EsuBft888_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft888_9a-0001
Unique Name	EsuBft888_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_71	contig	Scaffold_71:279884..284388 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	164328.Phyra94978
ProteomeId	EsuBft888_9
Protein domains	PTHR22814
Protein domains	IPR006121
Protein domains	G3DSA
Owner	apollo_admin@sb-roscoff.fr
Note	copper transport protein atx1 os:arabidopsis thaliana gn:atx1 pe:1 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	4776\|Peronosporales
Length	1039
Hectar predicted targeting category	other localisation
Evalue	1.21e-16
EggNOG OGs	2CZEZ@1\|root,2SA2R@2759\|Eukaryota,3QGFT@4776\|Peronosporales
Ec32 ortholog description	copper chaperone
Ec32 ortholog	Ec-15_003910.1
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K07213
KEGG Pathway	ko04978,map04978
Description	Heavy-metal-associated domain
COG category	S
BRITE	ko00000,ko00001

Cross References

External references for this mRNA


Database	Accession
GO	0010314
GO	0016458
GO	0051568
GO	0046872
GO	0009909
GO	0006827
GO	0006878
GO	0000785
GO	0000302
GO	0007568
GO	0005515
GO	0055085
GO	0003824
GO	0005739
GO	0046686
GO	0018024
GO	0044212
GO	0009651
EC	2.1.1.43
GO	0043169
GO	0044434
GO	0010093

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft888_9a	EsuBft888_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_71 279884..284388 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft888_9a-0001	EsuBft888_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_71 279965..283655 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft888_9a-0001-exon	agat-exon-81935	Ectocarpus subulatus male Bft15b	exon	Scaffold_71 279884..279967 +
EsuBft888_9a-0001-exon	EsuBft888_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_71 282169..282250 +
EsuBft888_9a-0001-exon	agat-exon-81936	Ectocarpus subulatus male Bft15b	exon	Scaffold_71 283516..284388 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft888_9a-0001-exon	agat-five_prime_utr-14698	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_71 279884..279964 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft888_9a-0001-cds	EsuBft888_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_71 279965..279967 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft888_9a-0001-exon	agat-three_prime_utr-22717	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_71 283656..284388 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_71:279884..284388+
coding sequence from alignment at Scaffold_71:279884..284388+

spliced messenger RNA

>EsuBft888_9a-0001 ID=EsuBft888_9a-0001|Name=EsuBft888_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1039bp|location=Sequence derived from alignment at Scaffold_71:279884..284388+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GACCACATCACATCAGATCACACGCCCATCCAGCAGCTACACAACCAATT
TCAGCAGCAGGACACGTACAAATCTCCCACCATGAGCGAGACGACCGTGT
TCAACGTGGGGATGACTTGCGACGGTTGCGCCAACGCAACGAAGAGAATC
CTGAGCAAGATGGAAGGCGTGTCGGCGGTGGAGGCGGACGTGTCTGCCAA
GACAGTGACAGTGTCGAGCGATGGATCCACGACGAAGCAGGCCATGCTGG
ACGCCTTGCTCAAGTGGTCCGCGGCCAGCGGCAAGAGCGTCGAGCTCGCC
AGCTAGAAGAACCCTCTTCTTTGTTGCGGTTATTGTGTCGGAACCACTTG
TTGGCTTTGCGCGGATGAAGAAAACTTTGCCATGGTTGGCCGACTGTATT
TTGTAGGTGTCAGGCGTGGCGGCGCGGAGCCTAGGGTGGCGGGGCAGGGT
TGTATTTTTTGGGCGTTGTAAATTGGAGGGCATCATCCCTGTCTCGGCTG
GAGAACCACTTTCGTGTCGTTGTTTGCTGCTGCTGCAGGCGTGTGTTGAC
GTGGGTTCGCGCGCACGGCGATAGCGGTTGGGGTCGTGGAAGCGTTCTTG
TGTGTGGGAACCGCGGAGAACACCGAACAATTCACCGGGACGATAACATC
TCGAATATGTGCCGAACACACCAGTGTATCGATTCGGAGGGAACTGCTTG
GATGTCGAATGTACAGTGTGAAGTGCTCAGCGCCGCATGACCGGAGGTTT
GGTCTTCACGAAGAAAGCAGTGGTCGAAGCTGCTGCTTACATCGAACGGG
GTTGTCGTGGAAGTCTAAGTGCACGTAGAAAAAATCAAGAGACAACTCCC
CGTCGGGAGGCTGGCGTCTTTGTTTCACCCCTCATGAAGACCTTCCCTGG
TGCCCAGCTGACGTCCCATGACCGCTGTCGTAGCAGGCACAAGTCGCCCC
GAGAAGAGGGTTTGGAGTAACGGCGGACGGCAACAACAATGCGACACTTT
GCATCATCAGGGGGCCCTGTGTTGCCTGTGCGTCGAGTC

protein sequence of EsuBft888_9a-0001

>EsuBft888_9 ID=EsuBft888_9|Name=EsuBft888_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=74bp
MSETTVFNVGMTCDGCANATKRILSKMEGVSAVEADVSAKTVTVSSDGST
TKQAMLDALLKWSAASGKSVELAS

mRNA from alignment at Scaffold_71:279884..284388+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft888_9a-0001 ID=EsuBft888_9a-0001|Name=EsuBft888_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4505bp|location=Sequence derived from alignment at Scaffold_71:279884..284388+ (Ectocarpus subulatus male Bft15b)
GACCACATCACATCAGATCACACGCCCATCCAGCAGCTACACAACCAATT
TCAGCAGCAGGACACGTACAAATCTCCCACCATGGTGAGTACACGAGAGC
ATGATTCGTGGTTATGTATCATGGTATATTCACTGCTTCATACACTCCCA
TCTCAATCAAAATCGCAGATTGTTTGCGTTGTTGACGTGCACTACTGCTG
TGCACTCGCCGCACAGGTTTGCGTACTGGCAGCTGTCGCCCACATTGAGC
TGATCACACAGAGTAGGATGACTACCGCCCGGCCATCCCCGTAGAGATAC
TCCAAGAGCCGACCGGTTGGCTCCAAAAGGTTTTGCAACGTCGGCATCAA
CGTCGCTGGGCCCGTTGTTGGTTCGCATCGCAGCACTATGCTACTTTGTG
TTGTTGGTCGTGGCGGGGAGGAAGACGACGGTGGTGACGGACGCGGAGGC
CTTGTGGGCCATGCTCTACGCTGACGACGCGGCCATCGTCTCGCGCTCGC
CGGAGAGTCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTG
TTCGGACTGATGGTGTCGGAGCCAAAGACAGAGATCATGTGCATGCTGCC
AAAAGGGATCGAGGAACACCCGTTCACGGTCAGCGCCGCCGGCCAGACGT
ACAAGCAGACAGATCGGTTTGTGTACCTCGGACGTACCATCTCCGCGGAC
GGGAAGGCCGACCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTG
CTACCGCCGGAACAGTGCTTCGATGTACGACAGGCGACGGGCCGACCGCC
AGCTCAAGATCCGGCTTCTCCAGGCTGAAGTGGTGGAGACTCTCCTGTAT
GGGTGCGCCTCGTGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGG
GACCCACCGCCAGTTCCTCACACGGTGCATCGGCTGGAGCAAGCGGAAAC
GCTCCGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGC
GAGGAAACCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTTTCGCGGG
CTTCGTTATGCGCATGGAGGACAACCGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNATTTTGATCGGTGTCCGAGGGCTCTTTTCTCGAACAGTAGG
TGCGATACCTGTTCTTTTCTTTCTTTCGATCATTTTGTTTTCTTTTTCCG
AGTGGTTTGTATCCTATTTTTGTTTTTTGTTTTCTCGCGGCGTCGTATGT
GCCGGGTTTTGAGACCACGGGCTCCCCATTTTTTGTGGACTATAGAGCTA
ATTTGAGAAACAACAACAACAACAACAACGAAGTATTATTTGAACTGCTG
TAGTCTATCACCGTGGACTGGGCGTATCTTCTGCTTGCGCCCGTGGTTCT
CGCTCACGAGTGTAGCCACCTTGAACCCTCGACCACCGTCGGCGATGTGC
AGCATGTCGTATGCATATAGATCCCAACCCCGCTGCCCCTTCCGATTATC
ACGAATTGTACAATAATTCATCCGCCTTTTTCGTTGTATTTTCCGTATGC
CCCTTCATTTCGTCTATCTGCACACCCCGGCGCAGAGCGAGACGACCGTG
TTCAACGTGGGGATGACTTGCGACGGTTGCGCCAACGCAACGAAGAGAAT
CCTGAGCAAGATGGAAGGTGAAGTTGCGCTCCGTGTAACGCTTGGGCGAT
TGGCGGTGTGGAATAGGTCTCTAACCATCCCTCTTGTAACCTACTGGACT
AGTTGTACTTGCTACTTGTATTCCTGGTATCAGGTAATGTAGTCCCGGGA
AAAAAGAAAAAATAATAAAAGAGTTTCTGGTGGTGGCGCGTACAACGTTT
ACGTCGTTTCCGGCCTTACATGTCGAAAGAAGTCAGCGTAGCATGCACAG
CAGAGCTGGAGGTGGATGGCAACTTCGCAGAGAATCGATTTGCAACGACC
CTACAACAAGACTTGGTAAGACCGCCGTTTCTCGGTCATGCGCAAAATTG
AAGGTACAAGTACATCGCGAGGGTAAAATTACCAGGCACCTGTCCCGTCT
TACACGTGGTACAATATGCTGACCTTGGGGGAGCGAAAAAGCTCAAGTGC
AGTAACCTACACCACACGTATTGCCGCCTATAGGACATTGAAACAAGTAA
AAAAAAAATCACGACCCCGGTTTCAGCGGGGTCAATTAAGTTTCATTCCC
TCCGCTGCTTGGGCGTGGCTGACCCCAGTTCTTTCACCACCTCGTGCTCC
TAACGCAGACCTCGGCGTGCCACTTAAGTATATGGGCACCTTAAGCAGGT
CATACCCTCCATCGGAAAGCTGTGTTTGCCCTTTGATTTTGCGTTCGACG
CCAAAAATGCCTCAGAATCACATCTGAGTTGAACCAGCTTTCTGCTGCTG
CGTGCACCATTTCAGCGCTTGTGAGGCAACTTGCACTTAGGGTGGCCTGA
ACGCTACGAACCCCCAGTTCGCCCGGTACTTGACCTTTAGAAAAGAGATT
AAAAGACCATGGAACGAATGCATGATGTGCACCGGCTGGGATCTCCACTG
CAGCGACCGCAGTTGGCCTGCGAAAGTCGGCCCAAATTCAGGTCTAAACT
CCAGCAGTCAGCAGAGAGGCCTCCAAAACGATCATCTGTCTACCTCCGAA
AACATCATACAAATTCAAGCCATGGAAACACGCAACGGACCCAAACGGCG
CTGGCCTGAGGAATAGGGAGAACCAAACGTGGCAAAAATTGGTGTGTGTG
CGTCTGCACATGTGGTCAACGCATAGGGAGGGATCAGCACTGCAAGCAAG
AGTTGTGTCAGAATAACGAAGAGTCCCTCGCGGAAAGTCTGCTTCCGGAT
GTGATTCCAGGATTTGTGATGTCTGCATAAAAATATACATGTATGGCCGT
TCATCCATCGCCACGACCCCCTTCGGCGGCAGGCGTGTCGGCGGTGGAGG
CGGACGTGTCTGCCAAGACAGTGACAGTGTCGAGCGATGGATCCACGACG
AAGCAGGCCATGCTGGACGCCTTGCTCAAGTGGTCCGCGGCCAGCGGCAA
GAGCGTCGAGCTCGCCAGCTAGAAGAACCCTCTTCTTTGTTGCGGTTATT
GTGTCGGAACCACTTGTTGGCTTTGCGCGGATGAAGAAAACTTTGCCATG
GTTGGCCGACTGTATTTTGTAGGTGTCAGGCGTGGCGGCGCGGAGCCTAG
GGTGGCGGGGCAGGGTTGTATTTTTTGGGCGTTGTAAATTGGAGGGCATC
ATCCCTGTCTCGGCTGGAGAACCACTTTCGTGTCGTTGTTTGCTGCTGCT
GCAGGCGTGTGTTGACGTGGGTTCGCGCGCACGGCGATAGCGGTTGGGGT
CGTGGAAGCGTTCTTGTGTGTGGGAACCGCGGAGAACACCGAACAATTCA
CCGGGACGATAACATCTCGAATATGTGCCGAACACACCAGTGTATCGATT
CGGAGGGAACTGCTTGGATGTCGAATGTACAGTGTGAAGTGCTCAGCGCC
GCATGACCGGAGGTTTGGTCTTCACGAAGAAAGCAGTGGTCGAAGCTGCT
GCTTACATCGAACGGGGTTGTCGTGGAAGTCTAAGTGCACGTAGAAAAAA
TCAAGAGACAACTCCCCGTCGGGAGGCTGGCGTCTTTGTTTCACCCCTCA
TGAAGACCTTCCCTGGTGCCCAGCTGACGTCCCATGACCGCTGTCGTAGC
AGGCACAAGTCGCCCCGAGAAGAGGGTTTGGAGTAACGGCGGACGGCAAC
AACAATGCGACACTTTGCATCATCAGGGGGCCCTGTGTTGCCTGTGCGTC
GAGTC

Coding sequence (CDS) from alignment at Scaffold_71:279884..284388+

>EsuBft888_9a-0001 ID=EsuBft888_9a-0001|Name=EsuBft888_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=225bp|location=Sequence derived from alignment at Scaffold_71:279884..284388+ (Ectocarpus subulatus male Bft15b)
ATGAGCGAGACGACCGTGTTCAACGTGGGGATGACTTGCGACGGTTGCGC
CAACGCAACGAAGAGAATCCTGAGCAAGATGGAAGGCGTGTCGGCGGTGG
AGGCGGACGTGTCTGCCAAGACAGTGACAGTGTCGAGCGATGGATCCACG
ACGAAGCAGGCCATGCTGGACGCCTTGCTCAAGTGGTCCGCGGCCAGCGG
CAAGAGCGTCGAGCTCGCCAGCTAG