EsuBft88_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft88_4a-0001
Unique NameEsuBft88_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_232contigScaffold_232:1069959..1073030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft88_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length127
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003010.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft88_4aEsuBft88_4aEctocarpus subulatus male Bft15bgeneScaffold_232 1069959..1073030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_4a-0001EsuBft88_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_232 1070242..1073030 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_4a-0001-exonEsuBft88_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_232 1069959..1070359 +
EsuBft88_4a-0001-exonagat-exon-23152Ectocarpus subulatus male Bft15bexonScaffold_232 1070440..1070459 +
EsuBft88_4a-0001-exonagat-exon-23151Ectocarpus subulatus male Bft15bexonScaffold_232 1071673..1072098 +
EsuBft88_4a-0001-exonagat-exon-23153Ectocarpus subulatus male Bft15bexonScaffold_232 1072602..1073030 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_4a-0001-exonagat-five_prime_utr-14752Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_232 1069959..1070241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_4a-0001-cdsEsuBft88_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_232 1070242..1070359 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft88_4a-0001 ID=EsuBft88_4a-0001|Name=EsuBft88_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1276bp|location=Sequence derived from alignment at Scaffold_232:1069959..1073030+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGGGTGGGAGGTCACGCCGCCCAACAATTCAAACGCGACCAACAGGTCT
ATCGCAGCTTCACATATCAAAATGGATTGCATCGCAAGAGGTGCCTGTTG
ATTGACTCTCTGGCTGTGGCTGCTGCTGTGAGTGAAGCCTGGCTACCTGT
GGAGCCACTCCCGGTCGTGGTCGCGCGCTACAAGCGCTGCAGTTGCATCC
AAGAGGGAGAGAGAGAGAGAAAGACAGCGGTGAGTCTTGCGTCGGTCGGT
ATCTCGACGAGGTGGGAGCTACGCGTTGAGGAGATGCATCGCGCCTACCA
CCACCACCACCACCAGCAGGAAGAAGAAGAGCGCCGGGACGACGATGGGT
ACGACGAGGATTGGGACGATGACGTGTACTACGCCGCAGCGGCCAGGCCC
GTGTTCCAAACACTCCGCGAGACCCAAAGATTCAAGCCGTTTGTGTGTCT
TCACGCGACGATCCGCTACAACGCGGGGCCCCGGTCTCCTCTCGCTGCCC
CTCGGCTCCAGGTGCCAAACATGCGACACCTGCGGGCAATGAGACCCACA
CCGACACGCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGGGGACGC
CTTTCCGCTAGGCGGCCCCTTCCACGACCTCCTCAACAACAGCAACCAAG
GCCGCGACCTCTCCTCGCCCAGGGCAAGCGTTAGCACAGACCCAAGCGAT
ACGCCGTCTTCGTCCACGGCGTCCCTTGGCGACGGCAGCGGCGGCAGCGT
GCCCCCGCTGGGACAGCTAACGCCCCCGTCGCTGCCTGCGGGAGCGGACG
GGGCGGGGGTAGGCGTGGGGGCCGGTGATGATGGTTCTGCAACCCAGGGG
ACGATGTTCACGAGCCACCGGACTGCAGAAACGCCTGTCGCCGTCGCCTG
GCCCTCGCTTGGCGCAAGGGACAACAGCAACAACAACACCCACGCTGGCA
TCAAGGTAGCGGTGCGCCAGCGCGAAGGGAACGAGAGCAGCCTCGTGCAC
TTGAGGGACTCGCCGAGGCGGCGACGCGGCGGCAGGGACGACGCCAACCG
CCCGAGCAACCGAACACAGCTCGAGGGTAAGATGGCATCGTCGTCGCCGC
CTTCGACGGCGGCGGCCGCCACCGGGCGGGGGCAACAAGGGCCCCGGAGG
CCTACCACGCCAACATCGTCATCGCCAGCGGCAGTCGCCGCGGGCGTGGC
GGCGGGTGTTGCCCCTGCTTGTTCGGCCGGCGGCGGGAAGAGGAAGAGGC
CGGCATCGGCGACCGGACAGAGGTAG
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protein sequence of EsuBft88_4a-0001

>EsuBft88_4 ID=EsuBft88_4|Name=EsuBft88_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=330bp
MHRAYHHHHHQQEEEERRDDDGYDEDWDDDVYYAAAARPVFQTLRETQRF
KPFVCLHATIRYNAGPRSPLAAPRLQVPNMRHLRAMRPTPTRAAAAAAAA
AAAGDAFPLGGPFHDLLNNSNQGRDLSSPRASVSTDPSDTPSSSTASLGD
GSGGSVPPLGQLTPPSLPAGADGAGVGVGAGDDGSATQGTMFTSHRTAET
PVAVAWPSLGARDNSNNNTHAGIKVAVRQREGNESSLVHLRDSPRRRRGG
RDDANRPSNRTQLEGKMASSSPPSTAAAATGRGQQGPRRPTTPTSSSPAA
VAAGVAAGVAPACSAGGGKRKRPASATGQR
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mRNA from alignment at Scaffold_232:1069959..1073030+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft88_4a-0001 ID=EsuBft88_4a-0001|Name=EsuBft88_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3072bp|location=Sequence derived from alignment at Scaffold_232:1069959..1073030+ (Ectocarpus subulatus male Bft15b)
TTGGGTGGGAGGTCACGCCGCCCAACAATTCAAACGCGACCAACAGGTCT
ATCGCAGCTTCACATATCAAAATGGATTGCATCGCAAGAGGTGCCTGTTG
ATTGACTCTCTGGCTGTGGCTGCTGCTGTGAGTGAAGCCTGGCTACCTGT
GGAGCCACTCCCGGTCGTGGTCGCGCGCTACAAGCGCTGCAGTTGCATCC
AAGAGGGAGAGAGAGAGAGAAAGACAGCGGTGAGTCTTGCGTCGGTCGGT
ATCTCGACGAGGTGGGAGCTACGCGTTGAGGAGATGCATCGCGCCTACCA
CCACCACCACCACCAGCAGGAAGAAGAAGAGCGCCGGGACGACGATGGGT
ACGACGAGGATTGGGACGATGACGTGTACTACGCCGCAGCGGCCAGGCCC
GGTGAGTGTGCTTGCACCTCCACCAAGCTTTTCGTGTAGCGAAGTACGAA
TCCCATGTTCAGTTCAACTCCGCAGCAGCAGTGTTCCAAACACTCCGCGA
GGTACTCCGACCGTGAAATCTGTACCATGAAACATGAAACCCGTTCATCG
TCTTTATCTCCTGGTTTTACATCCAGTTGTACGCACCTTCGCCAATAGAT
CCGGCGCGTGCACTGCATGGAGAACTTGACATTCTAAGTCACGGTCTGAA
GCGATTAACTATTTTCTACAGCAATAGATGAGCGGAAGCTCGGCGGGACT
GCTCTGAATGTGTACAAGTTTTCCTGTCGACGCGGCACTTGTCGGACTTC
TTAGAGAGCGCTCGTGACGCTCACCTGCAAGCAGACTCGACGTGGAGCGA
GAGGGCAACGGGTCGCGATAACCACACTTCTAGCGGAGGAGGCGGGCAAG
GGGGGGGGCAGGGGTCGGGAGGAGCAGGAGGAGGCGGTGCACGGGGGGGG
GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
GGGGGGGGGGCGCAGCGGGCGAGAGCGAGCGACCACGAAACGGCACTACA
TGAAGGTGCGAACGGCACTACATGAAGGTGCGCACGGCACTACATGAAAG
TTCCAAACGGTCACTTCCCACTTCGAAATGAGGCTGCTGAAGAACCTGAA
GATTTTGCAGATGTTACACATAGGCAAAGGTGTAAATGCAACACCTGTGG
ACGTTTGGCCAAAGATGAAACGCTCGCCTTCATGGGCACGACTTCAAAGT
TCTGTAGGAGTGTACTCGTGTGTCGATTTGACCATATGGACAACCCATAT
CTGTTTGTAGTACCCGAACGGTATGTAGTTGAACGGTACGCGTTGTACAC
GAGAATGTTGGGGCACAGCAATGGAACCACTGCGATAGCGATAGGCAGTG
GAAGCCGTTACGCTGTCAAGCACAACCGTTTACATGTTGACATGGCACGG
GGCCTGTCTATGTCGGCCGTGAGAGTGACGTCTTTGATGTGACAACCGAG
AGAGATCTGTATGTTTTCTGAAACGGCCGTCACCTGACTTTACACTTGAA
AAGACATCGGCTTGTTAGCGCTGACGCGGGGCTGCCCACCGCGGCTCACC
GACAACGCCGCGCTTCCTCACCAGCAGCAGCAACATTTTCTCTCGAGACA
ATCCCAACCAACAGACCCAAAGATTCAAGCCGTTTGTGTGTCTTCACGCG
ACGATCCGCTACAACGCGGGGCCCCGGTCTCCTCTCGCTGCCCCTCGGCT
CCAGGTGCCAAACATGCGACACCTGCGGGCAATGAGACCCACACCGACAC
GCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGGGGACGCCTTTCCG
CTAGGCGGCCCCTTCCACGACCTCCTCAACAACAGCAACCAAGGCCGCGA
CCTCTCCTCGCCCAGGGCAAGCGTTAGCACAGACCCAAGCGATACGCCGT
CTTCGTCCACGGCGTCCCTTGGCGACGGCAGCGGCGGCAGCGTGCCCCCG
CTGGGACAGCTAACGCCCCCGTCGCTGCCTGCGGGAGCGGACGGGGCGGG
GGTAGGCGTGGGGGCCGGTGATGATGGTTCTGCAACCCAGGTTCGTTTTT
GTTTTTTGTTTGTTCCATTCGCCAGCTATCGAGGCGTCCAAGTCCGAACT
TTGTTTTTCTTCTGTTGTGGGGGAGGTGATATTTTTGGTGTTTTTTTTTT
TCTGTTTGCAGTTCGCGTTGAGATTTGTGGTTAGCCCTTGCTGGTTCTCT
GGCATCCGTATCTGCCTATGTGATTGCCTCTCTGCAGACTTGTCCGGCGC
ACCAGGCAAGCTTGGGGACTAGCGCGCGTCTCTCCCAAAGGCGCATAGCT
TCATCATCCGTACAAGGTCGTGCGACGGCTTCAACAACGCGATATTGATT
TGAGGCATCGTTTTAAGAACTATGCTCGACTACCGCTGTGCGGCGACTTA
CGGCTGGCCCTCCAAGCGACGCATTTTCGTTCACTCAATGCGCGTTTGTT
ATTATTCCAAGGTAAAGACACGTTTCACGAGATGTCTTCCCCCTCCCGAG
CTAACCTTTGCTTCCACCTGTCTCTCTGCACCTCCCCACCCAGGGGACGA
TGTTCACGAGCCACCGGACTGCAGAAACGCCTGTCGCCGTCGCCTGGCCC
TCGCTTGGCGCAAGGGACAACAGCAACAACAACACCCACGCTGGCATCAA
GGTAGCGGTGCGCCAGCGCGAAGGGAACGAGAGCAGCCTCGTGCACTTGA
GGGACTCGCCGAGGCGGCGACGCGGCGGCAGGGACGACGCCAACCGCCCG
AGCAACCGAACACAGCTCGAGGGTAAGATGGCATCGTCGTCGCCGCCTTC
GACGGCGGCGGCCGCCACCGGGCGGGGGCAACAAGGGCCCCGGAGGCCTA
CCACGCCAACATCGTCATCGCCAGCGGCAGTCGCCGCGGGCGTGGCGGCG
GGTGTTGCCCCTGCTTGTTCGGCCGGCGGCGGGAAGAGGAAGAGGCCGGC
ATCGGCGACCGGACAGAGGTAG
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Coding sequence (CDS) from alignment at Scaffold_232:1069959..1073030+

>EsuBft88_4a-0001 ID=EsuBft88_4a-0001|Name=EsuBft88_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=993bp|location=Sequence derived from alignment at Scaffold_232:1069959..1073030+ (Ectocarpus subulatus male Bft15b)
ATGCATCGCGCCTACCACCACCACCACCACCAGCAGGAAGAAGAAGAGCG
CCGGGACGACGATGGGTACGACGAGGATTGGGACGATGACGTGTACTACG
CCGCAGCGGCCAGGCCCGTGTTCCAAACACTCCGCGAGACCCAAAGATTC
AAGCCGTTTGTGTGTCTTCACGCGACGATCCGCTACAACGCGGGGCCCCG
GTCTCCTCTCGCTGCCCCTCGGCTCCAGGTGCCAAACATGCGACACCTGC
GGGCAATGAGACCCACACCGACACGCGCCGCCGCCGCCGCCGCCGCCGCC
GCCGCCGCCGGGGACGCCTTTCCGCTAGGCGGCCCCTTCCACGACCTCCT
CAACAACAGCAACCAAGGCCGCGACCTCTCCTCGCCCAGGGCAAGCGTTA
GCACAGACCCAAGCGATACGCCGTCTTCGTCCACGGCGTCCCTTGGCGAC
GGCAGCGGCGGCAGCGTGCCCCCGCTGGGACAGCTAACGCCCCCGTCGCT
GCCTGCGGGAGCGGACGGGGCGGGGGTAGGCGTGGGGGCCGGTGATGATG
GTTCTGCAACCCAGGGGACGATGTTCACGAGCCACCGGACTGCAGAAACG
CCTGTCGCCGTCGCCTGGCCCTCGCTTGGCGCAAGGGACAACAGCAACAA
CAACACCCACGCTGGCATCAAGGTAGCGGTGCGCCAGCGCGAAGGGAACG
AGAGCAGCCTCGTGCACTTGAGGGACTCGCCGAGGCGGCGACGCGGCGGC
AGGGACGACGCCAACCGCCCGAGCAACCGAACACAGCTCGAGGGTAAGAT
GGCATCGTCGTCGCCGCCTTCGACGGCGGCGGCCGCCACCGGGCGGGGGC
AACAAGGGCCCCGGAGGCCTACCACGCCAACATCGTCATCGCCAGCGGCA
GTCGCCGCGGGCGTGGCGGCGGGTGTTGCCCCTGCTTGTTCGGCCGGCGG
CGGGAAGAGGAAGAGGCCGGCATCGGCGACCGGACAGAGGTAG
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