EsuBft888_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft888_2a-0001
Unique Name	EsuBft888_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_71	contig	Scaffold_71:235702..238344 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft888_2
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	264
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft888_2a	EsuBft888_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_71 235702..238344 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft888_2a-0001-exon	EsuBft888_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_71 235702..238344 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft888_2a-0001-exon	agat-three_prime_utr-22712	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_71 235702..238194 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft888_2a-0001-cds	EsuBft888_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_71 238195..238344 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft888_2a-0001	EsuBft888_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_71 238195..238344 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_71:235702..238344-
coding sequence from alignment at Scaffold_71:235702..238344-

spliced messenger RNA

>EsuBft888_2a-0001 ID=EsuBft888_2a-0001|Name=EsuBft888_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2643bp|location=Sequence derived from alignment at Scaffold_71:235702..238344- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTGGCTAACCCGGGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNACTGTACGTCCGCAGACACATTCTGAC
AGCACTTCAGACAGCAGCTTTGTGCCCCGCCAGCTTCTTGTTCCATGCCT
ACCATGGTGTTTTTGTACAGACAGCACTTCAGACAGCAGTATGCTGTAGT
CGGCAATCTTCCGTTTTGGTATAGAGTGGGACAGGGAGGGAGTGATGCTA
CTGTAGTCGAACGGTGGGACGGACGTGCAGTTCAGTTTTTGGGCACGCAT
ACGGTGCTGCAGGGATTTTTAGGTGTACCTCTTCGGGCTCTTGGATATCT
TTTTCTCGTTACATGTGTGCGTGTTCTTTAGATCCTCAGATGGCTCTAGT
ACTTTCGTGACCACGGGCTGAGAGTCTTTTGCTAGATTTTGGCATTTTGC
AACTGACATACGGTTTAATGTGAAGACAACAACAACAACAACAGGTGTTG
TGTGTGTGTGAAGACGTCACTGGTTTTGTAGAGAGACGCGGCAGAGATGG
CGCGAATAACCCGGGTGCCTTGTTGTGTACCTGCATCGTGGAAGACCCCT
TCAATGTGGAACGACTGCTAGTCAGTGTCGATGTTTACACTGCTGTGCCT
AACACTCAACACAGATGATCTGGATCGATTCGGGTGATTGTCAATTGCAA
TGATAGCTTTGGTTGGGTGTTCTTCTTAATTGTATGTCCACGGACTCATT
CTGACAGCACTTCAGACAGCAGCTCCATGCCCCGAGCTTGTGTACCATGC
ACCATATGGTGTTATTATTGTACAGACAGCACTTCAGACAGCAGTACGCT
GTAGTAGTCGACAAACATTCATTTTGGTTAAATGCGGGACAAGGGGGGTG
ATGCTGCTTGCTGCTGTAGTCGATTTGTAGTGTGTGGGCGTGTAGTTCAG
TTGTGAGCACGCAAACGTGCTGCAGGGATTGCAGGTGTACCTCCTCGGGC
TTGCGTACCCTTTCCTTGCTAGTAGTGTGTGTGTTCTTTAGATCTTCTGA
TGGCTCTAGCATTTTTGTGACCACGGACCGAGTCTTTCTTTGCTCGATTT
TGGGATTAGCAACTGACACCAGTTAATGTGAAGAAAAACAACA

protein sequence of EsuBft888_2a-0001

>EsuBft888_2 ID=EsuBft888_2|Name=EsuBft888_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MAWLTRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

mRNA from alignment at Scaffold_71:235702..238344-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft888_2a-0001 ID=EsuBft888_2a-0001|Name=EsuBft888_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2643bp|location=Sequence derived from alignment at Scaffold_71:235702..238344- (Ectocarpus subulatus male Bft15b)
ATGGCGTGGCTAACCCGGGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNACTGTACGTCCGCAGACACATTCTGAC
AGCACTTCAGACAGCAGCTTTGTGCCCCGCCAGCTTCTTGTTCCATGCCT
ACCATGGTGTTTTTGTACAGACAGCACTTCAGACAGCAGTATGCTGTAGT
CGGCAATCTTCCGTTTTGGTATAGAGTGGGACAGGGAGGGAGTGATGCTA
CTGTAGTCGAACGGTGGGACGGACGTGCAGTTCAGTTTTTGGGCACGCAT
ACGGTGCTGCAGGGATTTTTAGGTGTACCTCTTCGGGCTCTTGGATATCT
TTTTCTCGTTACATGTGTGCGTGTTCTTTAGATCCTCAGATGGCTCTAGT
ACTTTCGTGACCACGGGCTGAGAGTCTTTTGCTAGATTTTGGCATTTTGC
AACTGACATACGGTTTAATGTGAAGACAACAACAACAACAACAGGTGTTG
TGTGTGTGTGAAGACGTCACTGGTTTTGTAGAGAGACGCGGCAGAGATGG
CGCGAATAACCCGGGTGCCTTGTTGTGTACCTGCATCGTGGAAGACCCCT
TCAATGTGGAACGACTGCTAGTCAGTGTCGATGTTTACACTGCTGTGCCT
AACACTCAACACAGATGATCTGGATCGATTCGGGTGATTGTCAATTGCAA
TGATAGCTTTGGTTGGGTGTTCTTCTTAATTGTATGTCCACGGACTCATT
CTGACAGCACTTCAGACAGCAGCTCCATGCCCCGAGCTTGTGTACCATGC
ACCATATGGTGTTATTATTGTACAGACAGCACTTCAGACAGCAGTACGCT
GTAGTAGTCGACAAACATTCATTTTGGTTAAATGCGGGACAAGGGGGGTG
ATGCTGCTTGCTGCTGTAGTCGATTTGTAGTGTGTGGGCGTGTAGTTCAG
TTGTGAGCACGCAAACGTGCTGCAGGGATTGCAGGTGTACCTCCTCGGGC
TTGCGTACCCTTTCCTTGCTAGTAGTGTGTGTGTTCTTTAGATCTTCTGA
TGGCTCTAGCATTTTTGTGACCACGGACCGAGTCTTTCTTTGCTCGATTT
TGGGATTAGCAACTGACACCAGTTAATGTGAAGAAAAACAACA

Coding sequence (CDS) from alignment at Scaffold_71:235702..238344-

>EsuBft888_2a-0001 ID=EsuBft888_2a-0001|Name=EsuBft888_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_71:235702..238344- (Ectocarpus subulatus male Bft15b)
ATGGCGTGGCTAACCCGGGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN