EsuBft88_26a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft88_26a-0001
Unique NameEsuBft88_26a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_232contigScaffold_232:813739..815881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G206
ProteomeIdEsuBft88_26
Protein domainsSSF161219
Protein domainsIPR008913
Ownerapollo_admin@sb-roscoff.fr
NoteUncharacterized protein C3B9.05 OS:Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN:SPBC3B9.05 PE:3 SV:2 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length893
Hectar predicted targeting categoryother localisation
Evalue2.24e-64
EggNOG OGsKOG1940@1|root,KOG1940@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_003420.1
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K16276
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008270,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:1990542
Descriptionzinc ion binding
COG categoryS
BRITEko00000,ko04121
Cross References
External references for this mRNA
DatabaseAccession
GO0008270
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft88_26aEsuBft88_26aEctocarpus subulatus male Bft15bgeneScaffold_232 813739..815881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_26a-0001EsuBft88_26Ectocarpus subulatus male Bft15bpolypeptideScaffold_232 814086..815650 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_26a-0001-exonagat-exon-23269Ectocarpus subulatus male Bft15bexonScaffold_232 813739..814112 +
EsuBft88_26a-0001-exonEsuBft88_26a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_232 814738..814836 +
EsuBft88_26a-0001-exonagat-exon-23268Ectocarpus subulatus male Bft15bexonScaffold_232 815180..815226 +
EsuBft88_26a-0001-exonagat-exon-23270Ectocarpus subulatus male Bft15bexonScaffold_232 815509..815881 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_26a-0001-exonagat-five_prime_utr-14725Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_232 813739..814085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_26a-0001-cdsEsuBft88_26a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_232 814086..814112 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft88_26a-0001-exonagat-three_prime_utr-22749Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_232 815651..815881 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft88_26a-0001 ID=EsuBft88_26a-0001|Name=EsuBft88_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=893bp|location=Sequence derived from alignment at Scaffold_232:813739..815881+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGCAGCAAGTCCACAGCAGCAGCCGTTTCTCCCGAAACGCACGCGTTCG
CGAGCAAGTGTTGTTGTATGCACAGATTACCGCAGCTGGGTGCAGAATAC
ACAACGCAGCAACCTTCACTAAGAGCGGGCAAAGGGGACCATCGCGAGGA
AATTTCTCGGGAGGGCGGTGAGAGTACAGGGAGACGTGACAGAGAGTCAA
GGGGGAGAAATAGGTGTGTGAGAGAGAGAGGGAGAGAGAACGACCGACAC
AGAGAGAGCCAGTGCAGCATACAACGGGGGCCAAGGCACGAGAGAATCCG
CTAATAATCGACCACATCGAGGAGACACCGATAGAAGACATTTACAGATG
TGTAAGCACATCATCAACGCGAAGGTCAGCATTCAATCCCCGTGTTGTAA
GAGATGGTACGAGTGCCCGGAGTGTCACGACGAGCGTGAGAATCACCCCC
AACGTATAAGTGCAAAAAACGTGGCGTTCGCGTGCAAGACGTGCCGGAAG
ATTTTCGTGAAAGATCTCAGCATCTACGGTACAGAGGACAGCGCTTGCCC
GCACTGCGAGACGGTGTTTGTGCTACCTGCGGTGACTCCCGAGGCAAAGG
TGGCGCAACTCGCGCTGAGCATACTAGCGGCGGAGGTGTCCGCTGAAGTG
TCAAAGTTCTGAAAGAGATTGCGTGCGTGTAAACTGTTGTGGGGGGTTGT
ACAAGTACCCCTCCAAGAGACTGTTGGAGCCCCTTGACTACGTTGGACCA
TGTCATTCGCCGCCCGCAGTGCGTACTTTCTGGAAGTGGAGGAGCATCGT
ATAGCGGAGCGCGGCTATGCGCAGGTTGGTCTCTGACGCATGTTATATGT
AGAAGGGGATGCGTCTTTTTGTCAGACGAATTGCACTCGTTTT
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protein sequence of EsuBft88_26a-0001

>EsuBft88_26 ID=EsuBft88_26|Name=EsuBft88_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=104bp
MCKHIINAKVSIQSPCCKRWYECPECHDERENHPQRISAKNVAFACKTCR
KIFVKDLSIYGTEDSACPHCETVFVLPAVTPEAKVAQLALSILAAEVSAE
VSKF
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mRNA from alignment at Scaffold_232:813739..815881+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft88_26a-0001 ID=EsuBft88_26a-0001|Name=EsuBft88_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2143bp|location=Sequence derived from alignment at Scaffold_232:813739..815881+ (Ectocarpus subulatus male Bft15b)
GTGCAGCAAGTCCACAGCAGCAGCCGTTTCTCCCGAAACGCACGCGTTCG
CGAGCAAGTGTTGTTGTATGCACAGATTACCGCAGCTGGGTGCAGAATAC
ACAACGCAGCAACCTTCACTAAGAGCGGGCAAAGGGGACCATCGCGAGGA
AATTTCTCGGGAGGGCGGTGAGAGTACAGGGAGACGTGACAGAGAGTCAA
GGGGGAGAAATAGGTGTGTGAGAGAGAGAGGGAGAGAGAACGACCGACAC
AGAGAGAGCCAGTGCAGCATACAACGGGGGCCAAGGCACGAGAGAATCCG
CTAATAATCGACCACATCGAGGAGACACCGATAGAAGACATTTACAGATG
TGTAAGCACATCATCAACGCGAAGGTACGCCGCATTGTAGTGCAGTACTA
CAACGCAAGCAACGCATGTGTACAAGCGCACACATTTTTGAGAAAAGTCG
ACAAGACTGCTTGTGTACAACGAACTTTAAGCCTGTACAAGTAGACCTTT
CTCTTTTGTGTGTGATCGCACTGCTGTGTCGCGACACCGGAGAAGAAGTT
TACCAAAGGTGGTCGACTATGTAGACCGTGACGGTGGTCACATATCGGTG
CGCAGTCTACAAAAAATCTCTTTACGGACCAGACACAGATTAAGCCACGG
TCAGGGAATTCATTCGCGACTAAGCAGACGGAGGTAGAGGGAGGCCACCC
CTTCGTCAGTGAGGTAGTATATCTCCCCGAAATGCGCAGGACATGCATGT
CCGTCCGTGGAGAAGAGGTCACGTCCGGGAGAAATCTTTGCGGCAGGAGT
CCAAGATGTATCGTTGAGTCGTAGCGCAGCCTGCAGTAGATACCGGCAAT
TCCTTGAAGATTGCGTAGCGTTCGTTGTGGTTCGAGCGCGCTTCTTGTCT
GCACAGGCACCGCCGCCGTGTTACAACGGGTCGCACATGCGTTACACCGA
CCTGCAAGCCCGGCGATCGCAGTAAAAGCTCATGCTTGTCCCCGGCCAGG
TCAGCATTCAATCCCCGTGTTGTAAGAGATGGTACGAGTGCCCGGAGTGT
CACGACGAGCGTGAGAATCACCCCCAACGTATAAGTGCAAAAAACGTGGT
GAGTTATGTACGCTATTCTTGTGCAATGTTACGAGTGGGTAGAAGATGAC
TGAGCATGTTCTGGAAATATCTACGACGCACCGAACGGAGTGACTATCAA
AAAGAATGGGGTGCGGCTGGCAGGGTGACGTAAACTCGGACCTACATTGG
TGTCGATATACACGACGAAGCTGTCCGTAGTATTATTCCAGCTCAATGCG
AGAGTCATCGTTGGCTGCACGACCAACGTCTCAGATAGACCCGTAGTCCG
GCAGTGGACAATCTTTAGTGAACAACTCTTTGCATGTGCCATCTCTCGCT
CCAGCTTTCGTCCCACGCACACATCCCCGGCATCGAGACAGGCGTTCGCG
TGCAAGACGTGCCGGAAGATTTTCGTGAAAGATCTCAGGTAAGTCGGCTC
ACGATATATACCTGCATGAAAGCTTCGTAGGGGAATACGATGTGCCAAAC
AAAGTTATCGTAGGGGAGTACGATGTACCAAACAAAGCGTAATTGAGGTT
ATTAGGTAAAGGCCAAACCATTAGACCACTCAGTCACATTTAGTCTTTAT
GTTAATAGAGTCCTAATCGGAAGGGTTATGGTGCATGCTCGCAAAATAAC
ACATACATTCGCGCCGCTCGTGTTGTTTTTCCTCAATCCTCCCCTGCAAC
CGTATCGTTACCGGGACCAGCATCTACGGTACAGAGGACAGCGCTTGCCC
GCACTGCGAGACGGTGTTTGTGCTACCTGCGGTGACTCCCGAGGCAAAGG
TGGCGCAACTCGCGCTGAGCATACTAGCGGCGGAGGTGTCCGCTGAAGTG
TCAAAGTTCTGAAAGAGATTGCGTGCGTGTAAACTGTTGTGGGGGGTTGT
ACAAGTACCCCTCCAAGAGACTGTTGGAGCCCCTTGACTACGTTGGACCA
TGTCATTCGCCGCCCGCAGTGCGTACTTTCTGGAAGTGGAGGAGCATCGT
ATAGCGGAGCGCGGCTATGCGCAGGTTGGTCTCTGACGCATGTTATATGT
AGAAGGGGATGCGTCTTTTTGTCAGACGAATTGCACTCGTTTT
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Coding sequence (CDS) from alignment at Scaffold_232:813739..815881+

>EsuBft88_26a-0001 ID=EsuBft88_26a-0001|Name=EsuBft88_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=315bp|location=Sequence derived from alignment at Scaffold_232:813739..815881+ (Ectocarpus subulatus male Bft15b)
ATGTGTAAGCACATCATCAACGCGAAGGTCAGCATTCAATCCCCGTGTTG
TAAGAGATGGTACGAGTGCCCGGAGTGTCACGACGAGCGTGAGAATCACC
CCCAACGTATAAGTGCAAAAAACGTGGCGTTCGCGTGCAAGACGTGCCGG
AAGATTTTCGTGAAAGATCTCAGCATCTACGGTACAGAGGACAGCGCTTG
CCCGCACTGCGAGACGGTGTTTGTGCTACCTGCGGTGACTCCCGAGGCAA
AGGTGGCGCAACTCGCGCTGAGCATACTAGCGGCGGAGGTGTCCGCTGAA
GTGTCAAAGTTCTGA
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