EsuBft88_52a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft88_52a-0001
Unique Name	EsuBft88_52a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_232	contig	Scaffold_232:596634..599995 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft88_52
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	218
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft88_52a	EsuBft88_52a	Ectocarpus subulatus male Bft15b	gene	Scaffold_232 596634..599995 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft88_52a-0001	EsuBft88_52	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_232 596634..596955 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft88_52a-0001-exon	agat-exon-23380	Ectocarpus subulatus male Bft15b	exon	Scaffold_232 596634..596649 +
EsuBft88_52a-0001-exon	agat-exon-23379	Ectocarpus subulatus male Bft15b	exon	Scaffold_232 596801..597906 +
EsuBft88_52a-0001-exon	EsuBft88_52a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_232 598086..598493 +
EsuBft88_52a-0001-exon	agat-exon-23381	Ectocarpus subulatus male Bft15b	exon	Scaffold_232 599339..599995 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft88_52a-0001-cds	EsuBft88_52a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_232 596634..596649 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft88_52a-0001-exon	agat-three_prime_utr-22773	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_232 596956..597906 +
EsuBft88_52a-0001-exon	agat-three_prime_utr-22774	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_232 598086..598493 +
EsuBft88_52a-0001-exon	agat-three_prime_utr-22775	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_232 599339..599995 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_232:596634..599995+
coding sequence from alignment at Scaffold_232:596634..599995+

spliced messenger RNA

>EsuBft88_52a-0001 ID=EsuBft88_52a-0001|Name=EsuBft88_52a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2187bp|location=Sequence derived from alignment at Scaffold_232:596634..599995+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACAACAAGGGGGAAAACCGCGCGCGCGGAAAAAGCAAGTTCGACAT
CTTCGGTAAGTGGACCTCCGGGCGGACCACCACCCCCATACAGAAAGAAG
CACCCACCACGTGTCTCGTCGCTCCTGAAAACAGGTTGCTTCATGTCAAT
TATCCTCAGATAAACGAGTGAATACGGATGGATGCGTACACTATGTAGCA
TTCAAGCACTCATCATGCAAGACTGCTAAAAAGCAGATCCTTCTGAGTCC
CTCTTGTATTCCTACACATTTCGTTACTATTGCGATCCAGCGACCACCAA
GTGGACGGGCATACTAGTCTAATGGAACGCAGAGTAATTATGTTCCTACG
AATTTGGTAGTTGTAAAGTAGTCTAGCATGTAACATTTGGAGATGATAGA
CTCGACTGCGGCTGAACCATTTCCCAACAAATGCCAAGAACATGAATATC
GTGATGTTGAAGTTCAAAACAGCTGCTGCTGGAGCTGCTGCCCATGTACG
GGACCACCACATGCAAGTACTCTTCTTCCTGCGGGTTATCAAACGCTCTC
AGTACTCCTGGAAGGACGCCACGACTAGTGAGGGCTCAAGCATCGGCATG
CTTCGCCAACTGACCTTTTATTTGTCGGAGGGAGAGAAGGTACTGCGGTA
CTGTAGTGTAGTGCTGGCTGCTGTAGATCTTGCTGGAGTGGGTGCACATG
CGTGCATGTGTTTTCCGGGGGGGCACGCAGGCCGGAACAGTCCACACACA
TCCACCTACATCCAGAGTAGTGAGATCCTTGCATCCCGGGCCCCTTCTTA
TGAATCCAAAATCTTTTTGAGTGGTGGGGGCGTTTGGTAGTTCTTGTGAC
CATCTGCGGACGGAATTTCCACGTGTCTGCGCCGAGTTCCGGTGAATCCA
GGCCTCAAGCGACCTCCCTCGGGCCCTGGACTATATAGACTACCTCTGCT
GCTGTGTGACCCAGCCCACGATTGGTTGATTCACCGAGTGAGTTAGGGCC
GTCACCCCAAAGAAGCCGACTCCTATTCTCCTTCTCATGTGGCGGCAGAG
ACAGGGGCATGCATCACTGAAAACAAGCTCGTCTTCAACGTACGAGTACC
TACTTCGCGAACGTATGCACAGAACCAACCTTCAGTGTGACCGCGGCTTG
CGCGAAAAAAAATATCCGGTCGACTACAGCCAATCTTTTTTTTTTAGAAC
TAATGTGAGAAACAACAACAACAAAGCTGTGTAAATCGACGATCAGAACT
CATGGCATTGCACCACGCCCTACCACCGAAGGCGCATGTGGACTTTGGCT
ATGGATTTGGCTTTTATAGATGGATCCCTGCTACTTCTAAATGACACGGG
ATCTACTCGCTCTCAATGGACTGAAGCTATGGGCGAATAAATGCACACCG
TACGATTTGAAGTAGTTGGTCTGTGGATTCGAAAACAAATGTTTGGGTTG
CGGCGGCTGTGGCGTTTCTTCTGGAATTTCACGTTTGGGTTCAATTCATC
CCAACTCCTATTATATATTTAGTCTACGCTNCAAAAAAAAAAAAAAAGAA
CGCGCCAAAACCCGCCCAAAATGAGAAAGCTGTCAAAACGAATTATGATG
AAGAAACTACCTCATTCAAGGTCGACCAAAAATGCCAGCTCGTTGATTTT
CACACTGAACCAAGAGCGGAGTGATGAATCGTCCGCCTCTCTCTCTCTCT
CTCTGCCCGGTTGACTATACCGTGCACAAAGGAATCAAGGTCTATATCCT
GTCCGTGTTACTCGGTGCCCAACACACTACACCCAAAGCAGACATCCACA
CGCAGCAACAGTCTATGATGATTCAAGGCCACAACGAGACCAGTTGCTTC
AGATTCTACATGTCAATCCACGCGACCAATCATAAACATGTCCACCACAA
CATCTTCGTTGGACACTAACGCCATACAAACCGCGAGCTCAAACTTTCGG
TTTAACGCACCGCCGATTGCCGAATATATGTTCTTGGAGGCTTGCCAGGA
ACCAGCACGAATAGCACCATCCTCCCGGGGGAAGCACCGCCATAGCCGAA
AAAAATGTCGTAATTTTGCCCAGGAACGAATCGACGTATTACCCTCAAAG
AAGCGCCGACAAAAAAAAAACACCCTCTCAAGCTTTCCCAAAAAGAAATC
GATATATTCTCCTCAAAGAAGCGCCGACAAAAAAAAA

protein sequence of EsuBft88_52a-0001

>EsuBft88_52 ID=EsuBft88_52|Name=EsuBft88_52a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=56bp
MHNKGENRARGKSKFDIFGKWTSGRTTTPIQKEAPTTCLVAPENRLLHVN
YPQINE

mRNA from alignment at Scaffold_232:596634..599995+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft88_52a-0001 ID=EsuBft88_52a-0001|Name=EsuBft88_52a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3362bp|location=Sequence derived from alignment at Scaffold_232:596634..599995+ (Ectocarpus subulatus male Bft15b)
ATGCACAACAAGGGGGGTACGCGGCAGAATAAACGGGGTTACCCAATATC
GTACATTCTGAAGGGCCACCTGGTGCTCAGCATAAAGTTTCTGTAAAGCG
GGGAGTTTCCTTAACCCGAGCATCCTTCAAGCGGGGTCGACTGCTGTATT
ATATAGCAGTAAGGCAGAAAACCGCGCGCGCGGAAAAAGCAAGTTCGACA
TCTTCGGTAAGTGGACCTCCGGGCGGACCACCACCCCCATACAGAAAGAA
GCACCCACCACGTGTCTCGTCGCTCCTGAAAACAGGTTGCTTCATGTCAA
TTATCCTCAGATAAACGAGTGAATACGGATGGATGCGTACACTATGTAGC
ATTCAAGCACTCATCATGCAAGACTGCTAAAAAGCAGATCCTTCTGAGTC
CCTCTTGTATTCCTACACATTTCGTTACTATTGCGATCCAGCGACCACCA
AGTGGACGGGCATACTAGTCTAATGGAACGCAGAGTAATTATGTTCCTAC
GAATTTGGTAGTTGTAAAGTAGTCTAGCATGTAACATTTGGAGATGATAG
ACTCGACTGCGGCTGAACCATTTCCCAACAAATGCCAAGAACATGAATAT
CGTGATGTTGAAGTTCAAAACAGCTGCTGCTGGAGCTGCTGCCCATGTAC
GGGACCACCACATGCAAGTACTCTTCTTCCTGCGGGTTATCAAACGCTCT
CAGTACTCCTGGAAGGACGCCACGACTAGTGAGGGCTCAAGCATCGGCAT
GCTTCGCCAACTGACCTTTTATTTGTCGGAGGGAGAGAAGGTACTGCGGT
ACTGTAGTGTAGTGCTGGCTGCTGTAGATCTTGCTGGAGTGGGTGCACAT
GCGTGCATGTGTTTTCCGGGGGGGCACGCAGGCCGGAACAGTCCACACAC
ATCCACCTACATCCAGAGTAGTGAGATCCTTGCATCCCGGGCCCCTTCTT
ATGAATCCAAAATCTTTTTGAGTGGTGGGGGCGTTTGGTAGTTCTTGTGA
CCATCTGCGGACGGAATTTCCACGTGTCTGCGCCGAGTTCCGGTGAATCC
AGGCCTCAAGCGACCTCCCTCGGGCCCTGGACTATATAGACTACCTCTGC
TGCTGTGTGACCCAGCCCACGATTGGTTGATTCACCGAGTGAGTTAGGGC
CGTCACCCCAAAGAAGCCGACTCCTATTCTCCTTCTCATGTGGCGGCAGA
GACAGGGGCATGCATCACTGAAAACAAGCTCGTCTTCAACGTACGAGTAC
CTACTTCGCGAACGTATGCACAGGTAAGGCATGGATTCATCAGCCCCTGG
TACACAAATAGATACGACTACATTTGTTGTGTGTGCGCAATGAGTGGGCT
TCAACGTCGACGGGGGCAAGGAACGGCAAGGACGAACCCTCGTCTCTACA
AGCGATAAAAAAAATGAAGGCAAGAACTGCACAGAAGGGATGCCGAGAAC
AGAACCAACCTTCAGTGTGACCGCGGCTTGCGCGAAAAAAAATATCCGGT
CGACTACAGCCAATCTTTTTTTTTTAGAACTAATGTGAGAAACAACAACA
ACAAAGCTGTGTAAATCGACGATCAGAACTCATGGCATTGCACCACGCCC
TACCACCGAAGGCGCATGTGGACTTTGGCTATGGATTTGGCTTTTATAGA
TGGATCCCTGCTACTTCTAAATGACACGGGATCTACTCGCTCTCAATGGA
CTGAAGCTATGGGCGAATAAATGCACACCGTACGATTTGAAGTAGTTGGT
CTGTGGATTCGAAAACAAATGTTTGGGTTGCGGCGGCTGTGGCGTTTCTT
CTGGAATTTCACGTTTGGGTTCAATTCATCCCAACTCCTATTATATATTT
AGTCTACGCTGTGCAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGG
GGGGGGGTACTCACGTGGTGCATGCCTTAAGTTGTTACGCCATTGACAAC
GCGTCCGTCCTCGAGAGGACGGAACATTTGTCCCAGTGAGATGGGGGGCG
GGGTCATCACCATCATGTCACTCGCAGATTTCAGGCCCACGGGGGGAAGG
GGGGGGTGCTGTTGAGCGAAGGAGGCAAGGGCGACGAAGGAAGGTAAACT
CGAAAAAGAGTGCAAGCGCTTCGTGTCCATCCCCGCGCGTGGAGCGTGAA
AAAAGNCAAAAAAAAAAAAAAAGAACGCGCCAAAACCCGCCCAAAATGAG
AAAGCTGTCAAAACGAATTATGATGAAGAAACTACCTCATTCAAGGTCGA
CCAAAAATGCCAGCTCGTTGATTTTCACACTGAACCAAGAGCGGAGTGAT
GAATCGTCCGCCTCTCTCTCTCTCTCTCTGCCCGGTTGACTATACCGTGC
ACAAAGGAATCAAGGTCTATATCCTGTCCGTGTTACTCGGTGCCCAACAC
ACTACACCCAAAGCAGACATCCACACGCAGCAACAGTCTATGATGATTCA
AGGCCACAACGAGACCAGTTGCTTCAGATTCTACATGTCAATCCACGCGA
CCAATCATAAACATGTCCACCACAACATCTTCGTTGGACACTAACGCCAT
ACAAACCGCGAGCTCAAACTTTCGGTTTAACGCACCGCCGATTGCCGAAT
ATATGTTCTTGGAGGCTTGCCAGGAACCAGCACGAATAGCACCATCCTCC
CGGGGGAAGCACCGCCATAGCCGAAAAAAATGTCGTAATTTTGCCCAGGA
ACGAATCGACGTATTACCCTCAAAGAAGCGCCGACAAAAAAAAAACACCC
TCTCAAGCTTTCCCAAAAAGAAATCGATATATTCTCCTCAAAGAAGCGCC
GACAAAAAAAAA

Coding sequence (CDS) from alignment at Scaffold_232:596634..599995+

>EsuBft88_52a-0001 ID=EsuBft88_52a-0001|Name=EsuBft88_52a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=171bp|location=Sequence derived from alignment at Scaffold_232:596634..599995+ (Ectocarpus subulatus male Bft15b)
ATGCACAACAAGGGGGAAAACCGCGCGCGCGGAAAAAGCAAGTTCGACAT
CTTCGGTAAGTGGACCTCCGGGCGGACCACCACCCCCATACAGAAAGAAG
CACCCACCACGTGTCTCGTCGCTCCTGAAAACAGGTTGCTTCATGTCAAT
TATCCTCAGATAAACGAGTGA