EsuBft887_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft887_3a-0001
Unique NameEsuBft887_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_443contigScaffold_443:172525..177439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FMG5
ProteomeIdEsuBft887_3
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCoil
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length287
Hectar predicted targeting categorysignal anchor
Evalue6.07e-105
EggNOG OGsKOG3676@1|root,KOG3676@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptioncalcium ion transmembrane transport
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft887_3aEsuBft887_3aEctocarpus subulatus male Bft15bgeneScaffold_443 172525..177439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft887_3a-0001EsuBft887_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_443 172525..174465 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft887_3a-0001-exonagat-exon-108752Ectocarpus subulatus male Bft15bexonScaffold_443 172525..172596 +
EsuBft887_3a-0001-exonagat-exon-108751Ectocarpus subulatus male Bft15bexonScaffold_443 172947..173104 +
EsuBft887_3a-0001-exonagat-exon-108749Ectocarpus subulatus male Bft15bexonScaffold_443 173796..174003 +
EsuBft887_3a-0001-exonEsuBft887_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_443 174106..175017 +
EsuBft887_3a-0001-exonagat-exon-108750Ectocarpus subulatus male Bft15bexonScaffold_443 175918..177439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft887_3a-0001-cdsEsuBft887_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_443 172525..172596 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft887_3a-0001-exonagat-three_prime_utr-22702Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_443 174466..175017 +
EsuBft887_3a-0001-exonagat-three_prime_utr-22703Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_443 175918..177439 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft887_3a-0001 ID=EsuBft887_3a-0001|Name=EsuBft887_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2872bp|location=Sequence derived from alignment at Scaffold_443:172525..177439+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAACACCTTGTTTGGGGAGATGCTCCAGTTCGCCCTGGTTCTCGG
GACGATCATGATGGGCTTCACCGTTTGGTTGGCCGTTTTCAAAGCCATGC
TCGGCGAGGTGAGCGTGTTCTCGGAGAACTACGAAGACAGTGTGCACAGA
GATGTCGCCCGGGTACTCCTTGTCGTGTACCTGGCCGTGGTGGCCGTCAT
GCTCCTCAACCTTTTCATCGCGGTACTGAGCTCCGTCGTCGTTATCCTCC
ACGTCTTCGCACTGCCCTTCGTCCTGGCGTGGTTCTGGGTCCGCTCCGGG
CTGGGGCTCGCGGCGCTGACGACGCTGGCGGCTGCGCTTTGCGGCGGGAA
CGGAGGGGAAGACGGCAGCGGCAAGAGAGTGCCGCGTCGACCCTCCGCTG
CTGGTTCCGGCGGCGGGCCTACCGCCGGTTCGCCGTCCCTGGAAAACCCC
ACGACGCCCGACGGCCTCGCGCAGCGACAAGACGAACAGGACCAAACGGT
AACAGTGGAGGAAATCATACGCGCGCGGGACCACCTGGACGAGGCCGGGA
GGGGTCGGGGCGAGGCCGTCCTCGCTCTCCTCAAGTCCGTGAACGCTGAC
CTGAAGGACCAGATCGCGGAGTTAGAGCGAAGCGTGGCTCGCAGCGTCGA
GAGCCTGAGGGTGGGGTCGGAGGCGAGCGTTGCCTCTATCGTGGAAGCGG
AGGTGGCGAAGGCTGTCGAGGAATCCCGGGGTCCGTCGCCACGAGGGGCG
TTGTCGCCCGCTGCTGGCGCGCCGCGAGTGGACAAGCCGGGATCATGAAG
CGGCCTGATGGCGGCGCAATTTCACGACCACTCGGCCGTATGATCACCGC
CTTCTTTCAGTCACTTGTGGTGCTGCAATGATTTCCTCTTGTCGTTCGGT
GATGGCGGTGTCTTTAGCATCGATTCGGCAAGAGTGTACCCAGCTGCAAG
AATTTACCCCGAACGTGTTGGTTTGGTTTTGGCTTTGGTATGATGTACTG
TATATTTTTTACCGTCTTCTACTTCCTCTGTTTGTCCCCAGTGGGTGAGG
CTTCCCAGAAACGAACCCCTGGTAGTGCGTTCCCACACCGATTAGACTCG
GCGCTGTTTCATAGTTGAATTGCAGTATGGTTGTAGAGGGAGGTCGGAGG
TGTTTTTTGGTTGAATATCATTGGTCACATGTTTACGTACGGGCAGCGCT
TTGAAAGTAGTTCGACCTTCGTACGCATGTAGTCTAGAGATTACACCTGT
AACTGTTTCTGACGAACTTCACCTCCATCCAGGTTTGGCTTGCCTTCTTA
GGCGACGTATTTTTGTACGTACATGCAGCTCTTTGAGAGCATTTCGCCCA
GTGATGGGATGAGAGTCGTTTGTGCGAAGCCTGGACCCCTCCATCAAGAA
GAAGAGTGTGGCCGGAACTGTAGCATGGGCGACGGAAAATGGAAATGGGA
TGCTAAACCGACCACCGTTGGCGAGAATCGGGGCCGACCTACGATACTCG
ATTCTACTTTTTTTGCGTCCCAAGGAACTGCCGGGCGCCCCCCTCTCCTG
TATAGCTAGCAGTTTGTACGACACCTTCCTTAGTTGAGTCACTTCTTGCA
TGTTGTTTTTGTTGCTGTTCTACCAGTTCCGATGTAAACGCAAGTTCCGA
TGTAAACGCAAGGATACATCTCCAAAGCCGTCTTAACACTCTGATCTAGC
TTGGGACATGAGGAACGAACGGCCATTCGCGGAACAAAAGGCCAGGAATC
AGGCATGCTGCACACAATTACAGAGACGACAACGCCCATTGACAAATAGC
CGCCCCGTCGCAGCGAAAAATATTCACGTAAACATAAGACCCCTACCCAA
TGTAGACGAGCTTTCCTGAACGTCATGTATCTACCGATAAGCCTTTGGAA
ACCCATGAAAGACATGGTCTATAAACCTACAGCAGAGGAGAAAAAATAAC
ACGAAGAATCCTTCCCTCTCTTGTCAGCGGGGTTCTGGGGCACATTGATG
CTCTCCCTGCAAACGCTAAAATGTGGCCTCCAGGCGGAATACTGTCTTGC
GCGAAACACAGCAGACAGCCCTTTACCACCAGCCGCCCTTTACAGTATGA
ACAATAACTAAGGAGTAGACAATGTGCTTTGGTCTTCCGACCGTACCCCT
CTCCCGTGTGACCGCGCTCGCTGAGCCCGTACATACCCAAATGCGTGGCA
TTCGCTACACCTCTTCCAGTGTCCAGAAAGCATGGGAAGGCGGATGACTC
ACGTGAGCCCAGGGTTGGGGCTCCTGCGAAAACACTCGAGAAGTAAAAAG
CAGCCTAATTATTTCGCTCTCCCGCTCAAAACTGCTGCTGCTATTCATAT
TTACTATCATCGCTATCGTATTACACTGCTTGAGCACTGAACAACCACGT
GCTACATGCTTCATATGCACGGGAATTTCTCCACGCGAACAAAAAACAAA
ATGGTGTAGCTTCCTTGACAACATTCATGAGCGACGACTGCTGTAGCATA
AAAAAATCATCTCCCGTTCCGCCCTAAACTGCGTAATAAGCACTAAACAC
ACACGTGGGGCACACTTATCAGTGGACCTCATGCGTGTGTTTCCGTACAC
ATGATGTTTCCGCAAACAACCAAAACAAAGATTAGGTACACACCACATCA
ACAGGAGGACACGAATGGAGGGAATCCGAGAACACGCTCTTGTGATACTG
GAGTGGTGGTGACACAAGCAGCCAGCAGAGCGGGAGGGGGCACGCCGACG
TTGTCCCTTCACCCGTGTAACTCATGTCAGGGAGCATGGAGACATCTCTC
GTAGGAGGCACCATGTAGTTGTACGGTACACAGGTTCTCTCTCTCTCTCT
CACTCTCTCTCGCTCTCTCTCT
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protein sequence of EsuBft887_3a-0001

>EsuBft887_3 ID=EsuBft887_3|Name=EsuBft887_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=265bp
MMNTLFGEMLQFALVLGTIMMGFTVWLAVFKAMLGEVSVFSENYEDSVHR
DVARVLLVVYLAVVAVMLLNLFIAVLSSVVVILHVFALPFVLAWFWVRSG
LGLAALTTLAAALCGGNGGEDGSGKRVPRRPSAAGSGGGPTAGSPSLENP
TTPDGLAQRQDEQDQTVTVEEIIRARDHLDEAGRGRGEAVLALLKSVNAD
LKDQIAELERSVARSVESLRVGSEASVASIVEAEVAKAVEESRGPSPRGA
LSPAAGAPRVDKPGS
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mRNA from alignment at Scaffold_443:172525..177439+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft887_3a-0001 ID=EsuBft887_3a-0001|Name=EsuBft887_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4915bp|location=Sequence derived from alignment at Scaffold_443:172525..177439+ (Ectocarpus subulatus male Bft15b)
ATGATGAACACCTTGTTTGGGGAGATGCTCCAGTTCGCCCTGGTTCTCGG
GACGATCATGATGGGCTTCACCGTGAGCTTCTTCGCTCTGTTCCAGGAGG
CCTAGTCGTACGGCGACGTGAGTCTTGCACCGCCGTAAGCTCGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTAGTTGTTGCTGTTGTCGTATCCGGAC
TGGAAAGGCGTCGACAATTTCAATATGCCAAACGCACCTGTAGCGAGGTA
CACATGGTGTACGCCCTCAGTTGCACCTCTTGCCTCGTTTCTCGGGGACC
CTGAATGTGGGATTTAACGGCAGCTCCTGCACGTGTGTCGTTCCCCTGGT
TTTCGTCACCTCTTTTTCTCGTTGCTACCGTGATGCTACGTCCCTCCCCA
CGCCCCCCCGCGATGTCGCCAGGTTTGGTTGGCCGTTTTCAAAGCCATGC
TCGGCGAGGTGAGCGTGTTCTCGGAGAACTACGAAGACAGTGTGCACAGA
GATGTCGCCCGGGTACTCCTTGTCGTGTACCTGGCCGTGGTGGCCGTCAT
GCTCCTCAACCTTTTCATCGCGGTACTGAGGTAAGGAAAACACTCGTCAG
TGTTTGTCACCGTCGTCGTCGTCGTCGTCGTCGGTGTTGTTGTTGCTGCT
GTTGTCGTTGTTGCTGCTGTTGTTGCTGGTGTCGTTGTTGTCGTTGCTCT
TGGCTTTCACACAAGATTGCTGTTTGTGAATATGCACGTTGTTCGTTTTG
TCGCATCACCTGGCGCGAACGTGTGCTCATACTTCCACTTCAGGGATGCA
GTTGCTGCGTTGTTGTTCGTGTGTTCACAACGATAGTGGAGGTGGATTGC
TTCTTTGGGTAGGGGACGCTTGGTCAGAGTGTTGCCTTGTCGTGTCCACC
CCGTATCGTGCAGGCCTTCTTTTTTCGTTTCGCTGCCTGGCGTCACGGGG
ATGTCGGTTGTTTCGAGTGGAGCCATCGGAGGGGGGGGTCTCTGCGAGTC
GTGTTGATTGAAACGCCACTAGTTTCCCAGCCGCCATACCAGTAAGTCGA
CGCCAGCTTGCCCTACAGAAAATGGGAAGCCGGATCAGCGTTTTTTTTTT
TTTCATGCACAAGTGCAACCAAGTAGTCGTTTATTTTTCATTACAGGATT
TCACAAGGTTTCACTAGGTAGCCTCCGCTGCTATTGGTGTCTGTTCTCTT
GGTATCAACTCTATCTCTCCTCCCTCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCNGCAGCTCCGTCGTCGTTATCCTCCACGTCTTCG
CACTGCCCTTCGTCCTGGCGTGGTTCTGGGTCCGCTCCGGGCTGGGGCTC
GCGGCGCTGACGACGCTGGCGGCTGCGCTTTGCGGCGGGAACGGAGGGGA
AGACGGCAGCGGCAAGAGAGTGCCGCGTCGACCCTCCGCTGCTGGTTCCG
GCGGCGGGCCTACCGCCGGTTCGCCGTCCGTCTGTAGTGACGTCATGGTC
GCTGACATGCTGCGACGGGGGAACGCCTCCACTTGGGCACGTCACGCCGC
CGGCTCCAGTTTTGCGGAGATCTGGGCGTAGCTGGAAAACCCCACGACGC
CCGACGGCCTCGCGCAGCGACAAGACGAACAGGACCAAACGGTAACAGTG
GAGGAAATCATACGCGCGCGGGACCACCTGGACGAGGCCGGGAGGGGTCG
GGGCGAGGCCGTCCTCGCTCTCCTCAAGTCCGTGAACGCTGACCTGAAGG
ACCAGATCGCGGAGTTAGAGCGAAGCGTGGCTCGCAGCGTCGAGAGCCTG
AGGGTGGGGTCGGAGGCGAGCGTTGCCTCTATCGTGGAAGCGGAGGTGGC
GAAGGCTGTCGAGGAATCCCGGGGTCCGTCGCCACGAGGGGCGTTGTCGC
CCGCTGCTGGCGCGCCGCGAGTGGACAAGCCGGGATCATGAAGCGGCCTG
ATGGCGGCGCAATTTCACGACCACTCGGCCGTATGATCACCGCCTTCTTT
CAGTCACTTGTGGTGCTGCAATGATTTCCTCTTGTCGTTCGGTGATGGCG
GTGTCTTTAGCATCGATTCGGCAAGAGTGTACCCAGCTGCAAGAATTTAC
CCCGAACGTGTTGGTTTGGTTTTGGCTTTGGTATGATGTACTGTATATTT
TTTACCGTCTTCTACTTCCTCTGTTTGTCCCCAGTGGGTGAGGCTTCCCA
GAAACGAACCCCTGGTAGTGCGTTCCCACACCGATTAGACTCGGCGCTGT
TTCATAGTTGAATTGCAGTATGGTTGTAGAGGGAGGTCGGAGGTGTTTTT
TGGTTGAATATCATTGGTCACATGTTTACGTACGGGCAGCGCTTTGAAAG
TAGTTCGACCTTCGTACGCATGTAGTCTAGAGATTACACCTGTAACTGTT
TCTGACGAACTTCACCTCCATCCAGGTTTGGCTTGCCTTCTTAGGCGACG
TATTTTTGTACGTACATGCAGCTCTTTGAGAGCATTTCGCCCAGTAAGTC
TTCCACCTGTAGACGAAGAGTTTTTGATGAAATTTGTCTCCATCCAGTAG
TTGTTTGCCTTCTTCCCAGGGACGTGAAGAGTGGCTCTGAGAACGTGTCA
GTTGCATACCATGACAAGCCAGAGTTAGCGCAGAAAATCGCCATGTAGAG
TTACGGATGATTGTGGTTCGATATCACACGAAAGGCTAGCCACCGTGACA
GCAGTTTTCTTGTGAGCTTTGTTTTGATGTTGTTGCAGTGACAGCGGCGT
GAGGAAAAGTAAAGATGATTGTGGCAGATAGATGTGATGGCCTAAAAGCG
CACGTACTCCTTGCACGCCACACAACCCCTTCCTTCCCCGCGGGAAGAAC
GAAATTGTTCATTTTGTGTACCACTAGACTGGCTGTTTGAAGACAACTCT
GAGGTGTTGTAGTTGACAATCATGATGGCCGACAAGCGTGCAAACGTGGA
GTTGTTCGTGTGTCATTGCTCGACCTTGGGAGCCATCCGCACTCGCCGAG
TGGAAAATCTGGTCGAGTCATGTTTGGCGATCAAGAGTCTGGTGCAATGT
CGATGTCTTCGGAGAAAATCCTTGCTGGCTTTGTGTTCGGTTCTTTGGTG
CTGTCAATCTTAATCTTTAGGCTCTGAGCGTAGCTTAGCTTGTGACGTCG
CGTGGAGGATGGATTTTGCCGGGGGGGCTGTCCGTACAGTTCGAAGTCGA
AATACTACGCCGTCGGGCGGAGGGCATTTGAAAGGGAGAGGATCGGTGTC
AACATGAGTCTGATATTCACGTTGGTAGACTAGACTACACATGTGTTGAA
CTCTTTATTTTTCAGGTGAACTGCACCTGCAACATGAGCATTTTGTCGCC
GGCAAGGATTAGACTAATCAACTGCACACCTCTCGTGAAGCAGGTGATGG
GATGAGAGTCGTTTGTGCGAAGCCTGGACCCCTCCATCAAGAAGAAGAGT
GTGGCCGGAACTGTAGCATGGGCGACGGAAAATGGAAATGGGATGCTAAA
CCGACCACCGTTGGCGAGAATCGGGGCCGACCTACGATACTCGATTCTAC
TTTTTTTGCGTCCCAAGGAACTGCCGGGCGCCCCCCTCTCCTGTATAGCT
AGCAGTTTGTACGACACCTTCCTTAGTTGAGTCACTTCTTGCATGTTGTT
TTTGTTGCTGTTCTACCAGTTCCGATGTAAACGCAAGTTCCGATGTAAAC
GCAAGGATACATCTCCAAAGCCGTCTTAACACTCTGATCTAGCTTGGGAC
ATGAGGAACGAACGGCCATTCGCGGAACAAAAGGCCAGGAATCAGGCATG
CTGCACACAATTACAGAGACGACAACGCCCATTGACAAATAGCCGCCCCG
TCGCAGCGAAAAATATTCACGTAAACATAAGACCCCTACCCAATGTAGAC
GAGCTTTCCTGAACGTCATGTATCTACCGATAAGCCTTTGGAAACCCATG
AAAGACATGGTCTATAAACCTACAGCAGAGGAGAAAAAATAACACGAAGA
ATCCTTCCCTCTCTTGTCAGCGGGGTTCTGGGGCACATTGATGCTCTCCC
TGCAAACGCTAAAATGTGGCCTCCAGGCGGAATACTGTCTTGCGCGAAAC
ACAGCAGACAGCCCTTTACCACCAGCCGCCCTTTACAGTATGAACAATAA
CTAAGGAGTAGACAATGTGCTTTGGTCTTCCGACCGTACCCCTCTCCCGT
GTGACCGCGCTCGCTGAGCCCGTACATACCCAAATGCGTGGCATTCGCTA
CACCTCTTCCAGTGTCCAGAAAGCATGGGAAGGCGGATGACTCACGTGAG
CCCAGGGTTGGGGCTCCTGCGAAAACACTCGAGAAGTAAAAAGCAGCCTA
ATTATTTCGCTCTCCCGCTCAAAACTGCTGCTGCTATTCATATTTACTAT
CATCGCTATCGTATTACACTGCTTGAGCACTGAACAACCACGTGCTACAT
GCTTCATATGCACGGGAATTTCTCCACGCGAACAAAAAACAAAATGGTGT
AGCTTCCTTGACAACATTCATGAGCGACGACTGCTGTAGCATAAAAAAAT
CATCTCCCGTTCCGCCCTAAACTGCGTAATAAGCACTAAACACACACGTG
GGGCACACTTATCAGTGGACCTCATGCGTGTGTTTCCGTACACATGATGT
TTCCGCAAACAACCAAAACAAAGATTAGGTACACACCACATCAACAGGAG
GACACGAATGGAGGGAATCCGAGAACACGCTCTTGTGATACTGGAGTGGT
GGTGACACAAGCAGCCAGCAGAGCGGGAGGGGGCACGCCGACGTTGTCCC
TTCACCCGTGTAACTCATGTCAGGGAGCATGGAGACATCTCTCGTAGGAG
GCACCATGTAGTTGTACGGTACACAGGTTCTCTCTCTCTCTCTCACTCTC
TCTCGCTCTCTCTCT
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Coding sequence (CDS) from alignment at Scaffold_443:172525..177439+

>EsuBft887_3a-0001 ID=EsuBft887_3a-0001|Name=EsuBft887_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=798bp|location=Sequence derived from alignment at Scaffold_443:172525..177439+ (Ectocarpus subulatus male Bft15b)
ATGATGAACACCTTGTTTGGGGAGATGCTCCAGTTCGCCCTGGTTCTCGG
GACGATCATGATGGGCTTCACCGTTTGGTTGGCCGTTTTCAAAGCCATGC
TCGGCGAGGTGAGCGTGTTCTCGGAGAACTACGAAGACAGTGTGCACAGA
GATGTCGCCCGGGTACTCCTTGTCGTGTACCTGGCCGTGGTGGCCGTCAT
GCTCCTCAACCTTTTCATCGCGGTACTGAGCTCCGTCGTCGTTATCCTCC
ACGTCTTCGCACTGCCCTTCGTCCTGGCGTGGTTCTGGGTCCGCTCCGGG
CTGGGGCTCGCGGCGCTGACGACGCTGGCGGCTGCGCTTTGCGGCGGGAA
CGGAGGGGAAGACGGCAGCGGCAAGAGAGTGCCGCGTCGACCCTCCGCTG
CTGGTTCCGGCGGCGGGCCTACCGCCGGTTCGCCGTCCCTGGAAAACCCC
ACGACGCCCGACGGCCTCGCGCAGCGACAAGACGAACAGGACCAAACGGT
AACAGTGGAGGAAATCATACGCGCGCGGGACCACCTGGACGAGGCCGGGA
GGGGTCGGGGCGAGGCCGTCCTCGCTCTCCTCAAGTCCGTGAACGCTGAC
CTGAAGGACCAGATCGCGGAGTTAGAGCGAAGCGTGGCTCGCAGCGTCGA
GAGCCTGAGGGTGGGGTCGGAGGCGAGCGTTGCCTCTATCGTGGAAGCGG
AGGTGGCGAAGGCTGTCGAGGAATCCCGGGGTCCGTCGCCACGAGGGGCG
TTGTCGCCCGCTGCTGGCGCGCCGCGAGTGGACAAGCCGGGATCATGA
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