EsuBft88_44a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft88_44a-0001
Unique NameEsuBft88_44a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_232contigScaffold_232:659844..660140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft88_44
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length29
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft88_44aEsuBft88_44aEctocarpus subulatus male Bft15bgeneScaffold_232 659844..660140 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_44a-0001-exonEsuBft88_44a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_232 659844..660140 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_44a-0001-exonagat-five_prime_utr-14748Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_232 659844..659870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_44a-0001-cdsEsuBft88_44a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_232 659871..660140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_44a-0001EsuBft88_44Ectocarpus subulatus male Bft15bpolypeptideScaffold_232 659871..660140 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft88_44a-0001 ID=EsuBft88_44a-0001|Name=EsuBft88_44a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=297bp|location=Sequence derived from alignment at Scaffold_232:659844..660140+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCTACGCTTAGTCTGGAGAAGGGGTTAATGCAGAGAGGGAGACACCCGAC
AATAAGGGAGCGTAGGACATTCCACAAGGCTTGTAGTGGAGGGATAGAAG
GAGAAAGGAAAAGGGAAACGGAATTGATCGACTACCGCACGGCGGACGCC
CGACCTCAGCAGGTGCAGAGCTTCGCGACAACAGCAACGGCACGGACTAG
ACCGTTGGAAGCCCTCTCTGAGCTCTCCTTGGCATGGCGGATGCTGACAG
ATGCAGCAACGGTGGCTTATACCTTGGCCCCGTGCTCAGGCCGTTAA
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protein sequence of EsuBft88_44a-0001

>EsuBft88_44 ID=EsuBft88_44|Name=EsuBft88_44a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=89bp
MQRGRHPTIRERRTFHKACSGGIEGERKRETELIDYRTADARPQQVQSFA
TTATARTRPLEALSELSLAWRMLTDAATVAYTLAPCSGR
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mRNA from alignment at Scaffold_232:659844..660140+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft88_44a-0001 ID=EsuBft88_44a-0001|Name=EsuBft88_44a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=297bp|location=Sequence derived from alignment at Scaffold_232:659844..660140+ (Ectocarpus subulatus male Bft15b)
CCTACGCTTAGTCTGGAGAAGGGGTTAATGCAGAGAGGGAGACACCCGAC
AATAAGGGAGCGTAGGACATTCCACAAGGCTTGTAGTGGAGGGATAGAAG
GAGAAAGGAAAAGGGAAACGGAATTGATCGACTACCGCACGGCGGACGCC
CGACCTCAGCAGGTGCAGAGCTTCGCGACAACAGCAACGGCACGGACTAG
ACCGTTGGAAGCCCTCTCTGAGCTCTCCTTGGCATGGCGGATGCTGACAG
ATGCAGCAACGGTGGCTTATACCTTGGCCCCGTGCTCAGGCCGTTAA
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Coding sequence (CDS) from alignment at Scaffold_232:659844..660140+

>EsuBft88_44a-0001 ID=EsuBft88_44a-0001|Name=EsuBft88_44a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=270bp|location=Sequence derived from alignment at Scaffold_232:659844..660140+ (Ectocarpus subulatus male Bft15b)
ATGCAGAGAGGGAGACACCCGACAATAAGGGAGCGTAGGACATTCCACAA
GGCTTGTAGTGGAGGGATAGAAGGAGAAAGGAAAAGGGAAACGGAATTGA
TCGACTACCGCACGGCGGACGCCCGACCTCAGCAGGTGCAGAGCTTCGCG
ACAACAGCAACGGCACGGACTAGACCGTTGGAAGCCCTCTCTGAGCTCTC
CTTGGCATGGCGGATGCTGACAGATGCAGCAACGGTGGCTTATACCTTGG
CCCCGTGCTCAGGCCGTTAA
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