EsuBft889_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft889_12a-0001
Unique NameEsuBft889_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_323contigScaffold_323:4885..5268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LFG0
ProteomeIdEsuBft889_12
Ownerapollo_admin@sb-roscoff.fr
Noteregulator of rdna transcription protein 15 os:saccharomyces cerevisiae (strain atcc 204508 s288c) gn:rrt15 pe:3 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length384
Hectar predicted targeting categoryother localisation
Evalue1.51e-87
EggNOG OGs2BG5J@1|root,2S18N@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft889_12aEsuBft889_12aEctocarpus subulatus male Bft15bgeneScaffold_323 4885..5268 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft889_12a-0001-exonEsuBft889_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_323 4885..5268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft889_12a-0001-cdsEsuBft889_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_323 4885..5268 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft889_12a-0001EsuBft889_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_323 4885..5268 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft889_12a-0001 ID=EsuBft889_12a-0001|Name=EsuBft889_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=384bp|location=Sequence derived from alignment at Scaffold_323:4885..5268- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGTCGCTATGAA
CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCT
CTAGCTTAAAATCCAAAAGAACTAAAGGATCGATAGGCCATGCTTTCACA
GTTTGTATTCGTACTGAAAATCAAAATCAAGTTAGCTTTTACCCTTTTGT
TCTACATGAGATTTCTGTTCTCATTGAGCTAACCTTAGGACACCTGTGTT
ATCGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGATGTTGTC
TCCCGCGTAGATCGCCCTAGTAAAAGGGCTTCAGTCCAGAATCCACCACC
CGCGAGGGCGATAGAACTCTACCTGACGGAATAA
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protein sequence of EsuBft889_12a-0001

>EsuBft889_12 ID=EsuBft889_12|Name=EsuBft889_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=127bp
MIGRADIEESKSNVAMNAWLPQASYPCGNFSDTSSLKSKRTKGSIGHAFT
VCIRTENQNQVSFYPFVLHEISVLIELTLGHLCYRLTDVPPQPNSPPDVV
SRVDRPSKRASVQNPPPARAIELYLTE
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mRNA from alignment at Scaffold_323:4885..5268-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft889_12a-0001 ID=EsuBft889_12a-0001|Name=EsuBft889_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=384bp|location=Sequence derived from alignment at Scaffold_323:4885..5268- (Ectocarpus subulatus male Bft15b)
ATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGTCGCTATGAA
CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCT
CTAGCTTAAAATCCAAAAGAACTAAAGGATCGATAGGCCATGCTTTCACA
GTTTGTATTCGTACTGAAAATCAAAATCAAGTTAGCTTTTACCCTTTTGT
TCTACATGAGATTTCTGTTCTCATTGAGCTAACCTTAGGACACCTGTGTT
ATCGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGATGTTGTC
TCCCGCGTAGATCGCCCTAGTAAAAGGGCTTCAGTCCAGAATCCACCACC
CGCGAGGGCGATAGAACTCTACCTGACGGAATAA
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Coding sequence (CDS) from alignment at Scaffold_323:4885..5268-

>EsuBft889_12a-0001 ID=EsuBft889_12a-0001|Name=EsuBft889_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=384bp|location=Sequence derived from alignment at Scaffold_323:4885..5268- (Ectocarpus subulatus male Bft15b)
ATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGTCGCTATGAA
CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCT
CTAGCTTAAAATCCAAAAGAACTAAAGGATCGATAGGCCATGCTTTCACA
GTTTGTATTCGTACTGAAAATCAAAATCAAGTTAGCTTTTACCCTTTTGT
TCTACATGAGATTTCTGTTCTCATTGAGCTAACCTTAGGACACCTGTGTT
ATCGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGATGTTGTC
TCCCGCGTAGATCGCCCTAGTAAAAGGGCTTCAGTCCAGAATCCACCACC
CGCGAGGGCGATAGAACTCTACCTGACGGAATAA
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