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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 164328.Phyra85923 |
| ProteomeId | EsuBft887_8 |
| Protein domains | IPR013103 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 4776|Peronosporales |
| Length | 3762 |
| Hectar predicted targeting category | other localisation |
| Evalue | 8.7e-33 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | transposition, RNA-mediated |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0003824 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft887_8a-0001 ID=EsuBft887_8a-0001|Name=EsuBft887_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3762bp|location=Sequence derived from alignment at Scaffold_443:222328..226651- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TCTTGGTTTCGAGCCTTGTGCCGCCGATGCGTGTGTGATGCGTCTGATCG AGAGCGGTGTAGTCACCATGGTGGTTGTGATCCACGTAGACGACATCTTC TCTATCGGGCTCAAGAGCAGGTGCGATCAGTTTGGTGTTGACCTCAACCG GTATGTGCCCATTTCCAACCTTGGGGAACTGCGATGGTATACGGGTTGCC GGTTTTCTCGTGACACGGTGTTGGGGACGGTGTCTATTTCGCAACAGGCT GTAGCGGAGAAGATCGTTGCCAAGTTCGGTGTGACGACGGACAAAGAGAC ACCTATGGTCGTTGGGTTGAAGCTTGAGCAGTACGACGCCGTCGAGCCCG ATGTCGACGAGCCTTTCCGGTCGCTAGTGGGACACTTGATGTGGCTGGCG AATCAGACTCGCCCGGATATTCTCAACGCGGTGCGTGCCGTTGCGAGGTA TTCGCACGCGCCGAAGCGACTGCACTGGGAGGCGGCTTTGCATGTTTTGA TGTATGTTAGATTCACGAGCGGGTACGGGATTACTTTTCAGAGGGGCACG GTGGGAGGAGACCACATGGAACTTTTTGTCGATTCGGACTTCGCCAACAA GGCAACCGACCGGCGGTCTGTTTCTGGGGCACTAGTGATGTTCGCTGGCG CTATTCACTTGGCAAGTAACCCGGCTACTACTCCCAATTCGAAGCACATC GACATCCGCCACCATTTCATCCGTGAGCGTTTAGCGCGGGGGGAGTTCAA GGTAGTCCACGTACGGTCGGACCTGCAACGCGCGGATTTCTTGACCAAAC CGCTCCCCAAGGAGACTTTTTGCGCGCAGCGAGACTTCGTGATGAATATT CGTTGATTTTGTTCTTGGTGTTGCACTATTTCAGCGATGGGGCCTTTCTT GCACCATGTGTTTTATTTGTGACCTGGTACTGGCCTTTGATCTGCTGCTC GATGTTGATTTCTGCTTTCGCGATGGATGGGATAGTTCTGCGTGAGAATC ATGGGGGGGGAAGTATTGTTCCATGATCCTAGTCGCAGGTGGTTTGTCTT GGTTTTGATTTTTTTCGGGATGAATGATGCAGCAGGGGGGCTGTTGGATT GATTGATTGATTTGATTTTGACTTCATGTATGTATGTTCAGGATGGAATG GATGTTACAGCAGGGGGGCTGGTGGAGTGATTTGTTTGTCAAGGTGTTGG ATGTCGGAGAGAGGGTTTGGCATGTTCTTGTAATTTGAACTGGCCATTGA GTTGAAACATGAATATTCATCTGAGGAATAATTTGTTCTGAGTAGTCAGG ACGTAAGACACGTTTTCCCGGGGTTACCNACGTTTTCCCGGAGTTACCCG TCCTCCCCGTTCTGACGTGATTCTGATGTAATGTTGATCTTTTTGCTGGG TATTTTTCCAAGGGTGATTGTTCGTGTTTTGACTGCTTGAGAATTGGGTT GAGCACTTTTCTCGAGAGGGTAATTTGTTTTTCTTGACAGACCTTTTAGG GGTAGAAATTTGACATCAAAAAGGTTTGAAAGCTTTGCAGGACGTGTTTT GTTGGAAGATCCGGCGATTTCGTGGGACATGTTCTATTGGCAGAGTCGTT TGGATTGGAATGAGTGGTGGATGATTTATTGTTAGCATAGGGGTTTTTGG TTTTTCTGTCTGCCGTTTTGTCTGGCAATGATAGTCGTGTCGGGGATTTC GTAGATCGTATCTCGTACCGAGCAGGGGGGCTGTTTGGGGTGCTCGGCAG AGTATACTGTCTACGGGGCCTCCGGGGGGTACGCGGATGGAATGTATTGA CGGACATGCTGCATGGCGATGGTGTGGCCTACCGCATGTCTCTCACTCTC TAAGCAACAAGGTCTTGAGTCAACCTTCTTTCTCGATCGGCCTCTGACGA GCTACCACACCCAAACAAGTCCCAAACTTGTGTTTCCCCACCTTCGAAAA ACAACAGGATTGGGGGGCGGAAAACGCTGGTCTGTCGCTACAGTAGTCTG CCGCCACGAACTCTACGTAGGGTGGCCAAGCTGCTGCTGTCCTTTCGTCT CTTCACTTGCTCCTTAGCTTCCGTTCTTCCTCTACACGACTTGCTACAGA TGCAGTTCTTCAACTCCTTCTGTTCGACGAAAAAATTATTCTTTCATTGC TACAGAAGTGCTTGTTTGTGGCACTTGGATATGAGTACGATCTGTGCATC CTCCTTGGGGGATACTCGTATGGGAAGTATGGGTGTGATGGGTATGTATG CAGTTGGAGTTCAAGTGCGGCCCCCCCGGGTGATCACACGGCGGTGTGCT CCCGGCACTTGCCTGAGGGGCTTAGGTGTTGGTGACCAGCTTGCATGAGG GGCTTGCGTGACGAGTAATATATATAGTCATTTTCTTCATCTGCTGTTAC TGGGAATACATAGTACCTAGTCTCAACACCACAGACCGCTGAGGGCGGCA GTGCACACTAACACGATATGACTATATTCTGGAGCCTAGCTAGGCCAGGT GTTGGTTCGGCGATGACGGAAAGAGAGCGAAAGTTAGAAGAACGAGCGAG GAATGCCGAGAGAGAAGCCGAGGAAGCGGCAGCCAAGATGGCGGAAATGC AGAGAAGAATAGATGAAGCGGAAGAGAGGAGTTCAGCGGAGGAAGCTGCG AGAGGAAGAGTGGGTGATGCTGGGCATGCAGCAGGTAACATGAGGATAAG CGGCGCTGTCTATGCGCCTGGGTACCATAGCAGGGATGGAGCTGCCGGAG GGGCGGCTACTTTTGGAGCTGGGGGGACGACTGGTTTTTTCGATGATCGG AGGCAGCAGCAGCGTGACCGCGATTACGTGCGGAAGGACCGGAAGCCACC GGTATACGACGGCAACTTCCCACTGTTCAAGTCGCTGTTCGAGCTCTTGC TCGCCCGCGAAGATCTATCACACACACTCGCCAAACCGGCCGTCCAGACC AACGCATCTGGCTCCTCAACGGGCTGCCAAGGAGCAAAAACGTCTGCTTG CACGGTGAGCGTCGCGTGCACGATCATGAGTATGCTTTTGAGTACTTGAT GCGCGCCACGAAGCGGGCAAACTTGCAGGCTAGAATCCTTGCCGTTGGGA CTGTGTCTAGGGCTTGGGAGGCTGTACAACAGTTCTGCCTGCCAATGAGT AACTTCGAGCAGGAGGCACTGAAGCTGTCTCTCACGAACATGAAGATGCA GCTTGGAGAGGACCCAAAGGAGTACTTGCTCAGGTTCGACAGGGTGTTGT CTACTCTCCGCGCCGTCAACGGCGATGCGATCACGGATAGAGAAGTCCTC GCGATGCTTCGAAGGAACCTCTCCGCCGACTACGAACAGGTCCACATTCT CTTCATGGCCAACAGCTCGCTCACGCGCAAGAACTTGGAGAATCTTGTGC GTAGCCTCTACGCCGAGAGAGACCTCGGGAATGTTGCGCGGCGGACGGCA GCGCCGACCGGTGACCCGCGCGCTCTTCATGTCGGCGGTGGAAATTTTCG GCGCGACTGTTGGGGAGGTTTTTGTCGTCAACAGCAGCATGGTCTGCAGC CGTCCTGCGGAGGTGTTCACGTACAGCAACCGTTGCAGCAGCAGTGGAGG TACGGCGTGTTTGGCAGAGGGTGTACTTTTCAGCAGCAGCAACAACAACC GTGCGTGCAGCAGAGGTTCGTGCCACAGCCATCGGTGCAGCAGCAGCCCA TGCCACAGCAGCAAGCGCCGTCCCCGACAGCAGCATCGGCGCTGCAGCAG CGGGGACAGCGG back to topprotein sequence of EsuBft887_8a-0001 >EsuBft887_8 ID=EsuBft887_8|Name=EsuBft887_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=272bp
MRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRW YTGCRFSRDTVLGTVSISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYD AVEPDVDEPFRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAA LHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALV MFAGAIHLASNPATTPNSKHIDIRHHFIRERLARGEFKVVHVRSDLQRAD FLTKPLPKETFCAQRDFVMNIR back to topmRNA from alignment at Scaffold_443:222328..226651- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft887_8a-0001 ID=EsuBft887_8a-0001|Name=EsuBft887_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4324bp|location=Sequence derived from alignment at Scaffold_443:222328..226651- (Ectocarpus subulatus male Bft15b) TCTTGGTTTCGAGCCTTGTGCCGCCGATGCGTGTGTGATGCGTCTGATCG
AGAGCGGTGTAGTCACCATGGTGGTTGTGATCCACGTAGACGACATCTTC
TCTATCGGGCTCAAGAGCAGGTGCGATCAGTTTGGTGTTGACCTCAACCG
GTATGTGCCCATTTCCAACCTTGGGGAACTGCGATGGTATACGGGTTGCC
GGTTTTCTCGTGACACGGTGTTGGGGACGGTGTCTATTTCGCAACAGGCT
GTAGCGGAGAAGATCGTTGCCAAGTTCGGTGTGACGACGGACAAAGAGAC
ACCTATGGTCGTTGGGTTGAAGCTTGAGCAGTACGACGCCGTCGAGCCCG
ATGTCGACGAGCCTTTCCGGTCGCTAGTGGGACACTTGATGTGGCTGGCG
AATCAGACTCGCCCGGATATTCTCAACGCGGTGCGTGCCGTTGCGAGGTA
TTCGCACGCGCCGAAGCGACTGCACTGGGAGGCGGCTTTGCATGTTTTGA
TGTATGTTAGATTCACGAGCGGGTACGGGATTACTTTTCAGAGGGGCACG
GTGGGAGGAGACCACATGGAACTTTTTGTCGATTCGGACTTCGCCAACAA
GGCAACCGACCGGCGGTCTGTTTCTGGGGCACTAGTGATGTTCGCTGGTG
CGTGTGTGATGTATCTGTGTAGGACGCAGAAGAGCGTCACCCTGTCTTCG
ACGGAAGCGGAGTNTGCGGTATCTGCGGAAATTTATTTTTCCGGGCCGTG
ATGTGGGGTGCACGCCGGTGTGGGAGGACAACGTAGGCGCTATTCACTTG
GCAAGTAACCCGGCTACTACTCCCAATTCGAAGCACATCGACATCCGCCA
CCATTTCATCCGTGAGCGTTTAGCGCGGGGGGAGTTCAAGGTAGTCCACG
TACGGTCGGACCTGCAACGCGCGGATTTCTTGACCAAACCGCTCCCCAAG
GAGACTTTTTGCGCGCAGCGAGACTTCGTGATGAATATTCGTTGATTTTG
TTCTTGGTGTTGCACTATTTCAGCGATGGGGCCTTTCTTGCACCATGTGT
TTTATTTGTGACCTGGTACTGGCCTTTGATCTGCTGCTCGATGTTGATTT
CTGCTTTCGCGATGGATGGGATAGTTCTGCGTGAGAATCATGGGGGGGGA
AGTATTGTTCCATGATCCTAGTCGCAGGTGGTTTGTCTTGGTTTTGATTT
TTTTCGGGATGAATGATGCAGCAGGGGGGCTGTTGGATTGATTGATTGAT
TTGATTTTGACTTCATGTATGTATGTTCAGGATGGAATGGATGTTACAGC
AGGGGGGCTGGTGGAGTGATTTGTTTGTCAAGGTGTTGGATGTCGGAGAG
AGGGTTTGGCATGTTCTTGTAATTTGAACTGGCCATTGAGTTGAAACATG
AATATTCATCTGAGGAATAATTTGTTCTGAGTAGTCAGGACGTAAGACAC
GTTTTCCCGGGGTTACCNACGTTTTCCCGGAGTTACCCGTCCTCCCCGTT
CTGACGTGATTCTGATGTAATGTTGATCTTTTTGCTGGGTATTTTTCCAA
GGGTGATTGTTCGTGTTTTGACTGCTTGAGAATTGGGTTGAGCACTTTTC
TCGAGAGGGTAATTTGTTTTTCTTGACAGACCTTTTAGGGGTAGAAATTT
GACATCAAAAAGGTTTGAAAGCTTTGCAGGACGTGTTTTGTTGGAAGATC
CGGCGATTTCGTGGGACATGTTCTATTGGCAGAGTCGTTTGGATTGGAAT
GAGTGGTGGATGATTTATTGTTAGCATAGGGGTTTTTGGTTTTTCTGTCT
GCCGTTTTGTCTGGCAATGATAGTCGTGTCGGGGATTTCGTAGATCGTAT
CTCGTACCGAGCAGGGGGGCTGTTTGGGGTGCTCGGCAGAGTATACTGTC
TACGGGGCCTCCGGGGGGTACGCGGATGGAATGTATTGACGGACATGCTG
CATGGCGATGGTGTGGCCTACCGCATGTCTCTCACTCTCTAAGCAACAAG
GTCTTGAGTCAACCTTCTTTCTCGATCGGCCTCTGACGAGCTACCACACC
CAAACAAGTCCCAAACTTGTGTTTCCCCACCTTCGAAAAACAACAGGATT
GGGGGGCGGAAAACGCTGGTCTGTCGCTACAGTAGTCTGCCGCCACGAAC
TCTACGTAGGGTGGCCAAGCTGCTGCTGTCCTTTCGTCTCTTCACTTGCT
CCTTAGCTTCCGTTCTTCCTCTACACGACTTGCTACAGATGCAGTAAGTT
CTCTTCCACGGAGTGACAGAAATAATAACGGAGGATATTTTTCCTTTGGT
GATGCCAGGTTTCCAAAAGATAAAGGATTCCTACATCCTTCCGGGTCGCA
ATAAGTGTCAGGTTCTTCAACTCCTTCTGTTCGACGAAAAAATTATTCTT
TCATTGCTACAGAAGTGCTTGTTTGTGGCACTTGGATATGAGTACGATCT
GTGCATCCTCCTTGGGGGATACTCGTATGGGAAGTATGGGTGTGATGGGT
ATGTATGCAGTTGGAGTTCAAGTGCGGCCCCCCCGGGTGATCACACGGCG
GTGTGCTCCCGGCACTTGCCTGAGGGGCTTAGGTGTTGGTGACCAGCTTG
CATGAGGGGCTTGCGTGACGAGTAATATATATAGTCATTTTCTTCATCTG
CTGTTACTGGGAATACATAGTACCTAGTCTCAACACCACAGACCGCTGAG
GGCGGCAGTGCACACTAACACGATATGACTATATTCTGGAGCCTAGCTAG
GCCAGGTGTTGGTTCGGCGATGACGGAAAGAGAGCGAAAGTTAGAAGAAC
GAGCGAGGAATGCCGAGAGAGAAGCCGAGGAAGCGGCAGCCAAGATGGCG
GAAATGCAGAGAAGAATAGATGAAGCGGAAGAGAGGAGTTCAGCGGAGGA
AGCTGCGAGAGGAAGAGTGGGTGATGCTGGGCATGCAGCAGGTAACATGA
GGATAAGCGGCGCTGTCTATGCGCCTGGGTACCATAGCAGGGATGGAGCT
GCCGGAGGGGCGGCTACTTTTGGAGCTGGGGGGACGACTGGTTTTTTCGA
TGATCGGAGGCAGCAGCAGCGTGACCGCGATTACGTGCGGAAGGACCGGA
AGCCACCGGTATACGACGGCAACTTCCCACTGTTCAAGTCGCTGTTCGAG
CTCTTGCTCGCCCGCGAAGATCTATCACACACACTCGCCAAACCGGCCGT
CCAGACCAACGCATCTGGCTCCTCAACGGGCTGCCAAGGAGCAAAAACGT
CTGCTTGCACGGTGAGCGTCGCGTGCACGATCATGAGTATGCTTTTGAGT
ACTTGATGCGCGCCACGAAGCGGGCAAACTTGCAGGCTAGAATCCTTGCC
GTTGGGACTGTGTCTAGGGCTTGGGAGGCTGTACAACAGTTCTGCCTGCC
AATGAGTAACTTCGAGCAGGAGGCACTGAAGCTGTCTCTCACGAACATGA
AGATGCAGCTTGGAGAGGACCCAAAGGAGTACTTGCTCAGGTTCGACAGG
GTGTTGTCTACTCTCCGCGCCGTCAACGGCGATGCGATCACGGATAGAGA
AGTCCTCGCGATGCTTCGAAGGAACCTCTCCGCCGACTACGAACAGGTCC
ACATTCTCTTCATGGCCAACAGCTCGCTCACGCGCAAGAACTTGGAGAAT
CTTGTGCGTAGCCTCTACGCCGAGAGAGACCTCGGGAATGTTGCGCGGCG
GACGGCAGCGCCGACCGGTGACCCGCGCGCTCTTCATGTCGGCGGTGGAA
ATTTTCGGCGCGACTGTTGGGGAGGTTTTTGTCGTCAACAGCAGCATGGT
CTGCAGCCGTCCTGCGGAGGTGTTCACGTACAGCAACCGTTGCAGCAGCA
GTGGAGGTACGGCGTGTTTGGCAGAGGGTGTACTTTTCAGCAGCAGCAAC
AACAACCGTGCGTGCAGCAGAGGTTCGTGCCACAGCCATCGGTGCAGCAG
CAGCCCATGCCACAGCAGCAGTCGCCGCGTTGGCAATGGGTATACAGACG
GCCGCAGCGGCGGCGGCGGCGGCAGCATCGGCGAGCGGCGGCGGTGAGGA
CGGGTTCGGCCAGAGCGCCGTCACCGACAGCAGCATCGGCGGGAGCGGAG
GTGGTGCGGACGGTTTCGGCCAGAGCGCCGTCCCCGACAGCAGCATCGGC
GGTGGCGGGATCGGTGACGGAGGTATGTGACGAAGAGTTGGAGGAAGCGG
TTGGTGCGACAACCATGCCATTGCCAGTCCTCGAGGAGCTTGATAGCCAA
TGTGCTGGGGGGGATGTGAGCAACAGCAGCATCAGCATCAGCAGTAGCAG
CAGCTGCAGCAGCGGGGACAGCGG back to topCoding sequence (CDS) from alignment at Scaffold_443:222328..226651- >EsuBft887_8a-0001 ID=EsuBft887_8a-0001|Name=EsuBft887_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=819bp|location=Sequence derived from alignment at Scaffold_443:222328..226651- (Ectocarpus subulatus male Bft15b) ATGCGTCTGATCGAGAGCGGTGTAGTCACCATGGTGGTTGTGATCCACGT AGACGACATCTTCTCTATCGGGCTCAAGAGCAGGTGCGATCAGTTTGGTG TTGACCTCAACCGGTATGTGCCCATTTCCAACCTTGGGGAACTGCGATGG TATACGGGTTGCCGGTTTTCTCGTGACACGGTGTTGGGGACGGTGTCTAT TTCGCAACAGGCTGTAGCGGAGAAGATCGTTGCCAAGTTCGGTGTGACGA CGGACAAAGAGACACCTATGGTCGTTGGGTTGAAGCTTGAGCAGTACGAC GCCGTCGAGCCCGATGTCGACGAGCCTTTCCGGTCGCTAGTGGGACACTT GATGTGGCTGGCGAATCAGACTCGCCCGGATATTCTCAACGCGGTGCGTG CCGTTGCGAGGTATTCGCACGCGCCGAAGCGACTGCACTGGGAGGCGGCT TTGCATGTTTTGATGTATGTTAGATTCACGAGCGGGTACGGGATTACTTT TCAGAGGGGCACGGTGGGAGGAGACCACATGGAACTTTTTGTCGATTCGG ACTTCGCCAACAAGGCAACCGACCGGCGGTCTGTTTCTGGGGCACTAGTG ATGTTCGCTGGCGCTATTCACTTGGCAAGTAACCCGGCTACTACTCCCAA TTCGAAGCACATCGACATCCGCCACCATTTCATCCGTGAGCGTTTAGCGC GGGGGGAGTTCAAGGTAGTCCACGTACGGTCGGACCTGCAACGCGCGGAT TTCTTGACCAAACCGCTCCCCAAGGAGACTTTTTGCGCGCAGCGAGACTT CGTGATGAATATTCGTTGA back to top
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