EsuBft889_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft889_11a-0001
Unique NameEsuBft889_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_323contigScaffold_323:6312..7926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft889_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length95
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft889_11aEsuBft889_11aEctocarpus subulatus male Bft15bgeneScaffold_323 6312..7926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft889_11a-0001EsuBft889_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_323 7005..7661 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft889_11a-0001-exonagat-exon-23584Ectocarpus subulatus male Bft15bexonScaffold_323 6312..6328 +
EsuBft889_11a-0001-exonEsuBft889_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_323 6661..6681 +
EsuBft889_11a-0001-exonagat-exon-23583Ectocarpus subulatus male Bft15bexonScaffold_323 6945..7835 +
EsuBft889_11a-0001-exonagat-exon-23582Ectocarpus subulatus male Bft15bexonScaffold_323 7897..7926 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft889_11a-0001-exonagat-five_prime_utr-14699Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_323 6312..6328 +
EsuBft889_11a-0001-exonagat-five_prime_utr-14700Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_323 6661..6681 +
EsuBft889_11a-0001-exonagat-five_prime_utr-14701Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_323 6945..7004 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft889_11a-0001-cdsEsuBft889_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_323 7005..7661 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft889_11a-0001-exonagat-three_prime_utr-22719Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_323 7662..7835 +
EsuBft889_11a-0001-exonagat-three_prime_utr-22720Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_323 7897..7926 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft889_11a-0001 ID=EsuBft889_11a-0001|Name=EsuBft889_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=959bp|location=Sequence derived from alignment at Scaffold_323:6312..7926+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATTCAGAAGTTACTTGGAACGAGACTTCAACGGAAAGGACCCATCCGGCA
AGCAAGCAGCAGCTTCCAACGACAGACACCTGCCCGACTTATAGGTCGAT
GCGCGAGCAATGCCTGAGGATGAAGTCTGTCGACGGGTACTGGCAAGATG
GATTCAAAGACCACATGCCAGAACGAGACTTCAACGGAAAGGGTTGGGGT
ATCAACCCCAAGGCGAAGGGCAGCAACGCGTCAGCACTCACAGGAGAGAA
TTGCGTTATGTGGATGTCGGAGCATTCTGACATCGGTCCCGATGGGAAGT
TGGTCACGATGACGTGCGGTTGCGACCCGGTGAAGGCCTTAAAGCATAAC
TGTAGGGGGTGCGGGTGCAAATGGCGCAAGTGCTCCCTTGCTTGCGGCTG
CAGGGGCCGTTGCCATTTGGGTCGCAAGCTTGTACCCGGTGCACCGACCC
GCCAGGCCACGTACACCGGTCCTGCCGGTGCTGCACACTCCGCAGTCGTT
GACAGCGCCATGACGGCTCTTCTGGCGTCCCGGAACGCTAGAACGGACGA
GGAAGAGGAAGACCCGGACGATCCCGGTTCGGACGATGACGACACCGGCC
GTTCGGACAGTGACTCGGACGATTTTCTGGAGCTGGAAGCGGAAGAGTCG
GCTGACAGCGACTTAGACTCTGATGAGTCCGACCCTGGGTGGGGCGGTGT
CGGTGAGGTCAACGCTCAGGACGATGCAAACTCTGAGGGCGAAGCATGGT
TCTGACCGAGTTTCATCAGGTGTGTTTGGCCATCCTATCGCTATTCATTT
TTCTTCTTGTGTAGACATGTGCGAGTGTTGATGTCGCCTATATTTTGTTC
GTCGCCTAGTGATCATGTTGGTGTATCGCGCCGGTGCCATACCGAGCCCA
CAAGATGCGGTCTGCGTATCGTGTTTCAGGACTTACTGGCTTCGACCCCC
TGCTTGGGT
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protein sequence of EsuBft889_11a-0001

>EsuBft889_11 ID=EsuBft889_11|Name=EsuBft889_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=218bp
MREQCLRMKSVDGYWQDGFKDHMPERDFNGKGWGINPKAKGSNASALTGE
NCVMWMSEHSDIGPDGKLVTMTCGCDPVKALKHNCRGCGCKWRKCSLACG
CRGRCHLGRKLVPGAPTRQATYTGPAGAAHSAVVDSAMTALLASRNARTD
EEEEDPDDPGSDDDDTGRSDSDSDDFLELEAEESADSDLDSDESDPGWGG
VGEVNAQDDANSEGEAWF
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mRNA from alignment at Scaffold_323:6312..7926+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft889_11a-0001 ID=EsuBft889_11a-0001|Name=EsuBft889_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1615bp|location=Sequence derived from alignment at Scaffold_323:6312..7926+ (Ectocarpus subulatus male Bft15b)
ATTCAGAAGTTACTTGGGTAAGAAAAAGAAGTACGCTTTGATTCGAGACT
CGGCGCGTTTGATTGCGCTGACCTCGGCGAGACGCCCCTCGCCCGACCGA
TAATATCAAAAGTCATTTCACGTGTTCCCTTCTCTCCCCCCATATCAGGT
CCGGCTCTCTCGAACCCCCCCCACGAGACAAGCCCCCCTCTCTCTCCGAG
CGTCCCCTTCCCCGAGACCCATCCGGCAAGCAAGCAGCAGCTTCCAACGA
CAGACACCTGCCCGACTTATAGGTCGATGCGCGAGCAATGCCTGAGGATG
AAGTCTGTCGACGGGTACTGGCAAGATGGATTCAAAGACCACATGCCAGA
ACGAGACTTCAACGGAAAGGGTTGGGGTATCAACCCCAAGGCGAAGGGCA
GCAACGCGTCAGCACTCACAGGAGAGAATTGCGTTATGTGGATGTCGGAG
CATTCTGACATCGGTCCCGATGGGAAGTNTGATTGCGCTGACCTCGGCGA
GACGCCCCTCGCCCGACCGATAATATCAAAAGTCATTTCACGTGTTCCTT
TTCCCCCCATATCAGGTCCGGCTCTCTCAAACCCCCCCCACAAGACAAGC
CCCCCTCTCTCTCCGAGCGTCCCCTTCCCCGAGACCCATCCGGCAAGCAA
GCAGCAGCTTCCAACGACAGACACCTGCCCGACTTATAGGTCGATGCGCG
AGCAATGCCTGAGGATGAAGTCTGTCGACGGGTACTGGCAAGATGGATTC
AAAGACCACATGCCAGAACGAGACTTCAACGGAAAGGGTTGGGGTATCAA
CCCCAAGGCGAAGGGCAGCAACGCGTCAGCACTCACAGGAGAGAATTGCG
TTATGTGGATGTCGGAGCATTCTGACATCGGTCCCGATGGGAAGTTGGTC
ACGATGACGTGCGGTTGCGACCCGGTGAAGGCCTTAAAGCATAACTGTAG
GGGGTGCGGGTGCAAATGGCGCAAGTGCTCCCTTGCTTGCGGCTGCAGGG
GCCGTTGCCATTTGGGTCGCAAGCTTGTACCCGGTGCACCGACCCGCCAG
GCCACGTACACCGGTCCTGCCGGTGCTGCACACTCCGCAGTCGTTGACAG
CGCCATGACGGCTCTTCTGGCGTCCCGGAACGCTAGAACGGACGAGGAAG
AGGAAGACCCGGACGATCCCGGTTCGGACGATGACGACACCGGCCGTTCG
GACAGTGACTCGGACGATTTTCTGGAGCTGGAAGCGGAAGAGTCGGCTGA
CAGCGACTTAGACTCTGATGAGTCCGACCCTGGGTGGGGCGGTGTCGGTG
AGGTCAACGCTCAGGACGATGCAAACTCTGAGGGCGAAGCATGGTTCTGA
CCGAGTTTCATCAGGTGTGTTTGGCCATCCTATCGCTATTCATTTTTCTT
CTTGTGTAGACATGTGCGAGTGTTGATGTCGCCTATATTTTGTTCGTCGC
CTAGTGATCATGTTGGTGTATCGCGCCGGTGCCATACCGAGCCCACAAGA
TGCGGTCTGCGTATCGTGTTTCAGGTAACAAACTTCCGCGAGATGATTTC
GTCCAATGGCGGCTCCCCCGTTCGGCGTTGGTCAGGACTTACTGGCTTCG
ACCCCCTGCTTGGGT
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Coding sequence (CDS) from alignment at Scaffold_323:6312..7926+

>EsuBft889_11a-0001 ID=EsuBft889_11a-0001|Name=EsuBft889_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=657bp|location=Sequence derived from alignment at Scaffold_323:6312..7926+ (Ectocarpus subulatus male Bft15b)
ATGCGCGAGCAATGCCTGAGGATGAAGTCTGTCGACGGGTACTGGCAAGA
TGGATTCAAAGACCACATGCCAGAACGAGACTTCAACGGAAAGGGTTGGG
GTATCAACCCCAAGGCGAAGGGCAGCAACGCGTCAGCACTCACAGGAGAG
AATTGCGTTATGTGGATGTCGGAGCATTCTGACATCGGTCCCGATGGGAA
GTTGGTCACGATGACGTGCGGTTGCGACCCGGTGAAGGCCTTAAAGCATA
ACTGTAGGGGGTGCGGGTGCAAATGGCGCAAGTGCTCCCTTGCTTGCGGC
TGCAGGGGCCGTTGCCATTTGGGTCGCAAGCTTGTACCCGGTGCACCGAC
CCGCCAGGCCACGTACACCGGTCCTGCCGGTGCTGCACACTCCGCAGTCG
TTGACAGCGCCATGACGGCTCTTCTGGCGTCCCGGAACGCTAGAACGGAC
GAGGAAGAGGAAGACCCGGACGATCCCGGTTCGGACGATGACGACACCGG
CCGTTCGGACAGTGACTCGGACGATTTTCTGGAGCTGGAAGCGGAAGAGT
CGGCTGACAGCGACTTAGACTCTGATGAGTCCGACCCTGGGTGGGGCGGT
GTCGGTGAGGTCAACGCTCAGGACGATGCAAACTCTGAGGGCGAAGCATG
GTTCTGA
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