EsuBft889_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft889_4a-0001
Unique NameEsuBft889_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_323contigScaffold_323:67516..69707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FT20
ProteomeIdEsuBft889_4
Protein domainsIPR006649
Protein domainsIPR027141
Protein domainsIPR010920
Protein domainsG3DSA
Protein domainsIPR001163
Ownerapollo_admin@sb-roscoff.fr
Notesmall nuclear ribonucleoprotein sm d3 os:schizosaccharomyces pombe (strain 972 atcc 24843) gn:smd3 pe:1 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length538
Hectar predicted targeting categoryother localisation
Evalue1.5e-73
EggNOG OGsCOG1958@1|root,KOG3172@2759|Eukaryota
Ec32 ortholog descriptionSmall nuclear ribonucleoprotein-associated protein D3
Ec32 orthologEc-04_002450.1
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameSMD3
KEGG koko:K07442,ko:K11088,ko:K18738
KEGG Pathwayko03040,ko04139,ko05322,map03040,map04139,map05322
KEGG ModuleM00351,M00352,M00354,M00355,M00398
GOsGO:0000243,GO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005697,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006342,GO:0006351,GO:0006353,GO:0006355,GO:0006366,GO:0006369,GO:0006376,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0006996,GO:0008150,GO:0008152,GO:0008213,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0017069,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030620,GO:0030702,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032259,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0036211,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046540,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070034,GO:0071004,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071208,GO:0071209,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EC2.1.1.219,2.1.1.220
DescriptionU7 snRNA binding
COG categoryK
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03032,ko03041
Cross References
External references for this mRNA
DatabaseAccession
GO0071208
GO0031124
GO0043186
GO0071004
GO0005682
GO0034719
GO0005683
GO0005685
GO0007517
GO0034715
GO0005687
GO0007417
GO0005689
GO0006369
GO0005829
GO0003729
GO0007052
GO0019899
GO0071013
GO0045451
GO0046540
GO0048542
GO0071011
GO0034709
GO0000243
GO0005730
GO0070062
GO0005654
GO0000387
GO0008334
GO0030182
GO0007422
GO0007067
GO0034660
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft889_4aEsuBft889_4aEctocarpus subulatus male Bft15bgeneScaffold_323 67516..69707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft889_4a-0001EsuBft889_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_323 67540..69195 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft889_4a-0001-exonEsuBft889_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_323 67516..67564 -
EsuBft889_4a-0001-exonagat-exon-23549Ectocarpus subulatus male Bft15bexonScaffold_323 67809..67812 -
EsuBft889_4a-0001-exonagat-exon-23548Ectocarpus subulatus male Bft15bexonScaffold_323 68011..68221 -
EsuBft889_4a-0001-exonagat-exon-23550Ectocarpus subulatus male Bft15bexonScaffold_323 69076..69224 -
EsuBft889_4a-0001-exonagat-exon-23551Ectocarpus subulatus male Bft15bexonScaffold_323 69583..69707 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft889_4a-0001-exonagat-three_prime_utr-22723Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_323 67516..67539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft889_4a-0001-cdsEsuBft889_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_323 67540..67564 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft889_4a-0001-exonagat-five_prime_utr-14703Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_323 69196..69224 -
EsuBft889_4a-0001-exonagat-five_prime_utr-14704Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_323 69583..69707 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft889_4a-0001 ID=EsuBft889_4a-0001|Name=EsuBft889_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=538bp|location=Sequence derived from alignment at Scaffold_323:67516..69707- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TACCACCATCCTGCCACGGCGCTACTACCCCAAGCTATCGACAGGACGGG
AGAGTTGGCACCAGCTCGCCGGGGATTGCTCACTGTTACAGCAACGCCGT
CGCTAGACTTGAGCTGTTTTCAAAATGTCTGTCACAGGCAATGCCGGCAT
CGGTATGCCCATCATCCTTCTGCACGACGCGGAAGGGGGTATCATTACCG
TAGAGCTGAAGAACGGCGAGGTGTGCCGAGGAGTGCTGGACGAGGCGGAG
GATAGCATGAACCTCGTGCTCAAGGACTGTGTGAAGACCAACATACGGGG
GAAGACAAGTACCTTGCAACAGCTCTACATACGCGGGAACCAGATTGTAT
TTTGTATCGTGCCAAACATGCTGCGGAATGCGCCCATGTTCGCGAGGATC
AAGCAGTGGAGAAAGTACAAGGGGCATCCCCCCGTGCTGGCATCAGAGGG
GGCGAAGGGACAGCGAGCCGCGATCATCCGCAAAGCGGTCTGCTATGGGT
GGCGGGAGAGGTGACGGAGGAGGGCGAGGATTTGGAGG
back to top

protein sequence of EsuBft889_4a-0001

>EsuBft889_4 ID=EsuBft889_4|Name=EsuBft889_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=119bp
MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLKDCVKTNIRGK
TSTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGA
KGQRAAIIRKAVCYGWRER
back to top

mRNA from alignment at Scaffold_323:67516..69707-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft889_4a-0001 ID=EsuBft889_4a-0001|Name=EsuBft889_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2192bp|location=Sequence derived from alignment at Scaffold_323:67516..69707- (Ectocarpus subulatus male Bft15b)
TACCACCATCCTGCCACGGCGCTACTACCCCAAGCTATCGACAGGACGGG
AGAGTTGGCACCAGCTCGCCGGGGATTGCTCACTGTTACAGCAACGCCGT
CGCTAGACTTGAGCTGTTTTCAAAAGTGAGCTGAATCAAGATTGGTGTGG
CTGGATTTGGCGCGAGAGGGAGCCTCTGACATTCGATCTGACAATCGAGA
TACGAGGCATCAAAGCCGCGTATCACCACCACAATTGTCTTGCGTCGAAA
GTGGCCAGTAGCCAGTGCTGACGAACCTTGGCGATTAATCCTGATAGTTA
TTGCTTCAGTCGCACAGGACGCCAAACGATTTTGCTGTGATTTCCGTTTT
TGCACACGCTTTCAACACCCTCCTAGTCTATGCATACCCCTTGCTCTCAA
GTCTAACCTCGGTACCGCTCTCTTTCTCTCCCTCTCTCTGCCCTGCCTTT
CTTGTTGCGATGCACGGCACCGCGTGCAACCAGTGTCTGTCACAGGCAAT
GCCGGCATCGGTATGCCCATCATCCTTCTGCACGACGCGGAAGGGGGTAT
CATTACCGTAGAGCTGAAGAACGGCGAGGTGTGCCGAGGAGTGCTGGACG
AGGCGGAGGATAGCATGAACCTCGTGCTCAAGGTGCGCGTGTGTTCACCC
CTGCTGCTGCAAAGGACAGCAGCAGCAGTGGACAATAGACCACAATGACC
GACCGACAGATAGACCACTAGGCAAAGTGTAGTGCCCAGGAGCCAGACAA
ACGGTCGTTCGAAGGGTAGTGGATGGCACGCCTCGTTGTACAAGTGTGTT
AGCTGACAAAGACCATCCTGAGCACGTCATGGCAGCTTTTCGAACGGCAG
TTGCATCGCTCTTTGCAAGCAGACATTCATGTGGTGGAAGCAACAGCGTA
GGGCAAAGCATAGATTTAATTCGGTGATGGAAGTCGAAGGCGGGATGCCG
CATCATCCCGCCGCAAGCGCTCAAGAAAATAACGAAATGTCGCTACGCTG
CCGGGTGGCTGATTGATTTCTAGGGAGTCGGGACGAATTTCAATTTTTTA
TTATCATGTAGCATACCTCTCCTAGAGTACCATTCCCACGCCAGTGCTGC
GTTTTGCTGATCTTCCATGCCCGTGCTTTTTTGGTGGCCGTGCGATACGT
GATGGATATGAGTTTGATTTATCAGGTGAGGATTTCGCAACGTGATTTCG
ATGGCAATTTTGTTGGTCGAAGCTCCACGCTTCGCACCAGCCACAGTGCT
CCTTCCACCCACCCACCCCCGGATTATTTAGAGTGCCCTTGTTGCAAGCT
ACAGATGAGATGGAACATGCAGACCAATGAGACGAACACAACATATGAAC
GAACAAACAAAATTGAATCGCTCTGGCCCAAAATCAGCACACACGCTTGA
AGGTAGAATCACATTAGTAACCTGCTGTATTCCGCTCCTACCCGCCACGG
GCACGCCCTCTAACGCCCTCTAACACGCCCACGCAGGACTGTGTGAAGAC
CAACATACGGGGGAAGACAAGTACCTTGCAACAGCTCTACATACGCGGGA
ACCAGATTGTATTTTGTATCGTGCCAAACATGCTGCGGAATGCGCCCATG
TTCGCGAGGATCAAGCAGTGGAGAAAGTACAAGGGGCATCCCCCCGTGCT
GGCATCAGAGGGGGCGAAGGGACAGCGAGCCGCGATCATCCGCAAAGGTC
AAACCAAGCGAAACGAACTGTTGAAATTTTTCAAGTCATGTTTTCCTGCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNACAC
TGAGGAATCCCACCCCGCGGTCAGGGAGTACAGTACGTCTCTCTTTCAGT
GGATGGACTTGCTTGAGTCTGTTGTCGACTTGCCGCGATATTCAGCGGTG
TGCGAGATTTTATCGCCACCGCAGCAGCTTTCGCTCCCAAAAGTTTCGGC
CGATTGCGGGGTTCCCGCTGCCATGGTACGGTACCACGGTCTAGAGTGAA
TACATCGGAAACACCGAACCATTTTCTCGATCCAGCAACGCATGGGTTTT
TCCTCCCGCCCTTTTGTGGTGCGCCTGAAATCCTCAACATTCAACCTTTT
GCTCACCCTCTCGTCTGAATATAACTGCGCAACCCTTCCACAGCTGCTAT
GGGTGGCGGGAGAGGTGACGGAGGAGGGCGAGGATTTGGAGG
back to top

Coding sequence (CDS) from alignment at Scaffold_323:67516..69707-

>EsuBft889_4a-0001 ID=EsuBft889_4a-0001|Name=EsuBft889_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=360bp|location=Sequence derived from alignment at Scaffold_323:67516..69707- (Ectocarpus subulatus male Bft15b)
ATGCCCATCATCCTTCTGCACGACGCGGAAGGGGGTATCATTACCGTAGA
GCTGAAGAACGGCGAGGTGTGCCGAGGAGTGCTGGACGAGGCGGAGGATA
GCATGAACCTCGTGCTCAAGGACTGTGTGAAGACCAACATACGGGGGAAG
ACAAGTACCTTGCAACAGCTCTACATACGCGGGAACCAGATTGTATTTTG
TATCGTGCCAAACATGCTGCGGAATGCGCCCATGTTCGCGAGGATCAAGC
AGTGGAGAAAGTACAAGGGGCATCCCCCCGTGCTGGCATCAGAGGGGGCG
AAGGGACAGCGAGCCGCGATCATCCGCAAAGCGGTCTGCTATGGGTGGCG
GGAGAGGTGA
back to top