EsuBft886_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft886_3a-0001
Unique Name	EsuBft886_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_493	contig	Scaffold_493:101871..104736 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FY91
ProteomeId	EsuBft886_3
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	TMhelix
Protein domains	IPR002110
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	PTHR24198
Protein domains	IPR020683
Protein domains	TRANSMEMBRANE
Owner	apollo_admin@sb-roscoff.fr
Note	ankyrin repeat protein mm [Automatic annotation]
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	1458
Hectar predicted targeting category	other localisation
Evalue	2.09e-235
EggNOG OGs	COG0666@1\|root,KOG4177@2759\|Eukaryota
Ec32 ortholog description	EsV-1-199-related ankyrin repeat protein
Ec32 ortholog	Ec-24_003360.1
Date last modified	2016-06-14
Date creation	2016-06-14
Description	spectrin binding
COG category	I

Cross References

External references for this mRNA


Database	Accession
GO	0086065
GO	0031227
GO	0032412
GO	0072659
GO	0050896
GO	0051924
GO	0043231
GO	0048731
GO	0098589
GO	0055117
GO	0051050
GO	0016020
GO	0043232
GO	0043005
GO	0086001
GO	0044459

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft886_3a	EsuBft886_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_493 101871..104736 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft886_3a-0001-exon	agat-exon-67643	Ectocarpus subulatus male Bft15b	exon	Scaffold_493 101871..102117 -
EsuBft886_3a-0001-exon	EsuBft886_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_493 103459..104108 -
EsuBft886_3a-0001-exon	agat-exon-67644	Ectocarpus subulatus male Bft15b	exon	Scaffold_493 104176..104736 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft886_3a-0001-cds	EsuBft886_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_493 101871..102117 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft886_3a-0001	EsuBft886_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_493 101871..104736 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_493:101871..104736-
coding sequence from alignment at Scaffold_493:101871..104736-

spliced messenger RNA

>EsuBft886_3a-0001 ID=EsuBft886_3a-0001|Name=EsuBft886_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1458bp|location=Sequence derived from alignment at Scaffold_493:101871..104736- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCCACCACTTCCCACACAGGGTTGGCCTCGAGGCCCTATGAATGA
GCTTCATTTGGCCGCGATGAACGGCTCCTCTGAGCGCGCACTAGCCTTGC
TGTCGAGCCGAGACCCGATCGATGTCAACCAAGGAGACTCGGCGGGCTGC
ACCCCGCTCATGCTGGCCACCACAAACGGCCACCCGCGAGTTGTCAGGAT
CCTGCTGAATCATGGGGCCAACATGTCCATCGTCGATGACGTCGGTAGCG
ATGCGCTACTAAAGTCGGCTGTTGTAGGGCACTCGGCTGTGACCAAGATG
TTGGTGAAGGCGAGTGCTAACCTCGAGGCGGCTGATTTCGACGGCGCCAC
ACCGCTTCATCTCGCTGCGACATGCGGGAACTCGGAGGTGATGAGAGTGC
TGATCGAAGCAGGCGCGGAGGTCGACAGCCGCATGACCACCGGGTCGACG
CCCCTCTGCACCGCGGCTAGTTTCGGGCACACCAGCGCGGTGATCCGGCT
GATTCACGCGAATGCGGACCCGCTGTTGGGCAACGTGTTACCTACCATCA
ACAGGAGGAGTCGGCTGGGAATCGAACGCTGCGGCGGTGAAAGCCGCGGT
GTCGACGCGCTCTGCCTGGCAGTGAAGGGGCGGCACGTGGGTATCGTGGC
CATGCTGGCGCACGCCGGAGTGGTAGACAAGGGCAGTGCCCTGGCCGCCG
CCGCCGCACAAGGGTACGAAGCATCCGTGAAGTTCCTGCTGCGGCAGCAC
GAGGGGAAACCCTCCGGGAGTGGAAGCGCTTATGTAAACAAGTTCAATCG
ATTCGGCCTGACACCCTTGCTAGAAAACATCAACTGCGGCCACTGTTCTG
CGAGGATTGTTCGGTTGCTCGTGGATGCCGGCGCGGACACGACTGCCGCC
TTTCGACTCACCGGTAAGAAAGGGCAGGCGATAGCGGCAACCACGCAGCT
CACCGCCATGGAGTGTCTCGTCCTTGAGAAAAGGGCCAAAGGGGATACGG
GAGAGCAGCGGCACAACCTACAGGCCACCTTCCGATTGCTGTTGCAAGTA
GAGGCCGCTCATGCCATCTCCTGGGTGTGGCCGACCGGTTCCCACTCCGT
CGACCGCCCTCCACGTGGTCAGAGCAGGGCTGAAGCACCAGTAAGGCTGA
CGTTGCCGATGACGAGGAGGGATACCGGGACGCGTCGCGCACTCTTGGGG
GCCATGTCAAGGTACTCGGGAAAGTCGATGTACTCGCAGGGAGGTGGTGG
AAAGCAGCAGAAGGACCCATCTTGGAGTGTTAGGGCTGTCGCATTGGCGC
TAGTGCGGGGCAATACCGGCCTTTCCTTCATTCTAGGGGTGGAGTTCGTC
TTCGTTCTGATGTTCGGGGCAATAGCGGCTGGTTGGCATGGGACGGTGCA
AGCGCTCTTCGCCAAGGAATGGCTGGTCTTCCTTAGTGTGTTGATCTGGG
CGTGGTGA

protein sequence of EsuBft886_3a-0001

>EsuBft886_3 ID=EsuBft886_3|Name=EsuBft886_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=485bp
MPPPLPTQGWPRGPMNELHLAAMNGSSERALALLSSRDPIDVNQGDSAGC
TPLMLATTNGHPRVVRILLNHGANMSIVDDVGSDALLKSAVVGHSAVTKM
LVKASANLEAADFDGATPLHLAATCGNSEVMRVLIEAGAEVDSRMTTGST
PLCTAASFGHTSAVIRLIHANADPLLGNVLPTINRRSRLGIERCGGESRG
VDALCLAVKGRHVGIVAMLAHAGVVDKGSALAAAAAQGYEASVKFLLRQH
EGKPSGSGSAYVNKFNRFGLTPLLENINCGHCSARIVRLLVDAGADTTAA
FRLTGKKGQAIAATTQLTAMECLVLEKRAKGDTGEQRHNLQATFRLLLQV
EAAHAISWVWPTGSHSVDRPPRGQSRAEAPVRLTLPMTRRDTGTRRALLG
AMSRYSGKSMYSQGGGGKQQKDPSWSVRAVALALVRGNTGLSFILGVEFV
FVLMFGAIAAGWHGTVQALFAKEWLVFLSVLIWAW

mRNA from alignment at Scaffold_493:101871..104736-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft886_3a-0001 ID=EsuBft886_3a-0001|Name=EsuBft886_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2866bp|location=Sequence derived from alignment at Scaffold_493:101871..104736- (Ectocarpus subulatus male Bft15b)
ATGCCCCCACCACTTCCCACACAGGGTTGGCCTCGAGGCCCTATGAATGA
GCTTCATTTGGCCGCGATGAACGGCTCCTCTGAGCGCGCACTAGCCTTGC
TGTCGAGCCGAGACCCGATCGATGTCAACCAAGGAGACTCGGCGGGCTGC
ACCCCGCTCATGCTGGCCACCACAAACGGCCACCCGCGAGTTGTCAGGAT
CCTGCTGAATCATGGGGCCAACATGTCCATCGTCGATGACGTCGGTAGCG
ATGCGCTACTAAAGTCGGCTGTTGTAGGGCACTCGGCTGTGACCAAGATG
TTGGTGAAGGCGAGTGCTAACCTCGAGGCGGCTGATTTCGACGGCGCCAC
ACCGCTTCATCTCGCTGCGACATGCGGGAACTCGGAGGTGATGAGAGTGC
TGATCGAAGCAGGCGCGGAGGTCGACAGCCGCATGACCACCGGGTCGACG
CCCCTCTGCACCGCGGCTAGTTTCGGGCACACCAGCGCGGTGATCCGGCT
GATTCACGCGAATGCGGACCCGCTGTTGGGCAACGTGTTACCTACCATCA
ACAGGAGGAGTGTATTTCCTCCCGTTGGACGTGGCAGCGCACTTCGGGCA
CTCGGCGGTGGTACGCGAGTTACTCCAGCGGCTGGGAATCGAACGCTGCG
GCGGTGAAAGCCGCGGTGTCGACGCGCTCTGCCTGGCAGTGAAGGGGCGG
CACGTGGGTATCGTGGCCATGCTGGCGCACGCCGGAGTGGTAGACAAGGG
CAGTGCCCTGGCCGCCGCCGCCGCACAAGGGTACGAAGCATCCGTGAAGT
TCCTGCTGCGGCAGCACGAGGGGAAACCCTCCGGGAGTGGAAGCGCTTAT
GTAAACAAGTTCAATCGATTCGGCCTGACACCCTTGCTAGAAAACATCAA
CTGCGGCCACTGTTCTGCGAGGATTGTTCGGTTGCTCGTGGATGCCGGCG
CGGACACGACTGCCGCCTTTCGACTCACCGGTAAGAAAGGGCAGGCGATA
GCGGCAACCACGCAGCTCACCGCCATGGAGTGTCTCGTCCTTGAGAAAAG
GGCCAAAGGGGATACGGGAGAGCAGCGGCACAACCTACAGGCCACCTTCC
GATTGCTGTTGCAAGTAGAGGCCGCTCATGCCATCTCCTGGGTGTGGCCG
ACCGGTTCCCACTCCGTCGACCGCCCTCCACGTGGTCAGAGCAGGGCTGA
AGCACCAGTAAGGCTGACGTTGCCGATGACGAGGAGGGATACCGGGACGC
GTCGCGCACTCTTGGGGGCCATGTCAAGGTGTGTGCAGACATGGTTGGGC
ATCGCCATAGGCCATTTGTAATTGTGTTGACGCCCGAAGACTGCTGTGTT
GGCGTGCCATCTCATGTAGTTGCTTGTTTTTTTCTTGCCTGCTGAGGAGA
CTGCCATGCATCGATGATGCCAACATTGTCTCTTTGTAGACTAAACACTA
CAGTTTTTGTCAGTGACGACACAACGCGTATGTGATCCTACCTCCCTTTC
AGAAGCCGGCGCACTAAACCCGAAAAAACAACTATTTTGCCCCAATGTAG
TCTAGTTCGAAATGTACATTTTTGTGCACCGCAAGAACATTTAGTTCTTG
CTCCAAGCTGGTCCGATTCAGAATGAATCAACACACACGGCTTGCAGAGG
AGCTTATTGCCCTCTGTGCTGCCTTTTTTTGGTGGGTTGTTTTTGCCTGC
GAAGTTGCTTCCCGCCCTAGAGGTTTCCACATCTGTAACTTCTTCATATA
GTAAACGAGGTCCCTCACCCCCCCCAGAAGTGTGCAATCTCCCACACTAC
TGACAGTTGCAAAACTGCCCATGGGACACCCATGGGTCATCCATGAAGTG
CCCGCCGTGGGCACTTCAGTTTAGCACTTCGCCACCGGCATTTCAACCTA
GAACTTGGCCACCAGCGCCAACCTAGCATGTTAGGGCTACGGTTGGCGTT
AGGGTTATTAGCCGCTAAAGCGCCCGTTCCAAAGCAGATAGTCTATTTCT
TAGGAGTACACTGGTTCGGTTGAAGGGCTATCATTGGCCGAACATTAGCT
GCCCACGGGCAACCCATGGGTGACCCATGGGCCTAACGGGGTGCCCATGG
GCGGCCCATGGGTCACCCATGCGTGTCCCGTGGGTCATCAGGGAAAACCG
TAGAAAGTATGGGAGCCCCGTAGTGTGGAGGGTCAGTAGGACTCAACACC
GCTTGGAATTGGACGAACGTATGTGCGTCTCTGCATAGCCAACGATCACG
AAACGCTCGAGCCGCGCAGAAATAACGGGAAATGCAGTCTCATTCTTTCC
CTACGCAGTTCCTACTAGAGTTCAGCGGGCCGGACGTACCTGGTTGACAT
TGCCCTGCTTTCTGACCCTGTCGCGATGTCGCACACGTTTGTAGATACAC
AAGAACCGCGAATTGTCCCTCTCAATCTATCGTCCATGTATTTACCTCCT
TGTTCGACCACAACGAACGGTTCGCCGCCCCGTTTGTTGTCGAGGAGAGT
ATCACAACCTCCTGCCAACGCTTTGATCTTGTGATACGGCGCTCAGCCAT
TGTGCATCTCGCGTTCCCACCAACCCCATTCTACCATTCTGCCATAAACT
TCCGCCTACCGCGTTTTAGGTACTCGGGAAAGTCGATGTACTCGCAGGGA
GGTGGTGGAAAGCAGCAGAAGGACCCATCTTGGAGTGTTAGGGCTGTCGC
ATTGGCGCTAGTGCGGGGCAATACCGGCCTTTCCTTCATTCTAGGGGTGG
AGTTCGTCTTCGTTCTGATGTTCGGGGCAATAGCGGCTGGTTGGCATGGG
ACGGTGCAAGCGCTCTTCGCCAAGGAATGGCTGGTCTTCCTTAGTGTGTT
GATCTGGGCGTGGTGA

Coding sequence (CDS) from alignment at Scaffold_493:101871..104736-

>EsuBft886_3a-0001 ID=EsuBft886_3a-0001|Name=EsuBft886_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1458bp|location=Sequence derived from alignment at Scaffold_493:101871..104736- (Ectocarpus subulatus male Bft15b)
ATGCCCCCACCACTTCCCACACAGGGTTGGCCTCGAGGCCCTATGAATGA
GCTTCATTTGGCCGCGATGAACGGCTCCTCTGAGCGCGCACTAGCCTTGC
TGTCGAGCCGAGACCCGATCGATGTCAACCAAGGAGACTCGGCGGGCTGC
ACCCCGCTCATGCTGGCCACCACAAACGGCCACCCGCGAGTTGTCAGGAT
CCTGCTGAATCATGGGGCCAACATGTCCATCGTCGATGACGTCGGTAGCG
ATGCGCTACTAAAGTCGGCTGTTGTAGGGCACTCGGCTGTGACCAAGATG
TTGGTGAAGGCGAGTGCTAACCTCGAGGCGGCTGATTTCGACGGCGCCAC
ACCGCTTCATCTCGCTGCGACATGCGGGAACTCGGAGGTGATGAGAGTGC
TGATCGAAGCAGGCGCGGAGGTCGACAGCCGCATGACCACCGGGTCGACG
CCCCTCTGCACCGCGGCTAGTTTCGGGCACACCAGCGCGGTGATCCGGCT
GATTCACGCGAATGCGGACCCGCTGTTGGGCAACGTGTTACCTACCATCA
ACAGGAGGAGTCGGCTGGGAATCGAACGCTGCGGCGGTGAAAGCCGCGGT
GTCGACGCGCTCTGCCTGGCAGTGAAGGGGCGGCACGTGGGTATCGTGGC
CATGCTGGCGCACGCCGGAGTGGTAGACAAGGGCAGTGCCCTGGCCGCCG
CCGCCGCACAAGGGTACGAAGCATCCGTGAAGTTCCTGCTGCGGCAGCAC
GAGGGGAAACCCTCCGGGAGTGGAAGCGCTTATGTAAACAAGTTCAATCG
ATTCGGCCTGACACCCTTGCTAGAAAACATCAACTGCGGCCACTGTTCTG
CGAGGATTGTTCGGTTGCTCGTGGATGCCGGCGCGGACACGACTGCCGCC
TTTCGACTCACCGGTAAGAAAGGGCAGGCGATAGCGGCAACCACGCAGCT
CACCGCCATGGAGTGTCTCGTCCTTGAGAAAAGGGCCAAAGGGGATACGG
GAGAGCAGCGGCACAACCTACAGGCCACCTTCCGATTGCTGTTGCAAGTA
GAGGCCGCTCATGCCATCTCCTGGGTGTGGCCGACCGGTTCCCACTCCGT
CGACCGCCCTCCACGTGGTCAGAGCAGGGCTGAAGCACCAGTAAGGCTGA
CGTTGCCGATGACGAGGAGGGATACCGGGACGCGTCGCGCACTCTTGGGG
GCCATGTCAAGGTACTCGGGAAAGTCGATGTACTCGCAGGGAGGTGGTGG
AAAGCAGCAGAAGGACCCATCTTGGAGTGTTAGGGCTGTCGCATTGGCGC
TAGTGCGGGGCAATACCGGCCTTTCCTTCATTCTAGGGGTGGAGTTCGTC
TTCGTTCTGATGTTCGGGGCAATAGCGGCTGGTTGGCATGGGACGGTGCA
AGCGCTCTTCGCCAAGGAATGGCTGGTCTTCCTTAGTGTGTTGATCTGGG
CGTGGTGA