EsuBft887_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft887_7a-0001
Unique NameEsuBft887_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_443contigScaffold_443:218357..220040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FN97
ProteomeIdEsuBft887_7
Protein domainsG3DSA
Protein domainsIPR016137
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2880.D7FN97|-
Length33
Hectar predicted targeting categoryother localisation
Evalue1.01e-05
EggNOG OGs2D0MX@1|root,2SERP@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRegulator of G protein signaling domain
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0038032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft887_7aEsuBft887_7aEctocarpus subulatus male Bft15bgeneScaffold_443 218357..220040 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft887_7a-0001-exonagat-exon-108783Ectocarpus subulatus male Bft15bexonScaffold_443 218357..218370 -
EsuBft887_7a-0001-exonEsuBft887_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_443 219157..219328 -
EsuBft887_7a-0001-exonagat-exon-108784Ectocarpus subulatus male Bft15bexonScaffold_443 219888..220040 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft887_7a-0001-cdsEsuBft887_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_443 218357..218370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft887_7a-0001EsuBft887_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_443 218357..220040 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft887_7a-0001 ID=EsuBft887_7a-0001|Name=EsuBft887_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=339bp|location=Sequence derived from alignment at Scaffold_443:218357..220040- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACAGGTGGAGCGATATGTTGCACACGCAGAAAAGGAATCAGCTGC
AGAACTTTTCGTCCACTTCCGAAGGATTGTCGACAAGTACATTGTCTCGG
GGTCGGAGCTGGAACTGAACATCGAGAGCGCCATGCGAAATAAAGTGCTC
GAGGTCGGGGAAAGGGTGATATTTGTGGAGGCTGGGATGGAACGGCAGAG
AGGTATCTTCAACCCTTCGAAGGAAGAAGCGCACAAGATTCTCGATGACA
ATCTGCTCCAGTCGTTTTTGACCAGCCGGAAATTTCTCGACGCCTGCCTA
CGTTGGCAGGAAGCACAAGCCGCAGGGGAGAACAAATAG
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protein sequence of EsuBft887_7a-0001

>EsuBft887_7 ID=EsuBft887_7|Name=EsuBft887_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=112bp
MPQVERYVAHAEKESAAELFVHFRRIVDKYIVSGSELELNIESAMRNKVL
EVGERVIFVEAGMERQRGIFNPSKEEAHKILDDNLLQSFLTSRKFLDACL
RWQEAQAAGENK
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mRNA from alignment at Scaffold_443:218357..220040-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft887_7a-0001 ID=EsuBft887_7a-0001|Name=EsuBft887_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1684bp|location=Sequence derived from alignment at Scaffold_443:218357..220040- (Ectocarpus subulatus male Bft15b)
ATGCCACAGGTGGAGCGATATGTTGCACACGCAGAAAAGGAATCAGCTGC
AGAACTTTTCGTCCACTTCCGAAGGATTGTCGACAAGTACATTGTCTCGG
GGTCGGAGCTGGAACTGAACATCGAGAGCGCCATGCGAAATAAAGTGCTC
GAGGTCTGTGTGATGACATTCGCACTTTTCAGCCTCCCCTTTCTCCGAAG
TTTAGCGAGGGCGTACGTCGACTGGTCTGTAGAACGAAATTCCATGTGCC
CAGGAGTACGTAAGAATATGGGGGTCGAGCGGGAGTTGACGCTGACGTGC
CTCAGCAATCGTCAACTCGAAGACGTCGTAAGTCAAGTTGGGATCGTTGT
GTAGCGGCTGGTAAGGCCTACGCCAATCTTGTTCCCGCTTCCCCGACGAT
AAAGGCGAATAGTGTTGAAGGAAGGCTTCGGTTCCGGGTGCGGGGTATGA
CAAGGCAAAGGGGCATCTGCAAGCTCCCGCAGAGATTACAATGATGCTCA
AAGAAAGGCGAACTCGCCTGATTTTGTTCTGATCGATAGTCTATCCAATC
CGTTGCTCCGCTGGTTCCCGTTACACACGGCTGTGCGTCAATAGTCTCAC
GGGTGGGTCTTGTATGGGACGTACATGCAGACCCTCCTCGAACGCCCTGA
AGTTGTCAGGGATTTGCCCGTCTCACTTCCCGTCCCCCGATGCCAATCCT
TGCTTCCGAAAGGTCGGGGAAAGGGTGATATTTGTGGAGGCTGGGATGGA
ACGGCAGAGAGGTATCTTCAACCCTTCGAAGGAAGAAGCGCACAAGATTC
TCGATGACAATCTGCTCCAGTCGTTTTTGACCAGCCGGAAATTTCTCGAC
GCCTGCCTACGTTGGCAGGAAGCACAAGCCGCAGGTAACGATGAATATTA
TGTTCTCTTTTTGCTGCACCAAATCGTCTGGAGGATATCTGTCCCTTGAT
TGCAGAGTTTGCATGCATGCTCGTCTCTCGGTTTACTTTAGTGATCTGCT
TCGTAGCGCGCTTAGATTTTTTTCCGTTTTGATTTACACACTAACCGGCG
TACCCTTTTCGAGGTAGTTGGCCTGTCACCGCTAAGGCGTCTGCGTCAAT
TGGACCGTATGGATGCTTGACGGTACGGAGCAATACGGAACCTGTCGGCC
AAAGTCGTGTTGTCGAACATGTTCATTTGCCATGACCGTGGCAGCCGGCG
TCAGCCGACGTGCCCTCCGCCGACACCCATACTCTTGCCACCGTTTTGAG
GCCAACCCGCCGAGTTCCGCGATCCGGTGTCCACGATGAACTAGTTTCAT
ATGCTGCAGACAACTCATTCCAGAATAACCTATGTAAGCGAATATGGTTT
TCTAATTTTGTTGCTTCCTTCAAATGTTATGTCGCCCCTGTTCGTGACGA
GGATAGCGGCATCCGCGTCCGACAAGAAAAGCCTATTTGGCTGGAATAGC
CACCAGGGTTCGTTTAGCGAGATTTCACGTTCGGTCGTTCGTGTACACGG
CGTAATGAGTAGAGAGATTGGCATCTCGAGGAAAAGCAACATCGGGCGAA
GACTAACGGAAAATGGGGCGTCTACCATTCGGGAAGAGATTGGGAGAGTT
GGGTCGCGTTTGGATGAACTCGCAACCCGCTCGTTGTGTCCCGTCCATGG
GCAGGAGAAGAAAAGTGCAGGGGAGAACAAATAG
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Coding sequence (CDS) from alignment at Scaffold_443:218357..220040-

>EsuBft887_7a-0001 ID=EsuBft887_7a-0001|Name=EsuBft887_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=339bp|location=Sequence derived from alignment at Scaffold_443:218357..220040- (Ectocarpus subulatus male Bft15b)
ATGCCACAGGTGGAGCGATATGTTGCACACGCAGAAAAGGAATCAGCTGC
AGAACTTTTCGTCCACTTCCGAAGGATTGTCGACAAGTACATTGTCTCGG
GGTCGGAGCTGGAACTGAACATCGAGAGCGCCATGCGAAATAAAGTGCTC
GAGGTCGGGGAAAGGGTGATATTTGTGGAGGCTGGGATGGAACGGCAGAG
AGGTATCTTCAACCCTTCGAAGGAAGAAGCGCACAAGATTCTCGATGACA
ATCTGCTCCAGTCGTTTTTGACCAGCCGGAAATTTCTCGACGCCTGCCTA
CGTTGGCAGGAAGCACAAGCCGCAGGGGAGAACAAATAG
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