EsuBft887_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft887_2a-0001
Unique NameEsuBft887_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_443contigScaffold_443:169625..170774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FMG5
ProteomeIdEsuBft887_2
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length42
Hectar predicted targeting categorysignal peptide
Evalue9.04e-66
EggNOG OGsKOG3676@1|root,KOG3676@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptioncalcium ion transmembrane transport
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft887_2aEsuBft887_2aEctocarpus subulatus male Bft15bgeneScaffold_443 169625..170774 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft887_2a-0001-exonEsuBft887_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_443 169625..169747 +
EsuBft887_2a-0001-exonagat-exon-108748Ectocarpus subulatus male Bft15bexonScaffold_443 170475..170774 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft887_2a-0001-cdsEsuBft887_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_443 169625..169747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft887_2a-0001EsuBft887_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_443 169625..170774 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft887_2a-0001 ID=EsuBft887_2a-0001|Name=EsuBft887_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=423bp|location=Sequence derived from alignment at Scaffold_443:169625..170774+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGATGCTGCTCGGTTTCTACGTGCACCTCATCACGCTCGCGCTCTA
CACGGCGGTGGCGTTGGAGAGCGACGACGCCGAGCTCAGCAACACCGAGA
TTGCCCTGACGTTCCATGTCATGGCCGAGATCGTGAGCAACTTCCTCCAA
ATGCGGGCGGGCTTCGTGGAGTTCTGGCGGGACAAGTGGAACTGGCTAGA
GAGCCTGTCCCTGCTCCTGCTGGCGGGAGGGCTGACCATCCGACTCGGCA
ACAGCGACGTGCACCAGGGTCGCGCGTTGTTCGCCCTCAGCGCCCCGGTC
GTGTGCTCTCGCGTGCTGTTCTTCGGACAGTTCTTGAAGCGCCAGGGCCT
CGTGATCCAGGCGAGCTTGAGCGACGGGTTGTGCCCTCACCACGACGTGG
TCGTTGTGCATCTTGGCGCGTGA
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protein sequence of EsuBft887_2a-0001

>EsuBft887_2 ID=EsuBft887_2|Name=EsuBft887_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=140bp
MRMLLGFYVHLITLALYTAVALESDDAELSNTEIALTFHVMAEIVSNFLQ
MRAGFVEFWRDKWNWLESLSLLLLAGGLTIRLGNSDVHQGRALFALSAPV
VCSRVLFFGQFLKRQGLVIQASLSDGLCPHHDVVVVHLGA
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mRNA from alignment at Scaffold_443:169625..170774+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft887_2a-0001 ID=EsuBft887_2a-0001|Name=EsuBft887_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1150bp|location=Sequence derived from alignment at Scaffold_443:169625..170774+ (Ectocarpus subulatus male Bft15b)
ATGCGGATGCTGCTCGGTTTCTACGTGCACCTCATCACGCTCGCGCTCTA
CACGGCGGTGGCGTTGGAGAGCGACGACGCCGAGCTCAGCAACACCGAGA
TTGCCCTGACGTTCCATGTCATGGTGAGCAAGCACCTATTGTTGTTGTTG
CTGTTGTTGCTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTCTTGCT
GGCTGTTGGTGTCGTCGTCGCCGTCTTGTTTTGCCACGCGTCACTCAAGC
GAGAAGCATCCCGCCCCAGGCCGTCGAACTACATACCGCCGTAACGACAA
GACGGTTCGAAAACATGCGACCTCTCGAATTGAGTGCACACATAGCTTTG
CCCCAACACGATAGATTCAAGAGGACAGGAGAGTGTGTGCGTGTGGGGGC
GGCGGGAAGAGGACAGGACCTTCCGCGTGCCCCCTGCTATCCCAGATTGG
CTAATGGAGAGACAGAAGGGAGGCTATAATCACATGCCCAAAGAACAAGA
GACACGGGAGGAAAAGAACTCGATCCGAATGCTGAAGAATAGAACGTGAA
TGCTTTCACCGGTTCGTCAGGCGATGCATGGCGGATCAAGTTCCTCTGTC
TATTCGTGTTGTATTATGCCGTGGTTTTAGTGAATTTATGTGTCCTTGTT
GCCTCCTCTTTGGTTGTTCGAGGCGTGTGGTATCTCTTTTCGGTGCATGG
TTGTTCGAAGCCTGTAGCCACGGAAGACGTCCATGTCAGTTCAACCAGTG
CGGATGCTAACAACCACTGAGCAAAGTCAGAACACCAACCCTGTCCCCAC
GGTGGACCCAACCCCACGGGAATGGTTGGTTTCATTCCACAAACACGCAG
GCCGAGATCGTGAGCAACTTCCTCCAAATGCGGGCGGGCTTCGTGGAGTT
CTGGCGGGACAAGTGGAACTGGCTAGAGAGCCTGTCCCTGCTCCTGCTGG
CGGGAGGGCTGACCATCCGACTCGGCAACAGCGACGTGCACCAGGGTCGC
GCGTTGTTCGCCCTCAGCGCCCCGGTCGTGTGCTCTCGCGTGCTGTTCTT
CGGACAGTTCTTGAAGCGCCAGGGCCTCGTGATCCAGGCGAGCTTGAGCG
ACGGGTTGTGCCCTCACCACGACGTGGTCGTTGTGCATCTTGGCGCGTGA
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Coding sequence (CDS) from alignment at Scaffold_443:169625..170774+

>EsuBft887_2a-0001 ID=EsuBft887_2a-0001|Name=EsuBft887_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=423bp|location=Sequence derived from alignment at Scaffold_443:169625..170774+ (Ectocarpus subulatus male Bft15b)
ATGCGGATGCTGCTCGGTTTCTACGTGCACCTCATCACGCTCGCGCTCTA
CACGGCGGTGGCGTTGGAGAGCGACGACGCCGAGCTCAGCAACACCGAGA
TTGCCCTGACGTTCCATGTCATGGCCGAGATCGTGAGCAACTTCCTCCAA
ATGCGGGCGGGCTTCGTGGAGTTCTGGCGGGACAAGTGGAACTGGCTAGA
GAGCCTGTCCCTGCTCCTGCTGGCGGGAGGGCTGACCATCCGACTCGGCA
ACAGCGACGTGCACCAGGGTCGCGCGTTGTTCGCCCTCAGCGCCCCGGTC
GTGTGCTCTCGCGTGCTGTTCTTCGGACAGTTCTTGAAGCGCCAGGGCCT
CGTGATCCAGGCGAGCTTGAGCGACGGGTTGTGCCCTCACCACGACGTGG
TCGTTGTGCATCTTGGCGCGTGA
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