EsuBft888_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft888_5a-0001
Unique NameEsuBft888_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_71contigScaffold_71:245435..245886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog267608.RSp0233
ProteomeIdEsuBft888_5
Protein domainsG3DSA
Protein domainsSSF51556
Protein domainsIPR006992
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl28216|Betaproteobacteria
Length39
Hectar predicted targeting categoryother localisation
Evalue1.77e-11
EggNOG OGsCOG3618@1|root,COG3618@2|Bacteria,1R5V9@1224|Proteobacteria,2VPQ5@28216|Betaproteobacteria,1JZPK@119060|Burkholderiaceae
Date last modified2016-06-14
Date creation2016-06-14
Descriptionamidohydrolase 2
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
GO0005794
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft888_5aEsuBft888_5aEctocarpus subulatus male Bft15bgeneScaffold_71 245435..245886 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft888_5a-0001-exonEsuBft888_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_71 245435..245709 +
EsuBft888_5a-0001-exonagat-exon-81902Ectocarpus subulatus male Bft15bexonScaffold_71 245766..245886 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft888_5a-0001-cdsEsuBft888_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_71 245435..245709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft888_5a-0001EsuBft888_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_71 245435..245886 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft888_5a-0001 ID=EsuBft888_5a-0001|Name=EsuBft888_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=396bp|location=Sequence derived from alignment at Scaffold_71:245435..245886+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCATAGCCGCGCAGGCTTACATACGTCCCGCTTTTTTGCTTTTTTC
AGGCACCGGCTGCAGAATGGTCGTCGACCACTTCTCGCGGCCTGACCCTG
CTCTCAACCTGGAGGACCCGGGCTGGCGAGCTGTCTTACGAGCAGCCAGA
GACAACGACAACATCGACATGAAGATCACGGGGACGTACAGGCTCGGCGT
CTGCCCGGAGATTCTCGCCGGGATGGCACAAATCGCGAGGGAGAGCTTTG
GGATCGAGCGTCTCCTCCGGGGCTCCCAGGACTTCGCGGCGCTGCTGCAG
ACTGTTCGCGACGGGTACCCCGACGAGGAGGATCAGAAGAGAGTGCTCTA
CTCCAACGCCGCCAGGGTGTTCTCGTTCCCGTCGCTGAAGTGTTGA
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protein sequence of EsuBft888_5a-0001

>EsuBft888_5 ID=EsuBft888_5|Name=EsuBft888_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=131bp
MIIAAQAYIRPAFLLFSGTGCRMVVDHFSRPDPALNLEDPGWRAVLRAAR
DNDNIDMKITGTYRLGVCPEILAGMAQIARESFGIERLLRGSQDFAALLQ
TVRDGYPDEEDQKRVLYSNAARVFSFPSLKC
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mRNA from alignment at Scaffold_71:245435..245886+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft888_5a-0001 ID=EsuBft888_5a-0001|Name=EsuBft888_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=452bp|location=Sequence derived from alignment at Scaffold_71:245435..245886+ (Ectocarpus subulatus male Bft15b)
ATGATCATAGCCGCGCAGGCTTACATACGTCCCGCTTTTTTGCTTTTTTC
AGGCACCGGCTGCAGAATGGTCGTCGACCACTTCTCGCGGCCTGACCCTG
CTCTCAACCTGGAGGACCCGGGCTGGCGAGCTGTCTTACGAGCAGCCAGA
GACAACGACAACATCGACATGAAGATCACGGGGACGTACAGGCTCGGCGT
CTGCCCGGAGATTCTCGCCGGGATGGCACAAATCGCGAGGGAGAGCTTTG
GGATCGAGCGTCTCCTCCGGGGCTCGTCGACTACCCCCACACCGGGTGCG
CCGGCCCGGAGATGCGCTACTGCGAGGACAGCCAGGACTTCGCGGCGCTG
CTGCAGACTGTTCGCGACGGGTACCCCGACGAGGAGGATCAGAAGAGAGT
GCTCTACTCCAACGCCGCCAGGGTGTTCTCGTTCCCGTCGCTGAAGTGTT
GA
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Coding sequence (CDS) from alignment at Scaffold_71:245435..245886+

>EsuBft888_5a-0001 ID=EsuBft888_5a-0001|Name=EsuBft888_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=396bp|location=Sequence derived from alignment at Scaffold_71:245435..245886+ (Ectocarpus subulatus male Bft15b)
ATGATCATAGCCGCGCAGGCTTACATACGTCCCGCTTTTTTGCTTTTTTC
AGGCACCGGCTGCAGAATGGTCGTCGACCACTTCTCGCGGCCTGACCCTG
CTCTCAACCTGGAGGACCCGGGCTGGCGAGCTGTCTTACGAGCAGCCAGA
GACAACGACAACATCGACATGAAGATCACGGGGACGTACAGGCTCGGCGT
CTGCCCGGAGATTCTCGCCGGGATGGCACAAATCGCGAGGGAGAGCTTTG
GGATCGAGCGTCTCCTCCGGGGCTCCCAGGACTTCGCGGCGCTGCTGCAG
ACTGTTCGCGACGGGTACCCCGACGAGGAGGATCAGAAGAGAGTGCTCTA
CTCCAACGCCGCCAGGGTGTTCTCGTTCCCGTCGCTGAAGTGTTGA
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