EsuBft886_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft886_4a-0001
Unique Name	EsuBft886_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_493	contig	Scaffold_493:115340..119121 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FY90
ProteomeId	EsuBft886_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	5
Max annot lvl	2759\|Eukaryota
Length	111
Hectar predicted targeting category	other localisation
Evalue	2.62e-165
EggNOG OGs	KOG4383@1\|root,KOG4383@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft886_4a	EsuBft886_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_493 115340..119121 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft886_4a-0001	EsuBft886_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_493 115340..119121 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft886_4a-0001-exon	agat-exon-67648	Ectocarpus subulatus male Bft15b	exon	Scaffold_493 115340..115557 +
EsuBft886_4a-0001-exon	agat-exon-67646	Ectocarpus subulatus male Bft15b	exon	Scaffold_493 116095..116534 +
EsuBft886_4a-0001-exon	agat-exon-67645	Ectocarpus subulatus male Bft15b	exon	Scaffold_493 116981..117186 +
EsuBft886_4a-0001-exon	agat-exon-67647	Ectocarpus subulatus male Bft15b	exon	Scaffold_493 117881..118039 +
EsuBft886_4a-0001-exon	EsuBft886_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_493 119035..119121 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft886_4a-0001-cds	EsuBft886_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_493 115340..115557 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_493:115340..119121+
coding sequence from alignment at Scaffold_493:115340..119121+

spliced messenger RNA

>EsuBft886_4a-0001 ID=EsuBft886_4a-0001|Name=EsuBft886_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1110bp|location=Sequence derived from alignment at Scaffold_493:115340..119121+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATCATTAGGGAAGCGAAAGGGAGCGCCGCCGCAGGCGCCGGTGC
TGCCGGTGGGATGAAATTTCAATCATCAGGAGAACCGGACCCGGAAGAGA
TCGTGGACGAGTTCGATTTGATGGACGCCGAGGAACGCGAAGAGGTGTTC
TCCGGAACGTCTCACACCGTGTCGTGGCGGAAGGCTCGGGCCTACCTGTG
TGCCGTCCTAACCGCGAGGTGGCGATGCGGGACCAAGAGTCGAGTGTACC
GCCACCGTCGTTCACAGGATGCGAGGACGCCGGCATTGGCATCGCCGGCA
GCGGCACCCGCCACGAACGCTGTGCGCCCAGCGGATTCTTCCGGCCCGGA
GCCTAGCGACATTGAAGCCGGGCGCGCCGCAGGGGAAGCATGTCGAAGGT
CAGCCGAGCCCAGTCCCGGAGAGCCTGCTGCGAGAAGCAGCGACCAAGGC
CGGGTGACCTCGAGCGATGTCAAGTCTGGAAGTAGGGATCAGGGTTTCAT
TCCATTCGCCTCATGGCGGCGGCGGCGGCGGTCTGGTGGTGCGGGGTCGG
GATGGAATAGTAGTGGTTTGATGGACTGGAGTGTGGCGCGGTGGCGTAAT
CTGTGTACTCGCGGCGGGACGGCGGCTGCCGGGGAACAACAGGATGACGT
CGATGCCGGGGGACAACAACACCAGACGCTACGGCAGCACCGGCGACAGC
GGCGCCGAAAGCAGTGGTGTCAGGATAGCTTCTTGCCCGTGCCGATGTTG
GGGTGCGGTCTAGTCGAGCGCCTCGGTGCCGTCACGACGCTTTGCATGCT
GGACGAGGACACGGTATGCGAGCCAACCTCAGCCATCAAGGAGGTTTTCC
TGGTAGACTCCAAGGCCAACGACGCCGGTGTCAGCACTACCGGGACCGTC
CTGGACATGCACACCCAGCAGGGCAAGAAAGGGGTTCGCTTCGAAGACCC
GCACTGGTGGACCCACCTCCCTGCCCTCAAGCCTATCGGCCTTACCTGCT
TGCTTGCCGAGAAGAATTCGGAGCAACCTCGGCAGCAATTCAAGAGGAGA
TCCGTTCCCAGCAGCCCTGATCTTGCCGAAGGCCGTTCCACTCAGTCTAC
CCAAACGTGA

protein sequence of EsuBft886_4a-0001

>EsuBft886_4 ID=EsuBft886_4|Name=EsuBft886_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=369bp
MEIIREAKGSAAAGAGAAGGMKFQSSGEPDPEEIVDEFDLMDAEEREEVF
SGTSHTVSWRKARAYLCAVLTARWRCGTKSRVYRHRRSQDARTPALASPA
AAPATNAVRPADSSGPEPSDIEAGRAAGEACRRSAEPSPGEPAARSSDQG
RVTSSDVKSGSRDQGFIPFASWRRRRRSGGAGSGWNSSGLMDWSVARWRN
LCTRGGTAAAGEQQDDVDAGGQQHQTLRQHRRQRRRKQWCQDSFLPVPML
GCGLVERLGAVTTLCMLDEDTVCEPTSAIKEVFLVDSKANDAGVSTTGTV
LDMHTQQGKKGVRFEDPHWWTHLPALKPIGLTCLLAEKNSEQPRQQFKRR
SVPSSPDLAEGRSTQSTQT

mRNA from alignment at Scaffold_493:115340..119121+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft886_4a-0001 ID=EsuBft886_4a-0001|Name=EsuBft886_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3782bp|location=Sequence derived from alignment at Scaffold_493:115340..119121+ (Ectocarpus subulatus male Bft15b)
ATGGAAATCATTAGGGAAGCGAAAGGGAGCGCCGCCGCAGGCGCCGGTGC
TGCCGGTGGGATGAAATTTCAATCATCAGGAGAACCGGACCCGGAAGAGA
TCGTGGACGAGTTCGATTTGATGGACGCCGAGGAACGCGAAGAGGTGTTC
TCCGGAACGTCTCACACCGTGTCGTGGCGGAAGGCTCGGGCCTACCTGTG
TGCCGTCCTAACCGCGAGGTGATGTACAGTCAAAAGTATCAATATGCGTG
TTTTCGCATTTACCCCGTACCGTTTCCTGGTCGGTGGTTTTGAAGATACC
AAAGTACGTTTCCATGGCTCTCCACAGGCAAGCCTCGAAATGAGTCTGGA
GCAATTGGTTGAAGGCTCAGAAGCCCCTCCCAACCCTTCGTGCAACGATA
TGGAATTAACGGGTACAGAAATGAAGCAGCTGCTGAATTTGTTGCATGTT
TCACTGTCTCGGGCCCAGATACCGTGGGGGTTTTCGAATGACACGGTAAT
ACATGCTTTTCCATGCAACGCGACAGCTATTAGAGCCTTGACGTAGTCGT
GCCTCGCTCGTCGCAAGAGGTTCAACTGTGGGAGCCCATTTTTAGTAGCC
GAAGCATTCGGAGAGAGGGAGGCACGGATCAGCTGCTTTGCATCAACAGA
CGCCGGCCTATCTATCTCAAGGTCAGAAGTTTCTGTCCTCGAACCTTGCC
CTCAGTTACACGGAACTACGCGCGCGCGTTTATTTCTACCCGCCCCCGTT
TTCAGGTGGCGATGCGGGACCAAGAGTCGAGTGTACCGCCACCGTCGTTC
ACAGGATGCGAGGACGCCGGCATTGGCATCGCCGGCAGCGGCACCCGCCA
CGAACGCTGTGCGCCCAGCGGATTCTTCCGGCCCGGAGCCTAGCGACATT
GAAGCCGGGCGCGCCGCAGGGGAAGCATGTCGAAGGTCAGCCGAGCCCAG
TCCCGGAGAGCCTGCTGCGAGAAGCAGCGACCAAGGCCGGGTGACCTCGA
GCGATGTCAAGTCTGGAAGTAGGGATCAGGGTTTCATTCCATTCGCCTCA
TGGCGGCGGCGGCGGCGGTCTGGTGGTGCGGGGTCGGGATGGAATAGTAG
TGGTTTGATGGACTGGAGTGTGGCGCGGTGGCGTAATCTGTGTACTCGCG
GCGGGACGGCGGCTGCCGGGGAACAACAGGATGACGTCGATGCCGGTGGG
GGCAGTGAGTGAAAATTATTCTGTCCTGTTCGTTCGCATTTCTTCGGGTA
GCTGAGGTACTCCATCAATGTTTGATGACTATTCTCCTTGAGTTTCCACC
TCACCGACCTAGCCCCCAAACTAAGCCGCCAGCGACGAACGGCAGCGAAC
TTCCCCTTAGGATGCTGTGGTGGTTGTCTTTTGCATTGCGGAACATTCTC
GCCTCTGTTCGATAGCCCGCAGGCACCGATTCCTAGACGTGGCGGCACCT
CTGCGCGCTTGTAGGGTACTCAAAGAAACCCTTCAAGGGAATGAACGACA
CAGTTACTACGAGAATGTGATGAGGAACGGCTAACATCCGTCAACGGTGC
CTGATTCTGGGCAATTTTCTACTTCGTTAACCCTGGGCCTAGTTTCCTCT
CACGAACGTCGCAAATGCTTTTCTTGCACTATTCTCCTCAGGGGGACAAC
AACACCAGACGCTACGGCAGCACCGGCGACAGCGGCGCCGAAAGCAGTGG
TGTCAGGATAGCTTCTTGCCCGTGCCGATGTTGGGGTGCGGTCTAGTCGA
GCGCCTCGGTGCCGTCACGACGCTTTGCATGCTGGACGAGGACACGGTAT
GCGAGCCAACCTCAGCCATCAAGGAGGTTTTCCTGGTAGACTCCAAGGTG
TGTACGTGGGCAATATTGTTGATGTTGTTGTTGGTGTTGTTGTTGTTGAT
GATGATGATAACTTGCGGTGATTATGGTGCTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGGTGTTGATGTTGGTGTTGGTGTTGGTGTTGTTTTCCGGGAT
CTGCTGCTGTAGCTGGCGCTGTTGTGCGGCAGTCTGTTTTTTTTTTTCCG
CTGCGGTTGTCAACTCCCGCTGCTAGAGCCTGTTCTGACCTCTAGGCGCA
CGTCGCACGCACGAAAAAACGACGCTGTTCCGTCACCACGAAAGCTATTG
AACTACGTTTTGCGCTGATTCCTGGAGAGACACGCGCGGGCGGGACAATG
ACACCGGTGGCTGTAGCAGGACCACCTTAAGCGGCAGAGAGATGGCACCT
CCCCTTCGACCCACAAGCTCAATTTTCTCACAACCAAGGGGCTGCAGAGA
GATCCCGATACGTCTTCCGTCGACGAGATGTTGCCGAACCCAACATTTTT
GGTACTGGCACAAGCTTTGCTGTGGAGCAATCGGTCCAGGGTGTGCTATA
TTGTATCACCTACGGTATCCTCGTCCTTGGCCTACCTTTCCGCACACATT
TCGTAACGAGCATCTATGGGCTTTCCAAACGAAGTTATATTAAGCAGTTG
TTCAAACCGCTTTGGCATTACTTTGGAATTTGGTCAAGCAGGCCAACGAC
GCCGGTGTCAGCACTACCGGGACCGTCCTGGACATGCACACCCAGCAGGG
CAAGAAAGGGGTTCGCTTCGAAGACCCGCACTGGTGGACCCACCTCCCTG
CCCTCAAGCCTATCGGCCTTACCTGCTTGCTTGCCGAGAAGAATTCGGAG
GTAAGAGTTTGGATTCCTCTCACAAAGTTCAGAACAAAGTTTGCCCTTGC
AAACTCCCTGCCCCCCGGCTTTGTACATCGGCAAGTGAGATTTTCTGCAG
CTGGTTGTCGTGCAGGGTTTGTGAAACCGCCTTTTGCAGAGCCGTTTCGG
CTGTCAATGGGCGTCTGGTTTCACGCTTGTGCTTCTTCAGCGAGATCAGG
TGTTGTACGCTGAAGAGTCAGCAGAAAGGGGGGGGTACTAAACAGAAATC
GGGGCGTTTTGTTTCATTGCGTATATGCCGACAGCGGTGGCGACAATGAT
AACGGAAAGAAAAGCGACGAAAATGACAACAGGACCAGCAGCAAACACCA
ACAGCTAGCGTCATCGTTTTCTGTAGAAAGGCAGCAGTCACGACAGCGTC
CGTCTTTATCCTGCAACGCATGTAAGAGAATGTCATCGAAAGTGAAGCTA
AGCAGCAACCAACGTGAGTCGTCAGTCTCTACCCGAGAGCCCAGACCTTG
TTGCGTAGGGTTTGTCTCTGTCCCGTCCTCGCTCATCTGCGCGTTCATTA
GATTCCGATCACGTTTTGTAGGTATGATGTTGGTGCTGTTTTGCGTGTCG
TTATGTCTTGGGGGAGCCTCAACCAACCAAGACCGTGTCGTCGCAACGTA
AAGGTTTGCAATCGCCCACGCTATGAAAGAGCGACAGCAGGGTATTGGCA
AAGCAATGGCTTCTGCCCGGAGAGTGAACCGCACTTGCTCTTGCAGCTCG
ATCTTGGCCCCTTTCATCTCTTTTTTTTCTGAACCGATTTCCGGTATGAC
AACCCCGGCAGCAGGAGGAATTCCGTACTCAGCAGCCCCGTACTCGGCTG
TCCACGTAGTTCTTGCTCGGATACCCCAGTATTTAACGGCATGGCAAAAT
CGTTTTTTTCCCGTAAGCCTGGGGTTGTTTTGTCTGCGCCTTTGCCTACG
CATTTAGCAACCTGCCCTTGTCTTCTGCATCTATTTCTGGTACAGCAACC
TCGGCAGCAATTCAAGAGGAGATCCGTTCCCAGCAGCCCTGATCTTGCCG
AAGGCCGTTCCACTCAGTCTACCCAAACGTGA

Coding sequence (CDS) from alignment at Scaffold_493:115340..119121+

>EsuBft886_4a-0001 ID=EsuBft886_4a-0001|Name=EsuBft886_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1110bp|location=Sequence derived from alignment at Scaffold_493:115340..119121+ (Ectocarpus subulatus male Bft15b)
ATGGAAATCATTAGGGAAGCGAAAGGGAGCGCCGCCGCAGGCGCCGGTGC
TGCCGGTGGGATGAAATTTCAATCATCAGGAGAACCGGACCCGGAAGAGA
TCGTGGACGAGTTCGATTTGATGGACGCCGAGGAACGCGAAGAGGTGTTC
TCCGGAACGTCTCACACCGTGTCGTGGCGGAAGGCTCGGGCCTACCTGTG
TGCCGTCCTAACCGCGAGGTGGCGATGCGGGACCAAGAGTCGAGTGTACC
GCCACCGTCGTTCACAGGATGCGAGGACGCCGGCATTGGCATCGCCGGCA
GCGGCACCCGCCACGAACGCTGTGCGCCCAGCGGATTCTTCCGGCCCGGA
GCCTAGCGACATTGAAGCCGGGCGCGCCGCAGGGGAAGCATGTCGAAGGT
CAGCCGAGCCCAGTCCCGGAGAGCCTGCTGCGAGAAGCAGCGACCAAGGC
CGGGTGACCTCGAGCGATGTCAAGTCTGGAAGTAGGGATCAGGGTTTCAT
TCCATTCGCCTCATGGCGGCGGCGGCGGCGGTCTGGTGGTGCGGGGTCGG
GATGGAATAGTAGTGGTTTGATGGACTGGAGTGTGGCGCGGTGGCGTAAT
CTGTGTACTCGCGGCGGGACGGCGGCTGCCGGGGAACAACAGGATGACGT
CGATGCCGGGGGACAACAACACCAGACGCTACGGCAGCACCGGCGACAGC
GGCGCCGAAAGCAGTGGTGTCAGGATAGCTTCTTGCCCGTGCCGATGTTG
GGGTGCGGTCTAGTCGAGCGCCTCGGTGCCGTCACGACGCTTTGCATGCT
GGACGAGGACACGGTATGCGAGCCAACCTCAGCCATCAAGGAGGTTTTCC
TGGTAGACTCCAAGGCCAACGACGCCGGTGTCAGCACTACCGGGACCGTC
CTGGACATGCACACCCAGCAGGGCAAGAAAGGGGTTCGCTTCGAAGACCC
GCACTGGTGGACCCACCTCCCTGCCCTCAAGCCTATCGGCCTTACCTGCT
TGCTTGCCGAGAAGAATTCGGAGCAACCTCGGCAGCAATTCAAGAGGAGA
TCCGTTCCCAGCAGCCCTGATCTTGCCGAAGGCCGTTCCACTCAGTCTAC
CCAAACGTGA