAGCGCG
GGCGGCAATACGGGCAGCACCCCCGGCGGCAGCGCGGGCGGCAGCAAGGG
CGGCGGCAAGGGCGGCAGCGCCGGCGGCAGCGCCGGAGGCAGCGCAGTTG
GCAGCGCCGGCGGCAGCGCGGGAGGCAGCGCGGGAGGCAGCGCGGGAGGC
AGCAAGGGCGGCAGCAAGGGCGGCAAAGCGAAGCCCGGATCAGACCACGG
CAAGAACAAGCCGACAGTCGCGCAGCGATGGAAAATCGTTGAGGCCGTCC
GAGGCGGCCGGCAAAGGAGCAAGGTTGCGGCAGACTACAATGTGGGCAAG
GCATACGTCAGCAACCTGATGAAACCCCCCATGATCGCCGCGCTTGAGAA
GGCCCATGACATGGAGCTCAACATGGGCGCCAAACGCGCACCAACGCTGG
TACACGCGGAGTTGGAGGCTCGTTTGAACCAATGGATCAAGATTGCACGA
CAACGATTTGAGGTAGGGACCCCACGTCGTTCGGTCATTTTTCTGTTTTA
CATCTCTGGCCGCCTCGTTTCCTGTCTGTTTCACAGCAGTAGCCGGCGTT
GTTTTGTTGTGCTACAACCTGTTGCAGCAGGTAGGATGATAAGTTGAGAG
CTACCTGAACGCTTACATGGATTCCAAACAACCGCCAACATCGCTCGAAT
ATCCACTTCTGCCGCTGCTGCCTCACGATCATGCAGCCAACCAAGCTCGG
GTTGAGCGGTATCATGATCCAGACCCAGGCCACGAAGTTCGCGGCGGAGA
TGGACGTGACCAACTTCACCGCGAGCAACGGCTGGCTACATCGCTTCCTT
TCTCGCTACGGCCTCGTGCACGTCAACCTGCACGGGGAAGCTGGTGACGT
GAACAAGGCTGCGGCTGAGAAGAAAATCGCGCACAAATCTACGATTTCAG
AGGGCGAGGTTCGCTCTAGTCTCGAAGATGTCCGCTCTTACTTGTACACA
CATGGAAGAGACGGCGAGNGACGTGACCAACTTCACCGCGAGCAACGGCT
GGCTACATCGCTTCCTTTCTCGCTACGGCCTCGTGCACGTCAACCTGCAC
GGGGAAGCTGGTGACGTGAACAAGGCTGCGGCTGAGAAGGAAATCGCGCA
CAAATCTACGATTTCAGAGGGCGAGGTTCGCTCTAGTCTCGAAGATGTCC
GCTCTTACTTGTACACACATGGAAGAGACGGCGAGTACAGCGAAACGGCG
TACCTTCTTTCGAAGACTTTGCATTCGTTTACTCATGAAACTCAGGTCAA
GCGAAGAGCACAGGAGGG
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Coding sequence (CDS) from alignment at Scaffold_232:591719..593186-

>EsuBft88_53a-0001 ID=EsuBft88_53a-0001|Name=EsuBft88_53a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=681bp|location=Sequence derived from alignment at Scaffold_232:591719..593186- (Ectocarpus subulatus male Bft15b)
ATGACCGCAGCACTACACAACCGTCTAGAGAGGTCTAGAGAGGAGGAGCC
ATCGCTTGGAGGAAAGGGGAAGCGACGTGCGGCGGTTGATGCTGGGTTGG
GTGGTAGCGCGGGGAAACGGGCTACACCTGGTCCTGGCAGCAGCGCGGGC
GGCAATACGGGCAGCACCCCCGGCGGCAGCGCGGGCGGCAGCAAGGGCGG
CGGCAAGGGCGGCAGCGCCGGCGGCAGCGCCGGAGGCAGCGCAGTTGGCA
GCGCCGGCGGCAGCGCGGGAGGCAGCGCGGGAGGCAGCGCGGGAGGCAGC
AAGGGCGGCAGCAAGGGCGGCAAAGCGAAGCCCGGATCAGACCACGGCAA
GAACAAGCCGACAGTCGCGCAGCGATGGAAAATCGTTGAGGCCGTCCGAG
GCGGCCGGCAAAGGAGCAAGGTTGCGGCAGACTACAATGTGGGCAAGGCA
TACGTCAGCAACCTGATGAAACCCCCCATGATCGCCGCGCTTGAGAAGGC
CCATGACATGGAGCTCAACATGGGCGCCAAACGCGCACCAACGCTGGTAC
ACGCGGAGTTGGAGGCTCGTTTGAACCAATGGATCAAGATTGCACGACAA
CGATTTGAGCCAACCAAGCTCGGGTTGAGCGGTATCATGATCCAGACCCA
GGCCACGAAGTTCGCGGCGGAGATGGACNGA
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