EsuBft888_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft888_4a-0001
Unique Name	EsuBft888_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_71	contig	Scaffold_71:242768..244125 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	930166.CD58_16605
ProteomeId	EsuBft888_4
Protein domains	G3DSA
Protein domains	SSF51556
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	1236\|Gammaproteobacteria
Length	125
Hectar predicted targeting category	other localisation
Evalue	2.07e-09
EggNOG OGs	COG3618@1\|root,COG3618@2\|Bacteria,1R5V9@1224\|Proteobacteria,1SNQW@1236\|Gammaproteobacteria
Ec32 ortholog description	Amidohydrolase 2
Ec32 ortholog	Ec-02_004450.1
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Amidohydrolase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft888_4a	EsuBft888_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_71 242768..244125 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft888_4a-0001-exon	EsuBft888_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_71 242768..242810 +
EsuBft888_4a-0001-exon	agat-exon-81901	Ectocarpus subulatus male Bft15b	exon	Scaffold_71 242911..244125 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft888_4a-0001-cds	EsuBft888_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_71 242768..242810 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft888_4a-0001-exon	agat-three_prime_utr-22714	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_71 243309..244125 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft888_4a-0001	EsuBft888_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_71 242768..243308 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_71:242768..244125+
coding sequence from alignment at Scaffold_71:242768..244125+

spliced messenger RNA

>EsuBft888_4a-0001 ID=EsuBft888_4a-0001|Name=EsuBft888_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1258bp|location=Sequence derived from alignment at Scaffold_71:242768..244125+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGTTGAATATGGGACATGGATCTACGGAGATTGCAGTTGCTTGGGA
GCGCTGCTACAAGTTCAACGGAACGGATCAAGACCTGTTCGCGTGCCCTC
AGTCCCCTGGGAAGAAGGCCTGCTACATCCCGGCGGGCGTCCTGCCGTTC
CCGAAGCTCGAGGAGAATTGGCGCAGCAACAACGTTTCCTACGGCGTTTT
GGTGCAGCCGTCGTTTCTGGGAGTGGACAATAACTACCTCGTGCGACAGC
TGCGCGAACACCCGTGGCTTCAGGGGGTCATCGGCGTCACGAACGCGGAC
GGGACGCTGGACTCCGACGCGGTCAGCCCGCCGTTGCTCGAGGACATGCA
CAGGGTCGGCGTGCGCGGTGTCCGCCTGAACCTTACTAAGAAGTCCGAGG
AGGAGGACATCACGCGCCTCAACGCCGCAAACGGGAGCTGACGGTTTCGT
GAATCTGTGGGCGTTTATTAAGGAGCACGGCTGGCATATCGAGGCGCAGC
AGGAGAGCGACGGTTGGGTCGACCTAATCGAAACCCTTGTCGGCAAACGA
AAAAGATTTGTAACAACAGGATTCGGTCCGTTTGTGGCTCGTAATTGAAA
ATATCTCGGCTGTGCCCCAACTTTGGGCGGAAAATTTACGTCGAGGTTTG
GGGTGAACGAGAGTTTTCGGGGAAAAAATGAAGATAACGACGTGAGCACT
ACTTTGTCATCGCACACGCATGCATGTGTATGTCAGCCACCATGCCGCCA
CAACAACCAACCGCGTTCTGGGCAGGTCTCGCACACTCTTGGTTTGTTAC
TCAGAAACCGCGTCTGTCTCCAGAAAGAGATTCTCTTTTGCATGCATATG
GTCAGTCTGGGACAATTTAGACTATCCATTATTATTATTATTATTATTTT
GTTTGCCCTCCGACAATTGCAGATAAAAGCAGACATACATAAAAAGTCGA
TCGTCAAGGCCGTCATGCCAAGCCAAATTAACTCGATGCCCAATAGCTAG
GAATGTTTGCCTCTAAGTCAACAAAACTTTGGTCGAAACACTACAACAGC
TGAACTCTAGGCACGAACCTTCGAGAAAAACGAACAAAACCCCAACCTCA
TCCACCCGAAATCAAACAAAACTCGGCCCCGTCTTCCCTGGTACCCCTGA
CACCGTATTGAACATAAATCCGCTTTCCACCGAAGTGGTTAGGTTAAAGC
TGTCGCACGCATATTTCGGCGCGCAAAAGTCTGTGCGGCATTGTTGATCG
ATATTGCC

protein sequence of EsuBft888_4a-0001

>EsuBft888_4 ID=EsuBft888_4|Name=EsuBft888_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=146bp
MWLNMGHGSTEIAVAWERCYKFNGTDQDLFACPQSPGKKACYIPAGVLPF
PKLEENWRSNNVSYGVLVQPSFLGVDNNYLVRQLREHPWLQGVIGVTNAD
GTLDSDAVSPPLLEDMHRVGVRGVRLNLTKKSEEEDITRLNAANGS

mRNA from alignment at Scaffold_71:242768..244125+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft888_4a-0001 ID=EsuBft888_4a-0001|Name=EsuBft888_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1358bp|location=Sequence derived from alignment at Scaffold_71:242768..244125+ (Ectocarpus subulatus male Bft15b)
ATGTGGTTGAATATGGGACATGGATCTACGGAGATTGCAGTTGGTAGATC
GCGGAGGAACAGGGAGTTTCTGCTTGGTTTCTTCGGAGATTCGATGAGTG
ATCTGAATTGCGTGACGGNAGCTTTATAGACACCCACACGCAGCTTGGGA
GCGCTGCTACAAGTTCAACGGAACGGATCAAGACCTGTTCGCGTGCCCTC
AGTCCCCTGGGAAGAAGGCCTGCTACATCCCGGCGGGCGTCCTGCCGTTC
CCGAAGCTCGAGGAGAATTGGCGCAGCAACAACGTTTCCTACGGCGTTTT
GGTGCAGCCGTCGTTTCTGGGAGTGGACAATAACTACCTCGTGCGACAGC
TGCGCGAACACCCGTGGCTTCAGGGGGTCATCGGCGTCACGAACGCGGAC
GGGACGCTGGACTCCGACGCGGTCAGCCCGCCGTTGCTCGAGGACATGCA
CAGGGTCGGCGTGCGCGGTGTCCGCCTGAACCTTACTAAGAAGTCCGAGG
AGGAGGACATCACGCGCCTCAACGCCGCAAACGGGAGCTGACGGTTTCGT
GAATCTGTGGGCGTTTATTAAGGAGCACGGCTGGCATATCGAGGCGCAGC
AGGAGAGCGACGGTTGGGTCGACCTAATCGAAACCCTTGTCGGCAAACGA
AAAAGATTTGTAACAACAGGATTCGGTCCGTTTGTGGCTCGTAATTGAAA
ATATCTCGGCTGTGCCCCAACTTTGGGCGGAAAATTTACGTCGAGGTTTG
GGGTGAACGAGAGTTTTCGGGGAAAAAATGAAGATAACGACGTGAGCACT
ACTTTGTCATCGCACACGCATGCATGTGTATGTCAGCCACCATGCCGCCA
CAACAACCAACCGCGTTCTGGGCAGGTCTCGCACACTCTTGGTTTGTTAC
TCAGAAACCGCGTCTGTCTCCAGAAAGAGATTCTCTTTTGCATGCATATG
GTCAGTCTGGGACAATTTAGACTATCCATTATTATTATTATTATTATTTT
GTTTGCCCTCCGACAATTGCAGATAAAAGCAGACATACATAAAAAGTCGA
TCGTCAAGGCCGTCATGCCAAGCCAAATTAACTCGATGCCCAATAGCTAG
GAATGTTTGCCTCTAAGTCAACAAAACTTTGGTCGAAACACTACAACAGC
TGAACTCTAGGCACGAACCTTCGAGAAAAACGAACAAAACCCCAACCTCA
TCCACCCGAAATCAAACAAAACTCGGCCCCGTCTTCCCTGGTACCCCTGA
CACCGTATTGAACATAAATCCGCTTTCCACCGAAGTGGTTAGGTTAAAGC
TGTCGCACGCATATTTCGGCGCGCAAAAGTCTGTGCGGCATTGTTGATCG
ATATTGCC

Coding sequence (CDS) from alignment at Scaffold_71:242768..244125+

>EsuBft888_4a-0001 ID=EsuBft888_4a-0001|Name=EsuBft888_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=441bp|location=Sequence derived from alignment at Scaffold_71:242768..244125+ (Ectocarpus subulatus male Bft15b)
ATGTGGTTGAATATGGGACATGGATCTACGGAGATTGCAGTTGCTTGGGA
GCGCTGCTACAAGTTCAACGGAACGGATCAAGACCTGTTCGCGTGCCCTC
AGTCCCCTGGGAAGAAGGCCTGCTACATCCCGGCGGGCGTCCTGCCGTTC
CCGAAGCTCGAGGAGAATTGGCGCAGCAACAACGTTTCCTACGGCGTTTT
GGTGCAGCCGTCGTTTCTGGGAGTGGACAATAACTACCTCGTGCGACAGC
TGCGCGAACACCCGTGGCTTCAGGGGGTCATCGGCGTCACGAACGCGGAC
GGGACGCTGGACTCCGACGCGGTCAGCCCGCCGTTGCTCGAGGACATGCA
CAGGGTCGGCGTGCGCGGTGTCCGCCTGAACCTTACTAAGAAGTCCGAGG
AGGAGGACATCACGCGCCTCAACGCCGCAAACGGGAGCTGA