EsuBft886_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft886_5a-0001
Unique NameEsuBft886_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_493contigScaffold_493:125266..130182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FY90
ProteomeIdEsuBft886_5
Protein domainsIPR023299
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length212
Hectar predicted targeting categoryother localisation
Evalue1.25e-109
EggNOG OGsKOG4383@1|root,KOG4383@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Cross References
External references for this mRNA
DatabaseAccession
GO0000166
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft886_5aEsuBft886_5aEctocarpus subulatus male Bft15bgeneScaffold_493 125266..130182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft886_5a-0001EsuBft886_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_493 125845..129143 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft886_5a-0001-exonagat-exon-67653Ectocarpus subulatus male Bft15bexonScaffold_493 125266..125875 +
EsuBft886_5a-0001-exonagat-exon-67649Ectocarpus subulatus male Bft15bexonScaffold_493 125995..126110 +
EsuBft886_5a-0001-exonagat-exon-67651Ectocarpus subulatus male Bft15bexonScaffold_493 127091..127310 +
EsuBft886_5a-0001-exonEsuBft886_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_493 127968..128325 +
EsuBft886_5a-0001-exonagat-exon-67652Ectocarpus subulatus male Bft15bexonScaffold_493 129017..129694 +
EsuBft886_5a-0001-exonagat-exon-67650Ectocarpus subulatus male Bft15bexonScaffold_493 130045..130182 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft886_5a-0001-exonagat-five_prime_utr-14687Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_493 125266..125844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft886_5a-0001-cdsEsuBft886_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_493 125845..125875 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft886_5a-0001-exonagat-three_prime_utr-22697Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_493 129144..129694 +
EsuBft886_5a-0001-exonagat-three_prime_utr-22698Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_493 130045..130182 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft886_5a-0001 ID=EsuBft886_5a-0001|Name=EsuBft886_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2120bp|location=Sequence derived from alignment at Scaffold_493:125266..130182+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTTCTTCCGTTTAATCCGAGCGGCGAGTTTCTTCGCATC
GATCCATCTTTGCAGGGCTCGGTGCTTGCCTGTGGTGTTTGGACGAGGAG
GGTGCAGCACTCCCCCCCCGCGTCGCCCGCGGTTATCTCCCTTCTCCCGC
GAACGGTGCTTACTCGCGTGGTTTTTACGAATCTCTCTGCTCCTCCAGCT
TCGTGGGCCACGTTTTCCGCGACGGTGGTTACCAGGTGCAGCTTGCCGCT
TTGCATTGCTGCCGCGGGGACAAGGTCCACATACACCTCTCGCCACTACC
ACCGTCTGTGCATCCTCACCGCCACGCTGAGCCAGCGCGGCGTTGAGTTG
CACCTTGGGACACCACCCACCTACTATCTGTTGTGGCCTGGTTCGCCCGC
GAGGGACTCACAAGGTCGATTTCGGCCCCGGCCGGGGAGCAGGCCGGGGA
GGAGAGGAGGTCATAGTGCTGCAGTCCAGATGTGTTGTATCATGGCTTCA
GAGGTGACCGGGAACCCATCCATCGTGCTGGGTATGTGTCGGGACTACTG
GGATGGGAGCGCCATTTCGAACCTGCCGGCCACCCTCCGCAAGACCATCC
TCGACATGCACCAGCAGTGGAGTTTGGAAGACCTAGACGTCGTCGCGTTC
GCCTACGTCCCCGTGCCCTACACGGTGAACCCTTTCATCTCGTCCTTCAA
CAAGCACCCGGACTACCTCATCCACCTCAGCCAGGGCCAAGCCTCCTCAT
CCGGAAAAGGGCGAAGCACCATCAGCGGCGGCGGCGGCGGCGGCTCGCGG
GCGGGAGCGAGTCCAGTCATCAGCCCGCTTCCGTCCAGTTCACCACAGTT
TCGAGGCGCTGACTGTACGCTTGGCATCATATCTGAGACGTGTAGCACTC
ACCAACAAGGCCACCACAATGCTGGAGGCGATGTCGTCAGCAGCGGCACT
GCCAACGACGATGACCCAAACAGTAAGGGGGCCGAAGGCCCCGACAACTT
TTCGCCGCCATTCCAAGAGGGGGGCGGCGCGACAAAAGGGAGGGCGCAAA
GGTTTCAAGGATCACCAGATAGGGGAGGTTCCCCTTCAGCTGGAGCAGTA
GCTGCCGAAACCACCAGCGACGGTGCCGAGTCGTCAGCAGAAAAAGGGCA
GCAGTCATCGGTTATCGGTGCTGCTCGACAGTGCTCATCGGCCAATTCAT
CACCGGTGCGCTCCAAACTGATGAAAGCCATCGCCGAAGAACCGGGATTT
GAATCGGGATCGGAGAAGAATTATTCTCAGGGTGAGGACGGCGAACCACA
AGGCAAGAACAATGACGGCTTGCTGTTGTAGTTCTTTTACGACAGGAGAA
CGAACACACCGCGGGCAAAAGGTGGCAGCGATTTATTGGAACGTTGTTTG
CAACGAAACAGAATCGTACTGCCACTGGCGAGGTTGATTTCATGACGGCA
CGCTGAGCGATGGCCATGGGTAGCGCGATTGGACGGACTGGAGAAAACCG
AGGCGACCATTTCTCACGTTCGTGGGCCGCCACTATCCCTCACCACAAAA
GCATGACATTCATCCTCCAGTTTAAAGTGATATGGTACACTAGTTTTTGT
GTTGCCATGTATTCCCCTTGACATGAAGACTTTATCCCTATTTTTCTCTT
CACTAGTGACTGCTGCACCTTTTTACATCCAGGAACCAACCGCAGCTCTG
GGGTAGCTCGGGTACTAACGAGGGGCGCATCCGACGGCTGCATCCACAGC
AGTCCCAGCAACCGCGGCAAAAATGAGAGCAACCCCGCCTTTGTTAGGGA
GATCATGCAACCCACGGAGTCAGCCACCAGTGTTGCCGCCGCCTGTGAGG
CGACGGTGGCGGACTTGAACCTGCAGCAACAGGGTGTACACGGCGGCAGC
AGAAAACCCAGCAGTAGCGGCACCTCATTTCGTCGCGGAACCTTTGAAGC
TGTTCCGGAGGGCGAAGCTGCTGATAGCGGTGGTGTCGACAGGGGTGTTG
CCGGGACAAAGGAAAAGGAA
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protein sequence of EsuBft886_5a-0001

>EsuBft886_5 ID=EsuBft886_5|Name=EsuBft886_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=283bp
MCCIMASEVTGNPSIVLGMCRDYWDGSAISNLPATLRKTILDMHQQWSLE
DLDVVAFAYVPVPYTVNPFISSFNKHPDYLIHLSQGQASSSGKGRSTISG
GGGGGSRAGASPVISPLPSSSPQFRGADCTLGIISETCSTHQQGHHNAGG
DVVSSGTANDDDPNSKGAEGPDNFSPPFQEGGGATKGRAQRFQGSPDRGG
SPSAGAVAAETTSDGAESSAEKGQQSSVIGAARQCSSANSSPVRSKLMKA
IAEEPGFESGSEKNYSQGEDGEPQGKNNDGLLL
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mRNA from alignment at Scaffold_493:125266..130182+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft886_5a-0001 ID=EsuBft886_5a-0001|Name=EsuBft886_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4917bp|location=Sequence derived from alignment at Scaffold_493:125266..130182+ (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTTCTTCCGTTTAATCCGAGCGGCGAGTTTCTTCGCATC
GATCCATCTTTGCAGGGCTCGGTGCTTGCCTGTGGTGTTTGGACGAGGAG
GGTGCAGCACTCCCCCCCCGCGTCGCCCGCGGTTATCTCCCTTCTCCCGC
GAACGGTGCTTACTCGCGTGGTTTTTACGAATCTCTCTGCTCCTCCAGCT
TCGTGGGCCACGTTTTCCGCGACGGTGGTTACCAGGTGCAGCTTGCCGCT
TTGCATTGCTGCCGCGGGGACAAGGTCCACATACACCTCTCGCCACTACC
ACCGTCTGTGCATCCTCACCGCCACGCTGAGCCAGCGCGGCGTTGAGTTG
CACCTTGGGACACCACCCACCTACTATCTGTTGTGGCCTGGTTCGCCCGC
GAGGGACTCACAAGGTCGATTTCGGCCCCGGCCGGGGAGCAGGCCGGGGA
GGAGAGGAGGTCATAGTGCTGCAGTCCAGATGTGTTGTATCATGGCTTCA
GAGGTGACCGGTCCGTTACTCGTGTTTTGTACAATTCAGAGCATCAGATA
ATATCGGAATCGGGGCAACCCACCTTCTCATCAATTCAACACGTCTCTGA
ACGCATCCTAAACCTGCAACACCTGGCAGGGAACCCATCCATCGTGCTGG
GTATGTGTCGGGACTACTGGGATGGGAGCGCCATTTCGAACCTGCCGGCC
ACCCTCCGCAAGACCATCCTCGACATGCACCAGCAGTGGAGTTTGGTAAG
CGCTGCGGGGCATCACGAGTACAGCAGTGGTCCCACCATATCGCGGTGTG
GTGACAGACAAGAATGCGCCACGTCATACTGGGAACTCCGCTATTGGCGG
AAAGTGTCTGGTCGCAATTAAGTAGCGGGCTAGGTTGTTGTGGCAAGGAT
ATTTGGCCGCTTTTTTGTCGGGAACCGCGCTATTCGGGACCGTGATATAC
CGAAACTCCTACTGTACCCCCCTACGGTGGGTTCATCGGGTCCCAATCCC
AGCCTGGTCGGCGAAACCCGGTAGAGGGCGTGCTCTCCTGGGCCCCGGCT
TTGTTGGTAGGCCCTCCATTCGCAGCTAGGAAACCTCGTTTCACAATGAT
TTGGTTTCTGGACGCGTTCTCTCGAGAAGATTATTTTCCAGTATTTTCTA
ACGTGGTGGTTGTAAATCTGCACAGTGCTCGTGGTTTAGAAAGCAGGCGT
CAGCGTACGTGCCAGAAGGCGGCGTACTTGTACTTGTTGATGGATCAACT
GTTGTTTCTGATTGCTGACCGTACTGCCTATGCCTGGCCATACCTCCGTT
GCTGCATGCTTCATCGCCACTGACCGCACTGCCACTTTATTGCGCACCTC
TGTTCCCGCATACCACTTTGTTTTCGTTTTTGCCTGTCTGTTTTGCTCTC
TTTCGTTCCTGCCAACGCTGTAACAATCCCTCCCACTTCACGACCTTGTC
CATCTGCCAACGTTGCACCTTTTTGCTTGACAAGCATTGCGGGTCTGCTG
TCCTAAGTACAATGTGCAGATATATCTAGGCCTCCCACGCGACCCTCGCT
TGCAGTTCCGGCCTTCAGCTATTTCCCAGATCATCCAATAACACCTGGCC
GATACCTCGTTCGTGCTGCGAGATCTCTGTCTGCGCCTTCTCCTCCGTTG
TACGTATCCTGCCCCTTCTTTCGCTGTCGAACGCCCAGCTCTGCCCACCC
GACACAACGCCTCGCCCGATTTCAGGAAGACCTAGACGTCGTCGCGTTCG
CCTACGTCCCCGTGCCCTACACGGTGAACCCTTTCATCTCGTCCTTCAAC
AAGCACCCGGACTACCTCATCCACCTCAGCCAGGGCCAAGCCTCCTCATC
CGGAAAAGGGCGAAGCACCATCAGCGGCGGCGGCGGCGGCGGCTCGCGGG
CGGGAGCGAGTCCAGTCATCAGCCCGCTTCCGTCCAGTTCACCACGTGAG
TAGAACATTGGAACGTTTTCCCTTCCGTGAAAGTGTTTTTGCGGCTGTGG
AGAAGTCTTCGTCCCATGGTAGAGCTCTTTTTCCACGAGCGAAAGCGCCG
TTCTCCAGGAGGAAAAACTTCGCCCGTGGTTAAGGACTGTGGGCATTAAT
GAGTTCAGGAAGATTCCTCGCCGTTGATATCGTATGACTTTTTTCTCGGT
TTCATTCGATTTTGGAGTCGTCATGGTATCTTGTGGCCAACGGCGAAGCA
GACGGAAGTCAACGCGAGGTGCCTAGCATAGCTCAGAGCCGGTTTGCCCC
GAAAGTATGGTCATCACGTCGAGTGTGTTTTCACTTTTGCTATTGGAGAC
GCCTCACCAACCGTTTGGGACGGACGGTTTTGATTTTTGGAGACGACCTA
TGTCCAGGCCTAGGTTCGGGTTTTAGCTCGGCTGCTATCTTTATTCCTGT
CGGATAATGGCTGGTGTGCATCTCATATCGCTGTGCATGCCAGCGGTCTT
TCGTCGCTGCAATCTCTCTGTATGAACGCATCTCATATTACTGCTGTGCA
TGCCCGCTGTAAATCTTTGCCGCCCTGTCTTTATTTGAACACACCTCCTG
TCACTGCATGCCTGCGACCAATCGCCGCTGCCTTCTCTCTACTTGAAAAC
AGAGTTTCGAGGCGCTGACTGTACGCTTGGCATCATATCTGAGACGTGTA
GCACTCACCAACAAGGCCACCACAATGCTGGAGGCGATGTCGTCAGCAGC
GGCACTGCCAACGACGATGACCCAAACAGTAAGGGGGCCGAAGGCCCCGA
CAACTTTTCGCCGCCATTCCAAGAGGGGGGCGGCGCGACAAAAGGGAGGG
CGCAAAGGTTTCAAGGATCACCAGATAGGGGAGGTTCCCCTTCAGCTGGA
GCAGTAGCTGCCGAAACCACCAGCGACGGTGCCGAGTCGTCAGCAGAAAA
AGGGCAGCAGTCATCGGTTATCGGTGCTGCTCGACAGTGCTCATCGGCCA
ATTCATCACCGTGAGGGACAGACCTCTGATGTGCTGATGTCACGTGCTGC
ATTTTTTTCGCGTGTTTCTGGCTATTCCGCTCTGCTCCGTGCATGACTGT
TTCGCGTTGTGATCTATTCATCCCGGTCTCCTTTTGGCGTTTCTGAACGT
GGTTTGCGCTTCCCGTTCTTGTTTTGTCCCCTCTGTTGCTTTTGGCCTCC
CCCCTCTGTTTGATTTTGTGCCTTGAGCTTTCAGTGCTGTTTGTCTTTCT
GGACAATGCCCCCAGCACATCCGCTTGTCCTTGTGAAGGAAACCAGCTCC
CGTTACACTGGCTGGAGCTACGAAATATGACGTCGCTCACTGCTGACCGG
ATGACGGAGAGAATGGCTACAGCGTTTTTCACCGCACTCTACGTCATCTA
GGGCTGCGATGTTGTGTTCCTACTTTATCTTTGACTTGCTATTTTCACCG
GGCCTACGTGATTGCCAGCGTGACTTGGCTGTCTCGGGATCAGCATTGTA
CTTGGAAGAGGCTGAGCCCCGAATCGAGAACGTCATCGGTCGAAACCTGC
GGAGAGTAGATTCCGGTATTTTTTCCTCCTGTTCGATCAAGCGGTCGCGC
GATGCCGATCTCGTTGTATCCACTTCGAACTTCTTGGCTACATTCTTGTT
CTCGCTATTCCGTTGCTCCTGTTCACCTTGGTTAATTTTTTCTTCGAACA
GGGTGCGCTCCAAACTGATGAAAGCCATCGCCGAAGAACCGGGATTTGAA
TCGGGATCGGAGAAGAATTATTCTCAGGGTGAGGACGGCGAACCACAAGG
CAAGAACAATGACGGCTTGCTGTTGTAGTTCTTTTACGACAGGAGAACGA
ACACACCGCGGGCAAAAGGTGGCAGCGATTTATTGGAACGTTGTTTGCAA
CGAAACAGAATCGTACTGCCACTGGCGAGGTTGATTTCATGACGGCACGC
TGAGCGATGGCCATGGGTAGCGCGATTGGACGGACTGGAGAAAACCGAGG
CGACCATTTCTCACGTTCGTGGGCCGCCACTATCCCTCACCACAAAAGCA
TGACATTCATCCTCCAGTTTAAAGTGATATGGTACACTAGTTTTTGTGTT
GCCATGTATTCCCCTTGACATGAAGACTTTATCCCTATTTTTCTCTTCAC
TAGTGACTGCTGCACCTTTTTACATCCAGGAACCAACCGCAGCTCTGGGG
TAGCTCGGGTACTAACGAGGGGCGCATCCGACGGCTGCATCCACAGCAGT
CCCAGCAACCGCGGCAAAAATGAGAGCAACCCCGCCTTTGTTAGGGAGAT
CATGCAACCCACGGAGTCAGCCACCAGTGTTGCCGCCGCCTGTGAGGCGA
CGGTGGCGGACTTGAACCTGCAGCAACAGGTTTGTTTGTGTGCGGTATCC
TGATACTCAAGTACAATGTGTTCATTTGGTCGACGCCAGCGTGTCGGGTA
GGTGGTTGGCTGTACACATTGGCAACAGAAGTTCAAGTTTGACGGCCATT
CACTGCATCAAGCAACTGCTTGATTGGTGACACCTCTTCCTTCACTTCCA
CTTGCCCATCTGCACACAGTGCAGCTCAATGTTCTCTCTTGATGCCGAGG
ACGTCGGACGCTTGTAAACCACAAAGCAGTGACTCATCTCAGGTGGTCTC
GGACTATTGAGTCTAGTAACGCTTTCCCATTCGTTCGCTTGAAACGCGTG
TTGTCTTCTGTCCCTGAACGCATCAACAGGGTGTACACGGCGGCAGCAGA
AAACCCAGCAGTAGCGGCACCTCATTTCGTCGCGGAACCTTTGAAGCTGT
TCCGGAGGGCGAAGCTGCTGATAGCGGTGGTGTCGACAGGGGTGTTGCCG
GGACAAAGGAAAAGGAA
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Coding sequence (CDS) from alignment at Scaffold_493:125266..130182+

>EsuBft886_5a-0001 ID=EsuBft886_5a-0001|Name=EsuBft886_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=852bp|location=Sequence derived from alignment at Scaffold_493:125266..130182+ (Ectocarpus subulatus male Bft15b)
ATGTGTTGTATCATGGCTTCAGAGGTGACCGGGAACCCATCCATCGTGCT
GGGTATGTGTCGGGACTACTGGGATGGGAGCGCCATTTCGAACCTGCCGG
CCACCCTCCGCAAGACCATCCTCGACATGCACCAGCAGTGGAGTTTGGAA
GACCTAGACGTCGTCGCGTTCGCCTACGTCCCCGTGCCCTACACGGTGAA
CCCTTTCATCTCGTCCTTCAACAAGCACCCGGACTACCTCATCCACCTCA
GCCAGGGCCAAGCCTCCTCATCCGGAAAAGGGCGAAGCACCATCAGCGGC
GGCGGCGGCGGCGGCTCGCGGGCGGGAGCGAGTCCAGTCATCAGCCCGCT
TCCGTCCAGTTCACCACAGTTTCGAGGCGCTGACTGTACGCTTGGCATCA
TATCTGAGACGTGTAGCACTCACCAACAAGGCCACCACAATGCTGGAGGC
GATGTCGTCAGCAGCGGCACTGCCAACGACGATGACCCAAACAGTAAGGG
GGCCGAAGGCCCCGACAACTTTTCGCCGCCATTCCAAGAGGGGGGCGGCG
CGACAAAAGGGAGGGCGCAAAGGTTTCAAGGATCACCAGATAGGGGAGGT
TCCCCTTCAGCTGGAGCAGTAGCTGCCGAAACCACCAGCGACGGTGCCGA
GTCGTCAGCAGAAAAAGGGCAGCAGTCATCGGTTATCGGTGCTGCTCGAC
AGTGCTCATCGGCCAATTCATCACCGGTGCGCTCCAAACTGATGAAAGCC
ATCGCCGAAGAACCGGGATTTGAATCGGGATCGGAGAAGAATTATTCTCA
GGGTGAGGACGGCGAACCACAAGGCAAGAACAATGACGGCTTGCTGTTGT
AG
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