EsuBft889_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft889_9a-0001
Unique Name	EsuBft889_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_323	contig	Scaffold_323:29137..34372 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft889_9
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE
Protein domains	SignalP-noTM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Length	220
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-04_002390.1
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft889_9a	EsuBft889_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_323 29137..34372 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft889_9a-0001	EsuBft889_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_323 29300..33339 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft889_9a-0001-exon	agat-exon-23568	Ectocarpus subulatus male Bft15b	exon	Scaffold_323 29137..29663 +
EsuBft889_9a-0001-exon	agat-exon-23567	Ectocarpus subulatus male Bft15b	exon	Scaffold_323 31828..31979 +
EsuBft889_9a-0001-exon	EsuBft889_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_323 32298..32765 +
EsuBft889_9a-0001-exon	agat-exon-23566	Ectocarpus subulatus male Bft15b	exon	Scaffold_323 33319..34372 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft889_9a-0001-exon	agat-five_prime_utr-14709	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_323 29137..29299 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft889_9a-0001-cds	EsuBft889_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_323 29300..29663 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft889_9a-0001-exon	agat-three_prime_utr-22728	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_323 33340..34372 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_323:29137..34372+
coding sequence from alignment at Scaffold_323:29137..34372+

spliced messenger RNA

>EsuBft889_9a-0001 ID=EsuBft889_9a-0001|Name=EsuBft889_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2201bp|location=Sequence derived from alignment at Scaffold_323:29137..34372+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TAGTAAGCAGGCACGTGCCTTCCCGCCAAGAAACCGTGACCTCATCTCCG
CCTCCCTCCCTCCCTCTCACTCGCTCTCTACCTGCCACAACTCAGCCTCC
TCATTGGTAGTTTGGCGCTACTCTGCTGTGGAGCCGGGGGGGACAAAACC
TAGCAATAATAAAATGAGAACGTGCTTGCTGTCGGCGGCGCTGATGTTCC
TAGGAGGAGCACAAGGTTTCATCAACAGCCTGCCGAGATTACCCACTCGT
GACATCACTACCACGCCCGGGCGATGTAGAGTACCACGACTGGCCCTGAC
ACCACCCCGAAAGCCCAATACTGGGGCGGGAGCCGGGTCTGCTGCTGCCG
GGGGCGATGACAATGGCGGGGCGAATGATATGTTGAAATCGACCAGCGGG
ATCGCCAGAGCGCCTCTCCGGATAACTCCCAACTTTCACCCCCAGGAGAA
GCGGAGGCCAAAGACCTTTGTAGATAAGGACATCACCTATGGGGCGTTCT
TGACGGAAGAGAGCTTTGATATCGCCGCGATGGCTTGGGAAGAGTTCTCC
GACTTTGTTCGGCGCACGGTCGAGCGGAACTTGAACGGAGCGCAGTTCGA
CTTCGACACTCGGCAGTGGTCGAGCAGCATTCGCAAGTGGTGGAGCAGGG
CCGTGGAGATGGACGTGCAAGCCAAAGCCGACCTTTTCCGGCTTTACGAT
AGCAGCGTAGGGCAGAGGGACGCCTGGGGAAACCAGGCCTTGAAAGTGGA
CGCAAGGGTTGAGGACGAATGGGACAGCATCTACGTAGATTGCCAAGATG
GCGCCGACGTAGATTTTCAGGACTGGTCATTCGACAGCAGTATCAGCTGT
GGGGTCGAGGGGGCGGCGACAGGGAGTGACATGACGGATTCGAGATTATC
AGGACCATCATCAAAAGCTTTGCCGTCATCGTTGCGGAAGGAGGGGGGTG
GTTGGGGCGCGAGTCCTGGAAGTGCAAGCACTGGTGGCTCTCGCTCGGCG
CTCATGGCTGCCATGGACGCGTTCCAAGAGGAGGAGGAAGCGGAGGAGGG
GGAAGAAGACGGGACGGGCAGCGAGGGCTTCGATGATGAGGAGATTATCG
ACTGTGCGATCAGGGGACGGTGGACTTTCACAAACAACGATGACCCGCCC
CACTTTTCTCCACAATAGTGCCGGTGGCACCGAAGAGGATCTCTTGATCT
CTTCGATGTGCGCGGCGGCCCGCGTAGACAAAAGGGCTCAACGCCGCGTG
TACATAACATCGGGAAGGGGGGAGGGTACCATGAATTGTAGCGAGATGTG
AAAATATGTGGAAAATGTATCGTGCTTTTGAGTACCCCGTGGGAGGTAGA
CCACGGCTATGCGTGGATGCCACATTTGTCTGTGGATGCATGTTTATTAC
GGGGGTGTTTCGAAGCAGACGAAAGTGCCGCACCGTGCACAGGTTCAAGA
GAGACGAGGGGAAGTGCGTGTCTGTGCATGCGATGCCGTCCTTCTGGCTG
CCCGAGTAGTGTGAGGGGTGATTCTGAAAGTGTATTCTGGTCCCATGCAT
ATTTACTTCTACTTGAAGTATGATACATACGGTAGTTCGTTGAAAGTGGG
GTGCGCAAAAGGAGTACTATTGTAAGGTTGCGAGCGTGGGGGAGCATGCA
TGGAGTGGTTAGGGGGTTGTCACACGTCCCTTTCGTGTACAATTTGTTTT
TCCTTACTCTCCTAAATGTTGGCGGTTGGGTCCCAACCAAACGAGTTGTG
TTTTCAGTCCCTCATCGTTTTGTCCGTTGAGCGCTGCCATCCGCTTGGAA
GGCTCTTTCTTGAGGATGTAGGTTGTTTCTCCGTGTACAGGCATGCGGGC
AATCCTGTTTTGTGTGTCTACCTCACCTTGAGGCATCATGTTGGTATTGG
AGCGGTGTGTATTTGTGAGGAATGTATTGATAAGAGAAATGGTTTTCGGA
AGGACGGACAAATAGTGCCGACAGAGGCTTGCCAGCTTTTTTCACGGTCG
ACAAACATCAAGAGAGAGAGTAGTTGCATCGTTGGTTGGACACGGTTGCC
CTTATTGCGTTGCCGTCGGAGAGCAGGCGGAGGTCATGTGGATAAAACGT
GTCAAAACATCCATCCCTGCTGCATGCTACTGAAGGAAACGCCTCGCCCA
AGAGCGAAAATGCACGTGTAGATAACACGGCAGCATCCGCCGCCATTGTT
T

protein sequence of EsuBft889_9a-0001

>EsuBft889_9 ID=EsuBft889_9|Name=EsuBft889_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=334bp
MRTCLLSAALMFLGGAQGFINSLPRLPTRDITTTPGRCRVPRLALTPPRK
PNTGAGAGSAAAGGDDNGGANDMLKSTSGIARAPLRITPNFHPQEKRRPK
TFVDKDITYGAFLTEESFDIAAMAWEEFSDFVRRTVERNLNGAQFDFDTR
QWSSSIRKWWSRAVEMDVQAKADLFRLYDSSVGQRDAWGNQALKVDARVE
DEWDSIYVDCQDGADVDFQDWSFDSSISCGVEGAATGSDMTDSRLSGPSS
KALPSSLRKEGGGWGASPGSASTGGSRSALMAAMDAFQEEEEAEEGEEDG
TGSEGFDDEEIIDCAIRGRWTFTNNDDPPHFSPQ

mRNA from alignment at Scaffold_323:29137..34372+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft889_9a-0001 ID=EsuBft889_9a-0001|Name=EsuBft889_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5236bp|location=Sequence derived from alignment at Scaffold_323:29137..34372+ (Ectocarpus subulatus male Bft15b)
TAGTAAGCAGGCACGTGCCTTCCCGCCAAGAAACCGTGACCTCATCTCCG
CCTCCCTCCCTCCCTCTCACTCGCTCTCTACCTGCCACAACTCAGCCTCC
TCATTGGTAGTTTGGCGCTACTCTGCTGTGGAGCCGGGGGGGACAAAACC
TAGCAATAATAAAATGAGAACGTGCTTGCTGTCGGCGGCGCTGATGTTCC
TAGGAGGAGCACAAGGTTTCATCAACAGCCTGCCGAGATTACCCACTCGT
GACATCACTACCACGCCCGGGCGATGTAGAGTACCACGACTGGCCCTGAC
ACCACCCCGAAAGCCCAATACTGGGGCGGGAGCCGGGTCTGCTGCTGCCG
GGGGCGATGACAATGGCGGGGCGAATGATATGTTGAAATCGACCAGCGGG
ATCGCCAGAGCGCCTCTCCGGATAACTCCCAACTTTCACCCCCAGGAGAA
GCGGAGGCCAAAGACCTTTGTAGATAAGGACATCACCTATGGGGCGTTCT
TGACGGAAGAGAGCTTTGATATCGCCGGTGAGTCGACAGAGTAGTTTCCT
CTACTTGAAAAACGCGTGTGTTGATGATGTTTTGACAAAATTCTGGGTCA
ACCGTACTGGCTGCAACTTGGCTGTTCCTGACGTGACGCCGTCTAATCTA
CAAGAGTGTGTAGTACGTACGCGAATGCAAACCGTCAACCCCGAGCATCG
GGAAAGGGGGCGAATTGTTGCCAACACATCACCGAGACTGGACTTTCACG
AGGTAATCTAATACCAATGCGCACAAGAGCAAGAGCTCCAGGAGCTTGTA
TTTCTACCTGTGGGCGTACCCTGCTGGAAGACGCAAACATATCTCTCTGC
GCCCACAGCAAGAAAGTGTTGGCTCGGGTACGATGGAGTAGGACTACAAA
AATCGTGTAGGACAGAAAACACGCGAGTTGAAGGATCGTAGGCTTCTCAA
AAGATCCACGGAGAGTGGGCATTGCAGCATGGCATGTCACCCTATTACCA
TGATCTGAGAGTAACGTTTATGCATTATATGATTGGTGTTATCCAACGTA
CATCGGTCGGTATGTTGACTTGTCGTTTACTCCTGTGCCCACCCTTTTTG
TTGACAAACGCCCAGACCATCAGTCGCTCCTAAGCCCCAACGCACGGAAG
TAGTGTGTTTCGAACCCCTCTACAACATATCGGGAATTTCAATGAAAAAA
CTCCGCATCCCGTTCGACTGTGGGTATATCTCGAACGGGTAGTCTTTGTG
TGTGTAGCATATCTTCCAATACACAGCGCAAGATTAATGGAGTTGGTGTA
AAACAGCGAAACAAGACGCTCACTTGTCGTAAAAAATGTGGCAAGGAGGT
ACCTCGCACCAGGAAGGGATGCACCTACAAGTGCTGACCGCACACATATC
GCAAACGTCGTAGCAAACCACAACCACATACGAAAGAGATCGCCCCCCCT
ACCGAAACCATTTGATTTTCAAGGCTATTCTCGGCAAAGATTGTTTGTTG
GCAGCGTTTACCGCGGTAACCGGCCACCACGCAGTGCGCGGCAATTATTG
GACGGCGACTGCGCACCAGGTGTACGTGCTGGATGCTCTCCGCTCCCTAT
GCATGTGACCACCGCTCCAGAACGCTCTGATCGAGTGTTTAATGCAAACA
CATCTTTGTGGCATCTTGTGGTATGCGCTTGTAAATTGGGACTTCGTTCG
GGGTTTGTTGCAAGTCCAGCTATCTATTTCACGGACCGATCATGTGCCCG
TATGTTATGACCCTCGGTACGTTGTCACTCCCCGTTTATTGCCACGCCCC
CTGTCCTCCCCTCTGTGTTTGCCATCGGGATTGGATTTCGTCGCTTGGCA
ACGACGTTGTAAAACAAGCCAATTTTCTTCGTGAACTCGGCAACCAGGTT
ACCTTTTTCTTTTTTTTACCTCTGTTTTTTTGTGGCGGTAACCATAGTGG
TGGTCGAGTTGTGCGGGGTGGAGAATGCTCACTCCGCGCAAGGGGGATGA
TCGCACCACGTTGAGTTAAAATGGCGAAGCATCCGCGAGGCAGTTACGCA
GTGCTTATAATTGTCTCTGGAAGTGAAAGCACCAGAAAGTAAATTAAGTC
ATACGCAGCTGTCATCCGTACGCAAGGAAGTAAGCACAAGATGCCGAACA
CCCTTAGCAGGATGCAGCGCACCCTTCATGCGACTCGCCGAATATCTCAC
GGCGCTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCG
TGCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCAATGGTCTAACGACTAC
GGCATGCACGACTATGAGTACCCCCCCCCCCCCTGTAGTGCGGCAGCAAC
CTGGACGTTATCGCCTGGGCAATTTTTGATACCACACACCCCGTAGAACA
TCTGTCACACTCGATTCTATTTTCAAGCCCCAACTTATTATCACCGGGGT
GTGGTTTCTTGTGTCGTTTACGGTTAGACGTACGTTCGTGACGGAGATGT
GCTGAACAGTTTCATGTTGCACGGTGCAAGAAATGGGGTCATTCCTTTTT
GGTGCTTCATGCTCAAGTTTATTTTCGCTCTGCACCCTCGTATTACGTTA
TGTGGTTTTCCATGGGGCAGGCAACTCATGCACCATTGCCTCATCGTTCG
CTGCTCCTATGATTTGTCTTTCGTTTCTTTCTTTCGTTCAGCGATGGCTT
GGGAAGAGTTCTCCGACTTTGTTCGGCGCACGGTCGAGCGGAACTTGAAC
GGAGCGCAGTTCGACTTCGACACTCGGCAGTGGTCGAGCAGCATTCGCAA
GTGGTGGAGCAGGGCCGTGGAGATGGACGTGCAAGCCAAAGCCGTAAGTC
TGCAGCTGCTTTCATGTACCATTGTATTCTTTTTCTTGATGCGGGCTGCG
CCCGCAGTCACTGTGGTAGCGTTTTCAGGCAGTCTGCCATGAACTCCATG
GGCCCGCAATAGTCTACTGGAAGTGCCTGGCGCCCTGAGTGTATGCACGC
GTGGAACGCGCCATATGTGCATGAATCAGTCATATCGGTCTTTGAGGGAA
CGGGAGACAAAGTATTTCCGCCCAATCGTGTCGAGGAAACTGACCCTTTC
CTCCGCACTCACCAACCACCCGCGCTGTTCTGCCGGAATTCGTACCATGG
TACACGGACAGGACCTTTTCCGGCTTTACGATAGCAGCGTAGGGCAGAGG
GACGCCTGGGGAAACCAGGCCTTGAAAGTGGACGCAAGGGTTGAGGACGA
ATGGGACAGCATCTACGTAGATTGCCAAGATGGCGCCGACGTAGATTTTC
AGGACTGGTCATTCGACAGCAGTATCAGCTGTGGGGTCGAGGGGGCGGCG
ACAGGGAGTGACATGACGGATTCGAGATTATCAGGACCATCATCAAAAGC
TTTGCCGTCATCGTTGCGGAAGGAGGGGGGTGGTTGGGGCGCGAGTCCTG
GAAGTGCAAGCACTGGTGGCTCTCGCTCGGCGCTCATGGCTGCCATGGAC
GCGTTCCAAGAGGAGGAGGAAGCGGAGGAGGGGGAAGAAGACGGGACGGG
CAGCGAGGGCTTCGATGATGAGGAGATTATCGACTGTGCGATCAGGGGAC
GGTGGACTTTCACAAACAACGATGACCCGGTGAGAGGACGTTAATCACCT
TTGTCGTTGTTACCGTTGCAGAGTGAACGAACGGTCTTGCGGTTGTTACC
GTTGAACGTCTTCGTCGGGCCACTTGCAGGAGATTGTCCGAAAGTGCTTG
GGGAAGACGTATTTTTTATCATTGGTAGACACCAAACACCGTAGCATTTT
TTGCCTGGAGTTTGACCAGTTGTCAGCTGCTGTCAACTGCTCTGGTGGAT
ATGGAGGACCCAAAACTATAACAAGGATTTACATCCAGCACAAAACAATT
ACAATGTCACCGTTAATAGGTCGAAGCTCAGGTCAAGTTGGGCATATAGT
ACCTCTGCTTCAATCCCGCCGGGTACGCTTTGTCACCCCATGAAGACTCA
CGAGCAGAGCTATTCAGATTATTCCTCTCGCCAATCTCGCTCGAACGATG
GGCGCCGTGTACTGCGTGATTGTAAGGCTCCAGACCCCCACTTGGAGAAT
ACCCCCACTTATTCTCCCCCTCTCGTCCCCGTCACCTTCCCGCCACGGTG
CTTGTTGTCGACACGCTCCCCGTCTTATGCAGCCCCACTTTTCTCCACAA
TAGTGCCGGTGGCACCGAAGAGGATCTCTTGATCTCTTCGATGTGCGCGG
CGGCCCGCGTAGACAAAAGGGCTCAACGCCGCGTGTACATAACATCGGGA
AGGGGGGAGGGTACCATGAATTGTAGCGAGATGTGAAAATATGTGGAAAA
TGTATCGTGCTTTTGAGTACCCCGTGGGAGGTAGACCACGGCTATGCGTG
GATGCCACATTTGTCTGTGGATGCATGTTTATTACGGGGGTGTTTCGAAG
CAGACGAAAGTGCCGCACCGTGCACAGGTTCAAGAGAGACGAGGGGAAGT
GCGTGTCTGTGCATGCGATGCCGTCCTTCTGGCTGCCCGAGTAGTGTGAG
GGGTGATTCTGAAAGTGTATTCTGGTCCCATGCATATTTACTTCTACTTG
AAGTATGATACATACGGTAGTTCGTTGAAAGTGGGGTGCGCAAAAGGAGT
ACTATTGTAAGGTTGCGAGCGTGGGGGAGCATGCATGGAGTGGTTAGGGG
GTTGTCACACGTCCCTTTCGTGTACAATTTGTTTTTCCTTACTCTCCTAA
ATGTTGGCGGTTGGGTCCCAACCAAACGAGTTGTGTTTTCAGTCCCTCAT
CGTTTTGTCCGTTGAGCGCTGCCATCCGCTTGGAAGGCTCTTTCTTGAGG
ATGTAGGTTGTTTCTCCGTGTACAGGCATGCGGGCAATCCTGTTTTGTGT
GTCTACCTCACCTTGAGGCATCATGTTGGTATTGGAGCGGTGTGTATTTG
TGAGGAATGTATTGATAAGAGAAATGGTTTTCGGAAGGACGGACAAATAG
TGCCGACAGAGGCTTGCCAGCTTTTTTCACGGTCGACAAACATCAAGAGA
GAGAGTAGTTGCATCGTTGGTTGGACACGGTTGCCCTTATTGCGTTGCCG
TCGGAGAGCAGGCGGAGGTCATGTGGATAAAACGTGTCAAAACATCCATC
CCTGCTGCATGCTACTGAAGGAAACGCCTCGCCCAAGAGCGAAAATGCAC
GTGTAGATAACACGGCAGCATCCGCCGCCATTGTTT

Coding sequence (CDS) from alignment at Scaffold_323:29137..34372+

>EsuBft889_9a-0001 ID=EsuBft889_9a-0001|Name=EsuBft889_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1005bp|location=Sequence derived from alignment at Scaffold_323:29137..34372+ (Ectocarpus subulatus male Bft15b)
ATGAGAACGTGCTTGCTGTCGGCGGCGCTGATGTTCCTAGGAGGAGCACA
AGGTTTCATCAACAGCCTGCCGAGATTACCCACTCGTGACATCACTACCA
CGCCCGGGCGATGTAGAGTACCACGACTGGCCCTGACACCACCCCGAAAG
CCCAATACTGGGGCGGGAGCCGGGTCTGCTGCTGCCGGGGGCGATGACAA
TGGCGGGGCGAATGATATGTTGAAATCGACCAGCGGGATCGCCAGAGCGC
CTCTCCGGATAACTCCCAACTTTCACCCCCAGGAGAAGCGGAGGCCAAAG
ACCTTTGTAGATAAGGACATCACCTATGGGGCGTTCTTGACGGAAGAGAG
CTTTGATATCGCCGCGATGGCTTGGGAAGAGTTCTCCGACTTTGTTCGGC
GCACGGTCGAGCGGAACTTGAACGGAGCGCAGTTCGACTTCGACACTCGG
CAGTGGTCGAGCAGCATTCGCAAGTGGTGGAGCAGGGCCGTGGAGATGGA
CGTGCAAGCCAAAGCCGACCTTTTCCGGCTTTACGATAGCAGCGTAGGGC
AGAGGGACGCCTGGGGAAACCAGGCCTTGAAAGTGGACGCAAGGGTTGAG
GACGAATGGGACAGCATCTACGTAGATTGCCAAGATGGCGCCGACGTAGA
TTTTCAGGACTGGTCATTCGACAGCAGTATCAGCTGTGGGGTCGAGGGGG
CGGCGACAGGGAGTGACATGACGGATTCGAGATTATCAGGACCATCATCA
AAAGCTTTGCCGTCATCGTTGCGGAAGGAGGGGGGTGGTTGGGGCGCGAG
TCCTGGAAGTGCAAGCACTGGTGGCTCTCGCTCGGCGCTCATGGCTGCCA
TGGACGCGTTCCAAGAGGAGGAGGAAGCGGAGGAGGGGGAAGAAGACGGG
ACGGGCAGCGAGGGCTTCGATGATGAGGAGATTATCGACTGTGCGATCAG
GGGACGGTGGACTTTCACAAACAACGATGACCCGCCCCACTTTTCTCCAC
AATAG