EsuBft889_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft889_6a-0001
Unique Name	EsuBft889_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_323	contig	Scaffold_323:58276..64355 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft889_6
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	TMhelix
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	TRANSMEMBRANE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	180
Hectar predicted targeting category	signal anchor
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-04_002430.1
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft889_6a	EsuBft889_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_323 58276..64355 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft889_6a-0001	EsuBft889_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_323 59347..64280 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft889_6a-0001-exon	agat-exon-23553	Ectocarpus subulatus male Bft15b	exon	Scaffold_323 58276..59556 -
EsuBft889_6a-0001-exon	EsuBft889_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_323 60869..61073 -
EsuBft889_6a-0001-exon	agat-exon-23554	Ectocarpus subulatus male Bft15b	exon	Scaffold_323 64039..64355 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft889_6a-0001-exon	agat-three_prime_utr-22725	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_323 58276..59346 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft889_6a-0001-cds	EsuBft889_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_323 59347..59556 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft889_6a-0001-exon	agat-five_prime_utr-14706	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_323 64281..64355 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_323:58276..64355-
coding sequence from alignment at Scaffold_323:58276..64355-

spliced messenger RNA

>EsuBft889_6a-0001 ID=EsuBft889_6a-0001|Name=EsuBft889_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1803bp|location=Sequence derived from alignment at Scaffold_323:58276..64355- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCCGCCGCGGCTCTGGGGTCACCTTAGTGTTAGTCTTGCTCGCTGCCGA
ACAACGAGACATACACCGCGTAATCATGAGGAAGCGAGGGGTAGACCTGC
CTATGGCAAGCGGAGGAAGATCTCCGACCCCGCCACGGCGTCAGTTGAAC
ATGCCGGATGCCACTCCAGCAAATGTTTTCTCCTTCACATGGGTGTTGTG
CGGCTTTGCTTTGATCTGCATCGGGTACGGCCATTGCTCTCGGCACTCGG
AGCAATCACGACTGTACTGCGCAGAGGATGTGTGCCGGTTCTCCAGAGAC
TCGATGGAAAACCGAAGTCGTAAGGAGTTCCAATTTCTGCGAGAGAGCCT
AGTGAAGGCGGAGGTTGCCCACCTGGACAAGAATGGGGAGCTAGTGAGGG
GGAAACGGGCGAGTCGGCGGCAAAAGAGGGGGATGGCCCAGACGTACACC
GTCACCTGGAAGGACGCGGAGACGCAGGACGAGACCACACTCCCCATCGC
TAGCTACGGCCTCGGTCGAAAGGTGCCGCGGGCAAAGGTTGCCCGAATCA
TGCAGTACGTGCAGCGGCAGATCGACGACCTCGACGTGAAGGAGGGGCGC
TGGTTCACTGGCATAGGCATCGTGTGTTTCGTTTTCGGGGGTGTTCTGAT
CCTGCTTAGGGTGGTTGTGGGGTCCATCTTTCCCCAACCCCCGTCAAGGC
GAGACTTATCTCGGAGACAGCTGTTCAAATAGGAGGCGGCAAGGTCTTCG
GGATGTTCGAGGCATGGTGATCTGTTTCTTCTATACGCGGCGCAGGCAAG
ATGTTACGGTATTTGCTTGCTGCCGGTGGTGGCTATCTGTCGTGTGGATT
CGTCGTTGAGGAGGCATCCTTTTAGTTGAGAGGCACCACCGATAACTTTT
TTGAAACTGTGTGGGGATGACTAATTTGACATGTGCGTGTGGGATTGTAC
GTGTGGTTGTTGGTTATGCGTATAGTAGGCATTTGGGTATGGGGGGGGGG
GTCCTTCCCGCTTGGTGGTCTTGCTTTCAACTGATTTAGCATGGCTGGGA
AATAATGTTCGGTCTGTGGTTTCGACAACCGGGATTGACTGCACAAAGTC
CTGGTGAAGTCCGCTAGTTGGCCAGGACCAGTTTACACTATTGAGGGGAT
GACCCTTTCCCCTTTTGCAGATGGTCGTGGTTTCTCTACTGGCGTTTTCT
AGGAGAATCTTTGTTGAACCTCTCAATCAGACAGATGGTGTCTGTTATTT
TGCTTCGAGGGTGGCCGCATGAGGTGCGCTCATAAATGGAGCGAGACGCC
TGGGCCACTTGTAACAATATGAAGCCTAGGGTAACGTGGTGATGCCTGAA
AAGGCTCATCGGCATATGACATGTATGAGGTCGCTTCTGGTTGGTGAGAA
TGTTGATGTTTGTGGGTATGATATGAGCTATTCTGGGCAGCGCCAAAGGG
CGGACGCCACTGCCGTCTGTTTGTGTTTTGGTTTTATTGGTGTTGTGTTT
TACTACGCATCGTGGGGCTTTTTTGTCATTGACCGTTGCCCCGGCGCGAT
GTTCTCGCCGCAACGAGGTTTATTTGACAGTGAGTGGTGGAATAGTGGTG
GTCGTGGCTACCCATTGATTTACGGCCGTGTAGCCCTCGAGTCGTGGTAG
TTGCCCCATGAATCGTATCTGTAATTGTATGCGGTAACATGTACGGTTGT
CCATCTAACGCGCCTAGTATATGTAATGAATGGAGGCACTTTTTTTGGAG
GGCCATCAACACGGTGAACCACTCTTAACCAAACCCAAACCCCCTGGGAG
ACC

protein sequence of EsuBft889_6a-0001

>EsuBft889_6 ID=EsuBft889_6|Name=EsuBft889_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=218bp
MRKRGVDLPMASGGRSPTPPRRQLNMPDATPANVFSFTWVLCGFALICIG
YGHCSRHSEQSRLYCAEDVCRFSRDSMENRSRKEFQFLRESLVKAEVAHL
DKNGELVRGKRASRRQKRGMAQTYTVTWKDAETQDETTLPIASYGLGRKV
PRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGGVLILLRVVVGS
IFPQPPSRRDLSRRQLFK

mRNA from alignment at Scaffold_323:58276..64355-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft889_6a-0001 ID=EsuBft889_6a-0001|Name=EsuBft889_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6080bp|location=Sequence derived from alignment at Scaffold_323:58276..64355- (Ectocarpus subulatus male Bft15b)
TGCCGCCGCGGCTCTGGGGTCACCTTAGTGTTAGTCTTGCTCGCTGCCGA
ACAACGAGACATACACCGCGTAATCATGAGGAAGCGAGGGGTAGACCTGC
CTATGGCAAGCGGAGGAAGATCTCCGACCCCGCCACGGCGTCAGTTGAAC
ATGCCGGATGCCACTCCAGCAAATGTTTTCTCCTTCACATGGGTGTTGTG
CGGCTTTGCTTTGATCTGCATCGGGTACGGCCATTGCTCTCGGCACTCGG
AGCAATCACGACTGTACTGCGCAGAGGATGTGTGCCGGTTCTCCAGAGAC
TCGATGGAAAACCGAAGGTGATAATAGCTGTCTTCAGCTTCCGGTTGATA
TGATTGTGGTTTTTGGGCAACCACAAGTAGCGAGGCCACCGACGTCCACA
AAGCTGTGTCGGCTGTTGTTATCTGTTGCCAACGCCGCCCTGACCAGCAG
TGTGTTTTGTTTCGTCCCACCGCCACCACATCAAGGGTTTCGTTGCCTAC
ATACTATGCACGATTCCCTGCCCTCATTTGTAAACAGAAACCACCCGTTC
GCATGTAGGTTCAATGTATCCAAGCTACGATCACACGTCGAATGTGAGCT
TGAGGTATTAACTGCTGTAGACCACTACCATTTCGTACAAACGAGTTCAG
TACAACGCGAGTCCAACCTCTGATCCGGCTTGACAGAACGTTGGACCCCC
TCGGTTGCAATAGCGCTCCACGGCAGAGTATCGTCATCCGTGGTGAGATG
AGATGTTTAGGGAGACACAGATAGAAGATCTACGGTAGTCTACATGCCTG
CCTCGATTATTGAATTCTGGTCCTCTTGGAGTGTCAGTGTTTCAGCGACG
AACGAATCGCCGATAGACCACTTCTACCAATACATACATGCATGCAGCTC
CTCCTGGGGGGGGAGCGCTCACCGCCCAGCACCACCGAACATTCACATCG
ATGAGAGTGTAACAGACTATTCATGTGTATAGCACCATCAAAGCTCGTAT
CATCAGAGGCAGCAACGGCCAGGGGTACTCGTGGCGCAAGAACCATACAG
ATTATTCTACACTGAAGCGGATACAGCAGTCAGTCTAGAGTGGCTCGGAA
CAAGCCAATTTGACCATCTCAAATCCAACTTTCTCGGTGAAGATACGCTG
GGGAGTAGACTACAACAGAGTGTCGATCTCCTCTTCGGCGACCCAGGAAA
CGCCTGGCTTGAGCAATTTCCACATCCTTATTTTTCAGTACAGTACGAGT
ATGCCATCGAGAAAATGCGTCTGCACACGTTGCGCGCATGCGTACAATGG
GAGTAGCTCCAGTAAGGGTTTGTGACCCTTGTGATGCAGGTTCACAGGTT
AGCGGTTCGCGCTAAGAGTTGGAGGTGGAATAGTTTTTTGTGGTGGTTGC
ACAAAAGTACCTACAGTAGGCTCGTGCGTCTGTTACAGAAGGACGGGGGG
TGGTCCATCATCACCAGCTAGAGAGGGGGGGGTATCCATCATTATTCGCT
AGTGGGGGGGGGTGGCGTCCATCATCAGCTAGCGAGGGGGGTGGTATCCA
TCGTCAGCCGTGAGGGGGGGGTGCTATCCATCGTCATCAGCTAGCGAGGA
AAAAAAAAACGTTGAAAAATTCCCCGGCTGGTGGTGCTGCTGCTGATTGT
TTGAACAGGACGCTTCCGCCACCGCTTTAGATAACAGCAACAGCAGCAGC
AGCAGAGGCGACACACCCTCTCGCCCACAATGAGTGTAGAGAGGTGCACA
GCACAGCAGTGGTACTACATCGTCTAGGAACGAGCGTGATGTGTTACTGG
TCCCGTGCTGTGATGTATGTGTGCCTCTCTCCAGAGCAGAGTCAGAGGCC
GCTCCCTCCCGCCGCGTCGCAACACAATACGAACAACCAACCGATGGACC
CACAGAGACCCAATCAATATCTCTCCTCTCGCTTCCTCCGCCGAAAGCTA
GCAGCAGCAGTAGTATAGGGCACACCCTGCTCCCGTCCCGCTCTCGCTGT
GTGGTGTGTGCAACACACGCTGGTTGGTGGGACTCCCTCTCTCTCCAGAG
AAAAGGCGAAAAGGCCGGCAGCGTTGAACAACAACAATCAACGGAGACAA
CAACAACAACATCATCAGCGATGAACCCCAGACCAACCAAACGTTCCCCG
CTTCCTCCGCCGTCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAAATGACGCCCCCCG
GCCGAGAAGTCGGGGATGCGTCCATGTGACATATATATTTACACAAACGG
TGTGCTATCTCGAGACACCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCTTGTTGTGCGCAAGTTTTAGTTTGCAATTTG
GTGCCGAGATGGTGAAATGGGCTCGAGTCTGCTGGGTTATATAGGGCGCG
CAGACACCAGACAGACAGACAGACAGACATCAGACAGCCATCGCGGCTTT
TTCACGCCCCTGGGCATGAAAATTATTCTTTTTCTCGTGCGCACATACAT
CCACACACGATCCCTCTAAACAGCTTTTTTTTTGCAAAACAAAAAGCGTA
CCCCTTTACGGGCCACTCTTTTCTCAAAAAAAAAACTATTATAAACCTGT
TATTTCTTCGAGTTTGGTGAGCTGCATTGACGTACGAAGTACGCAATAAC
GATTTTGGATGCTGTTGTTGTTGTGGCGGCAAGAATGTCGAGCGCTTCAA
GCACGTCTTGTTAATGGCGAGACATGCACACACACGGCCTCAGGCCTCCA
AGTTGACAGCGGCGAGATGAGTTAACTTAAACCTCCAGTCACGATCGTGT
TCTTCCAGCAGTACCCTCCTCTCTCCTTCCTCCCGCATGCATCTCTTGAC
TCGACGCCGCCCTCTCCCAACGAAAAAAACAGTCGTAAGGAGTTCCAATT
TCTGCGAGAGAGCCTAGTGAAGGCGGAGGTTGCCCACCTGGACAAGAATG
GGGAGCTAGTGAGGGGGAAACGGGCGAGTCGGCGGCAAAAGAGGGGGATG
GCCCAGACGTACACCGTCACCTGGAAGGACGCGGAGACGCAGGACGAGAC
CACACTCCCCATCGCTAGCTACGGCCTCGGTCGAAAGGTGCGTGTGGTGG
GGCATTGCTGGCGGGGGGGGTTGGTGTGTGCGTTGACGTCCAAGTGATGG
AGAGGATGGCGAACAAGTAGCAGTTTAAATTGAGCCCTGTTTGTAGCGTT
GTTGAAGCAAGGTGAGAATACCCTTTCTCTGTGACGAATAAGGGTCCCTG
AAGCGGTGATCAACCGTTCACCAGCGGAGATTTTTGTCTTTTCTTGCAAT
ATGGCGAGGAAGTGCCAAGCGCAGCCGATAGGCTCGGCTTAGCTATAGCG
GTAGTTCAAGAAAGGTGGAAGGTGAGAGAGTGAGGAGCGTGGGGCGCTTT
TGCCGCCATCTCCCCATCTCCGAGATTCACATGAAAATAGTGACGGTACA
GTATTCTGTGAATCTTTACTGGCAAATGTCTTCGGACGGTCGGACATTGT
CCATGTAGTCTGACGATCTTTGCTGGTCGCATGTGCATCATTTCCTCGAG
GAAGATACTTATATCCTGGTTTCCACATTGCCCCCCTTTTTGTTCGCCGA
AAATCCATGTCGATTGAAATAGTCGGCGCTCATTCCACCCGGAATGAGGG
AACGGTACAAGTGGAGTTGGGATATGTATTTCCTAGTAATATCCTGGTTT
CCACAACGGTAGCCCAATCCATTTGTCTCAGAGGAAAATAATGGCATTCT
GAAACTTGGGTCAACAAAGAACGCCAGCAAGAGCGATGCCCTCACGCTGA
CTAGCCAATTTCAAGATGCGGTTTGTTTAGTAGGTCAACGTCATGGCACA
CCATGGTGTGCAGGCATGCCTACAGAAAACAGCAAGGCTTGAGCGGTGTT
GTGCACGCCTAGATGTTGTGGGAGTGGCACTGCCGTAAACACGCGAATTT
CCCGAATCCGCTCGTCAAAGCGAGATTGAAGCCATCAACAGGTGGACTCG
TCGCGTGCATGTATCACAAGACATTTGCTGACCATGGTGTACGCCCTTGG
GCCTGTTTGGTCGGATTATTTTGTTTGCGTCGTGACCGTACACTTTGTCG
CCATTGCGAATACTTGGAGTGATTCCTCCCTCACGTGTGGGCAGTTTTGC
TGGATCGTATGCTAGACAGGATAGATATGTATGTGAATGATTTATCTTGG
CTTCATTCGTGAGGGTTCAGAGGTTCGTGGGCAACAAAGACAGCGTCCCA
TTCCCACGCGACCGTTGACGAGAGCACCAAGGTCGCCATCATACTGCTTT
AGTCGCACAGCAGGCGACACTGCTCCATTCCAACCCCAATGCTATCTTCT
TTCTGCATGTTCACTTGTCGTTCCCCCCGTGGATCTTGATGGTGACCAGG
TGCCGCGGGCAAAGGTTGCCCGAATCATGCAGTACGTGCAGCGGCAGATC
GACGACCTCGACGTGAAGGAGGGGCGCTGGTTCACTGGCATAGGCATCGT
GTGTTTCGTTTTCGGGGGTGTTCTGATCCTGCTTAGGGTGGTTGTGGGGT
CCATCTTTCCCCAACCCCCGTCAAGGCGAGACTTATCTCGGAGACAGCTG
TTCAAATAGGAGGCGGCAAGGTCTTCGGGATGTTCGAGGCATGGTGATCT
GTTTCTTCTATACGCGGCGCAGGCAAGATGTTACGGTATTTGCTTGCTGC
CGGTGGTGGCTATCTGTCGTGTGGATTCGTCGTTGAGGAGGCATCCTTTT
AGTTGAGAGGCACCACCGATAACTTTTTTGAAACTGTGTGGGGATGACTA
ATTTGACATGTGCGTGTGGGATTGTACGTGTGGTTGTTGGTTATGCGTAT
AGTAGGCATTTGGGTATGGGGGGGGGGGTCCTTCCCGCTTGGTGGTCTTG
CTTTCAACTGATTTAGCATGGCTGGGAAATAATGTTCGGTCTGTGGTTTC
GACAACCGGGATTGACTGCACAAAGTCCTGGTGAAGTCCGCTAGTTGGCC
AGGACCAGTTTACACTATTGAGGGGATGACCCTTTCCCCTTTTGCAGATG
GTCGTGGTTTCTCTACTGGCGTTTTCTAGGAGAATCTTTGTTGAACCTCT
CAATCAGACAGATGGTGTCTGTTATTTTGCTTCGAGGGTGGCCGCATGAG
GTGCGCTCATAAATGGAGCGAGACGCCTGGGCCACTTGTAACAATATGAA
GCCTAGGGTAACGTGGTGATGCCTGAAAAGGCTCATCGGCATATGACATG
TATGAGGTCGCTTCTGGTTGGTGAGAATGTTGATGTTTGTGGGTATGATA
TGAGCTATTCTGGGCAGCGCCAAAGGGCGGACGCCACTGCCGTCTGTTTG
TGTTTTGGTTTTATTGGTGTTGTGTTTTACTACGCATCGTGGGGCTTTTT
TGTCATTGACCGTTGCCCCGGCGCGATGTTCTCGCCGCAACGAGGTTTAT
TTGACAGTGAGTGGTGGAATAGTGGTGGTCGTGGCTACCCATTGATTTAC
GGCCGTGTAGCCCTCGAGTCGTGGTAGTTGCCCCATGAATCGTATCTGTA
ATTGTATGCGGTAACATGTACGGTTGTCCATCTAACGCGCCTAGTATATG
TAATGAATGGAGGCACTTTTTTTGGAGGGCCATCAACACGGTGAACCACT
CTTAACCAAACCCAAACCCCCTGGGAGACC

Coding sequence (CDS) from alignment at Scaffold_323:58276..64355-

>EsuBft889_6a-0001 ID=EsuBft889_6a-0001|Name=EsuBft889_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=657bp|location=Sequence derived from alignment at Scaffold_323:58276..64355- (Ectocarpus subulatus male Bft15b)
ATGAGGAAGCGAGGGGTAGACCTGCCTATGGCAAGCGGAGGAAGATCTCC
GACCCCGCCACGGCGTCAGTTGAACATGCCGGATGCCACTCCAGCAAATG
TTTTCTCCTTCACATGGGTGTTGTGCGGCTTTGCTTTGATCTGCATCGGG
TACGGCCATTGCTCTCGGCACTCGGAGCAATCACGACTGTACTGCGCAGA
GGATGTGTGCCGGTTCTCCAGAGACTCGATGGAAAACCGAAGTCGTAAGG
AGTTCCAATTTCTGCGAGAGAGCCTAGTGAAGGCGGAGGTTGCCCACCTG
GACAAGAATGGGGAGCTAGTGAGGGGGAAACGGGCGAGTCGGCGGCAAAA
GAGGGGGATGGCCCAGACGTACACCGTCACCTGGAAGGACGCGGAGACGC
AGGACGAGACCACACTCCCCATCGCTAGCTACGGCCTCGGTCGAAAGGTG
CCGCGGGCAAAGGTTGCCCGAATCATGCAGTACGTGCAGCGGCAGATCGA
CGACCTCGACGTGAAGGAGGGGCGCTGGTTCACTGGCATAGGCATCGTGT
GTTTCGTTTTCGGGGGTGTTCTGATCCTGCTTAGGGTGGTTGTGGGGTCC
ATCTTTCCCCAACCCCCGTCAAGGCGAGACTTATCTCGGAGACAGCTGTT
CAAATAG