EsuBft889_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft889_5a-0001
Unique Name	EsuBft889_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_323	contig	Scaffold_323:64480..67407 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft889_5
Protein domains	IPR000949
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	264
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-04_002440.1
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft889_5a	EsuBft889_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_323 64480..67407 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft889_5a-0001-exon	agat-exon-23552	Ectocarpus subulatus male Bft15b	exon	Scaffold_323 64480..64632 +
EsuBft889_5a-0001-exon	EsuBft889_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_323 64915..67407 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft889_5a-0001-exon	agat-five_prime_utr-14705	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_323 64480..64580 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft889_5a-0001-cds	EsuBft889_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_323 64581..64632 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft889_5a-0001-exon	agat-three_prime_utr-22724	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_323 65091..67407 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft889_5a-0001	EsuBft889_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_323 64581..65090 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_323:64480..67407+
coding sequence from alignment at Scaffold_323:64480..67407+

spliced messenger RNA

>EsuBft889_5a-0001 ID=EsuBft889_5a-0001|Name=EsuBft889_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2646bp|location=Sequence derived from alignment at Scaffold_323:64480..67407+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCCGCGCCGCAACGCACCCTGCGGCAACCTCTCTCACTTCTCACGGCCT
CTCGCTCTCCCACGCGCGTGCGAAGGATTTCACCAACGGTAACTGGAAGT
CATGGAAGGAATGGATGTTTCCGAGGAACGGCCTCCGGCTAGGGCAAAGC
AATACAAGCGTTACCTGGCGCCGCACGCGGATGCTCACATTAACGTTGGC
CCGGAGTATCAGGCGGCCATCCCGGCGCTCGAGCCGAGTGTTGCGTTAAT
TCCGCCAACACCACCAAGATTAAGCGAACAAGGAACCGCGGAGGCCGCCG
CCGCCGCCTCCTCCGAAATGGACGAATGACTCTCCGCGGTAACGCAAGAT
GCAGAGGGTGGGTGGATACGTGTGAAGGCCACACGCACGCTTTGAGCTTC
TCGGTACGAGTGTATTGATGCGCGCAAGAGAGGGTAAGTTTATCCGAGGG
TCGTGAAACCATAGCGGTAGAAAGTGGGGCCTGTCACAGGTTATCCAACC
TGGAACAGTGACGCCATGCCGTGCGTCGGTGGGGAGGGATCGGCGTACAC
TGGCAGTGCTAACTCAGCCGGTGTTGCTTGTGGAGCCACCAATCTGAACC
ACGGCGGTCAATTGCCGGGGGGTCTGCTCAAGAGTGTTATTGTTCTGTTT
CGAAGGCTTCTTTTAGGTGTGCTCGCCGATTTGGTGTAGATGCGTGCACG
TCGGTGGGGCCCGCATCGTGTTGTCTGGATTCTGGAGTAGACCTGAGATG
GAAGCGTGGGCAACATGCACCGTCCGTCCGTGAGAGGCCAACTGACCCTA
GCACCGTTGTCAGTACTCCATGTTGTCCGATATCCTCGGCCATGAGTTCC
CTCCCGAGTTTCGCTGGTTCTCAGAGTAGATGCCGAAGGATAAGTTATGT
GGTATGGTAGTGATGTACTTCCTCGTTCCCTTTGTGACACCTTGTAGAGA
GTGCCGGCGTGTAAAGGGCATGCCGCTATTGTAGCAGTGAGAGCTATGTA
CGCGTACGTTGTTTTTGTGCGTTTGCAGTACGGAGCTGCGTGACTGCTGT
TTGTTCCTGCCTGCTTCATCTTAGAACAAAAGATCACTTGAACATTTGGT
TGTCGGTATCGTGCTGGCGTGGGCTGTTGAGTTTTTCAGATGGGCAGCAT
GGGCGGGTCTCTCCGATTTTTTTTGTGTTTTTCGTGAACAGCTGTATAGA
CAAAAGAGGTGTCTTGTTTGGGATGTGTAGGTTCGTGGGTTGGGTGTAGA
CTAGACATGGACGTTATGCAACACCGTTGGCGCCAACGTAGTGTTCTGCA
ACGAGCGAACTCTTATTTTCGAGTTGTCTATTGCATGGCGTGGTTACCCT
TGTCGTCAAGTTCGTCGCTGGACGTTGCTTTCGTGGTGTTGTCCCTGATC
AAAGCTTGTGTGGTCGGGTTTGCGCTGAAAGTTGCGGTGGGGGTTGCGGA
GTGGACGATAGGCTGTACCGTCAGTGTCAATACATTCTGCAGAAATTTTT
CCGCAAGCGGACACGCGTTTCGGAGTTTGTACGAGCCAAATGAAGTTGAA
ACCCTGTACGAAGATGGATCTATCACCGGAGAACCACGAATAAAATCGAC
AAATAGTTGGGGCAGTAAAAGCGCATGGGAACGGACTCTGCGAAGTCGAT
CGCTGCGCTGGGTGGAATGGGTGTCAAGAGCTTTCGCAACTCGTGGGAAG
CAGAGACGAGGCCCTTTTGGTTTCTTGGATCTTGAGGCTCTTGTATGAGC
GGGAGCGGGAGGCATCTGCCAGCTTGGCTCCCAACAAGAATTCACAGTGT
TTCGTGTTCTCTCCCAAGCAGTCATGGTCCTGAAGCGCTTTTGCTCGAGC
AAACGCGGCTGTCACGCTGTCCGGCCATGTTCGCATTTTCATTTTACGCC
AAAGAATAGCGAGCTTGAGTGCAGCGGGTATTTGTAGACACCAATGGTTT
CCCCCGCCAGAATGGAGCGTCTACGCTGCTTTCAAGTTCTCGCCAAAATC
GTCAGTAGTAGTAGCAGCAGCAGCAGTCAATTACACATGGCACATGTAAT
GTTCTGGATGGAAAAAAATGTATTCACAAAAGAATCCCACGCTCTTCTGC
TTGGTAATGCATAAAACACACAATTGGCGGCAATAACGTCCCGAGAGCTC
TACTTTTTTCGACGTCAAATTGCCAAACTGCCAGACGCTGAGATTCCCAA
GGCTGGTCACAACGGGTTCAAACGACCAAGCTCGGCATCAACGTGCCCCA
TCAATCATTTGTGGAAACAACCGTCTTCTACGACAGAGCAGCGCGCTTAG
CCCGAACACTTAACTGTCGCTGAAAAATCCGTCTCTCTACAGCATGCGGC
CAGGCTACCACCGCTGTCGGTACAAATTAGACTGCAACGTGTTGGCAAAA
ATAACAAATACGAAAACGCCTGCCAAGCAAGACACGGAGAGTACATGCCA
GTGGTCGGTTCGCCTCAAACCAATTCTACCCCGCGGAGACGCAATACAAC
ACGTACACCATGCGATCCCAACGGCTGTTGTAGAATCCTCGTTCCCTGGT
AAGGTGCGCAAGGCCTTTCTCCCGCGTCACCGCTCACCCCAACAGAAACA
TCACCGCTGGAATGGTGATGCCCCCCTACCCCCCCCAAAACCTCCG

protein sequence of EsuBft889_5a-0001

>EsuBft889_5 ID=EsuBft889_5|Name=EsuBft889_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=75bp
MEGMDVSEERPPARAKQYKRYLAPHADAHINVGPEYQAAIPALEPSVALI
PPTPPRLSEQGTAEAAAAASSEMDE

mRNA from alignment at Scaffold_323:64480..67407+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft889_5a-0001 ID=EsuBft889_5a-0001|Name=EsuBft889_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2928bp|location=Sequence derived from alignment at Scaffold_323:64480..67407+ (Ectocarpus subulatus male Bft15b)
TGCCGCGCCGCAACGCACCCTGCGGCAACCTCTCTCACTTCTCACGGCCT
CTCGCTCTCCCACGCGCGTGCGAAGGATTTCACCAACGGTAACTGGAAGT
CATGGAAGGAATGGATGTTTCCGAGGAACGGCCTCCGGCTAGGGCAAAGC
AATGTGAGTCATGTTCGCTCTCGTTCTACACATGTTGAGTTGGGAAGAAG
CATGCGGCTTCACACTTCATACACACCTGCGTATGTTCAACCTTTGTGTG
TTGTCACCAAATATTTCCGACAGCGTCCCAACGCCGGAGACAATTCCTTA
CCCCGCTTGCCCTCCGTTGTTCGCGCTCCGACCCCGGCGATCCTGTGCCA
GATGGCGCAGAAATTAGCAGCTGCAAGACTTGATACGCTTCCTACTTGAC
CAAATGTCCGTCCGTGTTGTCCGTTGTTGCTCCAGACAAGCGTTACCTGG
CGCCGCACGCGGATGCTCACATTAACGTTGGCCCGGAGTATCAGGCGGCC
ATCCCGGCGCTCGAGCCGAGTGTTGCGTTAATTCCGCCAACACCACCAAG
ATTAAGCGAACAAGGAACCGCGGAGGCCGCCGCCGCCGCCTCCTCCGAAA
TGGACGAATGACTCTCCGCGGTAACGCAAGATGCAGAGGGTGGGTGGATA
CGTGTGAAGGCCACACGCACGCTTTGAGCTTCTCGGTACGAGTGTATTGA
TGCGCGCAAGAGAGGGTAAGTTTATCCGAGGGTCGTGAAACCATAGCGGT
AGAAAGTGGGGCCTGTCACAGGTTATCCAACCTGGAACAGTGACGCCATG
CCGTGCGTCGGTGGGGAGGGATCGGCGTACACTGGCAGTGCTAACTCAGC
CGGTGTTGCTTGTGGAGCCACCAATCTGAACCACGGCGGTCAATTGCCGG
GGGGTCTGCTCAAGAGTGTTATTGTTCTGTTTCGAAGGCTTCTTTTAGGT
GTGCTCGCCGATTTGGTGTAGATGCGTGCACGTCGGTGGGGCCCGCATCG
TGTTGTCTGGATTCTGGAGTAGACCTGAGATGGAAGCGTGGGCAACATGC
ACCGTCCGTCCGTGAGAGGCCAACTGACCCTAGCACCGTTGTCAGTACTC
CATGTTGTCCGATATCCTCGGCCATGAGTTCCCTCCCGAGTTTCGCTGGT
TCTCAGAGTAGATGCCGAAGGATAAGTTATGTGGTATGGTAGTGATGTAC
TTCCTCGTTCCCTTTGTGACACCTTGTAGAGAGTGCCGGCGTGTAAAGGG
CATGCCGCTATTGTAGCAGTGAGAGCTATGTACGCGTACGTTGTTTTTGT
GCGTTTGCAGTACGGAGCTGCGTGACTGCTGTTTGTTCCTGCCTGCTTCA
TCTTAGAACAAAAGATCACTTGAACATTTGGTTGTCGGTATCGTGCTGGC
GTGGGCTGTTGAGTTTTTCAGATGGGCAGCATGGGCGGGTCTCTCCGATT
TTTTTTGTGTTTTTCGTGAACAGCTGTATAGACAAAAGAGGTGTCTTGTT
TGGGATGTGTAGGTTCGTGGGTTGGGTGTAGACTAGACATGGACGTTATG
CAACACCGTTGGCGCCAACGTAGTGTTCTGCAACGAGCGAACTCTTATTT
TCGAGTTGTCTATTGCATGGCGTGGTTACCCTTGTCGTCAAGTTCGTCGC
TGGACGTTGCTTTCGTGGTGTTGTCCCTGATCAAAGCTTGTGTGGTCGGG
TTTGCGCTGAAAGTTGCGGTGGGGGTTGCGGAGTGGACGATAGGCTGTAC
CGTCAGTGTCAATACATTCTGCAGAAATTTTTCCGCAAGCGGACACGCGT
TTCGGAGTTTGTACGAGCCAAATGAAGTTGAAACCCTGTACGAAGATGGA
TCTATCACCGGAGAACCACGAATAAAATCGACAAATAGTTGGGGCAGTAA
AAGCGCATGGGAACGGACTCTGCGAAGTCGATCGCTGCGCTGGGTGGAAT
GGGTGTCAAGAGCTTTCGCAACTCGTGGGAAGCAGAGACGAGGCCCTTTT
GGTTTCTTGGATCTTGAGGCTCTTGTATGAGCGGGAGCGGGAGGCATCTG
CCAGCTTGGCTCCCAACAAGAATTCACAGTGTTTCGTGTTCTCTCCCAAG
CAGTCATGGTCCTGAAGCGCTTTTGCTCGAGCAAACGCGGCTGTCACGCT
GTCCGGCCATGTTCGCATTTTCATTTTACGCCAAAGAATAGCGAGCTTGA
GTGCAGCGGGTATTTGTAGACACCAATGGTTTCCCCCGCCAGAATGGAGC
GTCTACGCTGCTTTCAAGTTCTCGCCAAAATCGTCAGTAGTAGTAGCAGC
AGCAGCAGTCAATTACACATGGCACATGTAATGTTCTGGATGGAAAAAAA
TGTATTCACAAAAGAATCCCACGCTCTTCTGCTTGGTAATGCATAAAACA
CACAATTGGCGGCAATAACGTCCCGAGAGCTCTACTTTTTTCGACGTCAA
ATTGCCAAACTGCCAGACGCTGAGATTCCCAAGGCTGGTCACAACGGGTT
CAAACGACCAAGCTCGGCATCAACGTGCCCCATCAATCATTTGTGGAAAC
AACCGTCTTCTACGACAGAGCAGCGCGCTTAGCCCGAACACTTAACTGTC
GCTGAAAAATCCGTCTCTCTACAGCATGCGGCCAGGCTACCACCGCTGTC
GGTACAAATTAGACTGCAACGTGTTGGCAAAAATAACAAATACGAAAACG
CCTGCCAAGCAAGACACGGAGAGTACATGCCAGTGGTCGGTTCGCCTCAA
ACCAATTCTACCCCGCGGAGACGCAATACAACACGTACACCATGCGATCC
CAACGGCTGTTGTAGAATCCTCGTTCCCTGGTAAGGTGCGCAAGGCCTTT
CTCCCGCGTCACCGCTCACCCCAACAGAAACATCACCGCTGGAATGGTGA
TGCCCCCCTACCCCCCCCAAAACCTCCG

Coding sequence (CDS) from alignment at Scaffold_323:64480..67407+

>EsuBft889_5a-0001 ID=EsuBft889_5a-0001|Name=EsuBft889_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=228bp|location=Sequence derived from alignment at Scaffold_323:64480..67407+ (Ectocarpus subulatus male Bft15b)
ATGGAAGGAATGGATGTTTCCGAGGAACGGCCTCCGGCTAGGGCAAAGCA
ATACAAGCGTTACCTGGCGCCGCACGCGGATGCTCACATTAACGTTGGCC
CGGAGTATCAGGCGGCCATCCCGGCGCTCGAGCCGAGTGTTGCGTTAATT
CCGCCAACACCACCAAGATTAAGCGAACAAGGAACCGCGGAGGCCGCCGC
CGCCGCCTCCTCCGAAATGGACGAATGA