EsuBft888_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft888_3a-0001
Unique Name	EsuBft888_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_71	contig	Scaffold_71:240439..242738 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft888_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	230
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft888_3a	EsuBft888_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_71 240439..242738 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft888_3a-0001-exon	EsuBft888_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_71 240439..242738 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft888_3a-0001-cds	EsuBft888_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_71 240439..240588 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft888_3a-0001-exon	agat-three_prime_utr-22713	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_71 240589..242738 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft888_3a-0001	EsuBft888_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_71 240439..240588 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_71:240439..242738+
coding sequence from alignment at Scaffold_71:240439..242738+

spliced messenger RNA

>EsuBft888_3a-0001 ID=EsuBft888_3a-0001|Name=EsuBft888_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2300bp|location=Sequence derived from alignment at Scaffold_71:240439..242738+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGATCTAAATTGCGTGACGGATACTTGTGGTGACACACTCTTCGG
CATCTCGGCCTCGAGTGGTCTCTGCCCTTCCCTCTTCCCTCTAATACAAG
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGGATTGGTACCATGCC
CAGAAGCGTTTTACCTGCGAAGTGGGCATGAAACGTATACTTTGGTTTGT
GTTCGAAAGTTTGTGTATTTTTGGTAGGATTCGTAGTCGGATGAACGTAG
TCGGATGCACAACGGAGGAGGCGATTTTCTACGAATTGATCCGTGCTTTG
GAAAGAAAATGAAGAGGAGTTCCACAGACAGGTTTGACTCGATGGATTGT
TTAAGGCTTTCAGTTGTGCGAGGGACATAAGTACTTTGCGGGTGTCTTTG
TGGCTAAGTGCTGAGAAAGGATGTACCAGCAAAAGAGCGTTTTGCAGAGA
AGAATGAAGGCGACGGGACAAGACTTTATGGGTTCAGGAACTTTTGCATG
ATCGACTTCTTGTTTTTGTCATGGAGGAGTGGGATCCACGTTTTGGTCGT
AAATGGAATTGTGATCATTTGTGGGATCATTACGATGCATACGAGCAGGG

protein sequence of EsuBft888_3a-0001

>EsuBft888_3 ID=EsuBft888_3|Name=EsuBft888_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MSDLNCVTDTCGDTLFGISASSGLCPSLFPLIQDFPISALTXXXXXXXXX

mRNA from alignment at Scaffold_71:240439..242738+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft888_3a-0001 ID=EsuBft888_3a-0001|Name=EsuBft888_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2300bp|location=Sequence derived from alignment at Scaffold_71:240439..242738+ (Ectocarpus subulatus male Bft15b)
ATGAGTGATCTAAATTGCGTGACGGATACTTGTGGTGACACACTCTTCGG
CATCTCGGCCTCGAGTGGTCTCTGCCCTTCCCTCTTCCCTCTAATACAAG
ACTTTCCCATCTCGGCCCTCACTGNNNNNNNNNNNNNNNNNNNNNNNNNN
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CAGAAGCGTTTTACCTGCGAAGTGGGCATGAAACGTATACTTTGGTTTGT
GTTCGAAAGTTTGTGTATTTTTGGTAGGATTCGTAGTCGGATGAACGTAG
TCGGATGCACAACGGAGGAGGCGATTTTCTACGAATTGATCCGTGCTTTG
GAAAGAAAATGAAGAGGAGTTCCACAGACAGGTTTGACTCGATGGATTGT
TTAAGGCTTTCAGTTGTGCGAGGGACATAAGTACTTTGCGGGTGTCTTTG
TGGCTAAGTGCTGAGAAAGGATGTACCAGCAAAAGAGCGTTTTGCAGAGA
AGAATGAAGGCGACGGGACAAGACTTTATGGGTTCAGGAACTTTTGCATG
ATCGACTTCTTGTTTTTGTCATGGAGGAGTGGGATCCACGTTTTGGTCGT
AAATGGAATTGTGATCATTTGTGGGATCATTACGATGCATACGAGCAGGG

Coding sequence (CDS) from alignment at Scaffold_71:240439..242738+

>EsuBft888_3a-0001 ID=EsuBft888_3a-0001|Name=EsuBft888_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_71:240439..242738+ (Ectocarpus subulatus male Bft15b)
ATGAGTGATCTAAATTGCGTGACGGATACTTGTGGTGACACACTCTTCGG
CATCTCGGCCTCGAGTGGTCTCTGCCCTTCCCTCTTCCCTCTAATACAAG
ACTTTCCCATCTCGGCCCTCACTGNNNNNNNNNNNNNNNNNNNNNNNNNN