EsuBft886_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft886_11a-0001
Unique Name	EsuBft886_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_493	contig	Scaffold_493:192472..193723 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4538.ORGLA12G0123700.1
ProteomeId	EsuBft886_11
Protein domains	IPR013103
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon	2
Max annot lvl	35493\|Streptophyta
Length	1115
Hectar predicted targeting category	other localisation
Evalue	8.77e-23
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,3M2IR@4447\|Liliopsida,3IKX9@38820\|Poales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0043170
GO	0003824
GO	0044238

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft886_11a	EsuBft886_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_493 192472..193723 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft886_11a-0001-exon	EsuBft886_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_493 192472..192849 +
EsuBft886_11a-0001-exon	agat-exon-67696	Ectocarpus subulatus male Bft15b	exon	Scaffold_493 192987..193723 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft886_11a-0001-exon	agat-five_prime_utr-14685	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_493 192472..192657 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft886_11a-0001-cds	EsuBft886_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_493 192658..192849 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft886_11a-0001-exon	agat-three_prime_utr-22694	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_493 193578..193723 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft886_11a-0001	EsuBft886_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_493 192658..193577 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_493:192472..193723+
coding sequence from alignment at Scaffold_493:192472..193723+

spliced messenger RNA

>EsuBft886_11a-0001 ID=EsuBft886_11a-0001|Name=EsuBft886_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1115bp|location=Sequence derived from alignment at Scaffold_493:192472..193723+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGTGGACGGCGGTAGCGGTTTCTGATTCCGGCGACTCCGAGAACCTCGA
GGAGTTGAAGTATGATCCAGCCGACGACCGCTACCCCCGCGGGCTAGAAG
GGAAGAAACTCCTCTGGGGCGCCTCGAACGCTGGCCCGCTGCGCCATGGG
CTTGAGAGTGGCCGCACGCGGAAGCAGACCCGGGAGATGCAAGGTGCCGG
GGAGATGCCGGGGCCCGGAGAAACATCGTACCCGGAAGAGGCACTGCTGG
CGACCATCCTGGAAACTGGCGGGACGGGGATTGTTGAGGACTACATGTGC
AACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAGACACGCCGTATGGA
GGAGATGTACAGGCGCAAGATGCAGGAGGAGGTGTTGGGCCCGGAACATC
AGGTGTTCGGGGCCGAGGTCGACGCCAGCTGGTCTTCACAACCACTCCCA
GACCCACAGCTAAGTATGACCTCGCCAATCAGGCAGCAGCCGAGTGATGT
GGAAGCAGTACCGATGACGTACAAGGATATGATGTGTTCCAAGTACAAGT
TTTTGTGGGAGGCGGCCATGAAGAAAGAGATAGATGGCCACGACAAGACT
GGAACCTTTACCAAGGTCAAGGAGCTGCCCGAGGGGCGGAAGGCCATAGG
TTCAAAGTGGGTGTTCGCTTTGAAGACGAATAAGGAGGGCCTGATAGTCG
ACTTCAAGGCCCGTATGGTTGCGCGGGGTTTCTCTCAAATCCCCGGCATC
GACTTCCACCACTCATCCTCAGCGTGCCCGTCTGCAGCGTCTATCAAGAC
GGTGATTGCCGTAGCCACTGAAAAGGGCAAGAAACTCGCTCACTGGGATG
AGAAGCAAGCGTACATCCACGCTAAGCTACAACAACAAATATACCTCAGG
TTCCCGGAAGGCGCTGTGGCAGCATGTCCGGCAAGGTGGTCAAGGTTGAG
CGTGCCCTGTATGGCCTAAAGCAGAGTGGCCGTGAGTGGGGGTTTGAAGC
TGCCGATGCCCTCATCGAGAATAGAAACGAGCAGTGCAGGGTTGACCCGT
GTGTCTTCCGGAAGGTGGTGGATGGAGAGGTCGTAGGTCTCATCGTGATC
TACGTTGATAACATC

protein sequence of EsuBft886_11a-0001

>EsuBft886_11 ID=EsuBft886_11|Name=EsuBft886_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=260bp
MQGAGEMPGPGETSYPEEALLATILETGGTGIVEDYMCNSLVKEQWDEEQ
TRRMEEMYRRKMQEEVLGPEHQVFGAEVDASWSSQPLPDPQLSMTSPIRQ
QPSDVEAVPMTYKDMMCSKYKFLWEAAMKKEIDGHDKTGTFTKVKELPEG
RKAIGSKWVFALKTNKEGLIVDFKARMVARGFSQIPGIDFHHSSSACPSA
ASIKTVIAVATEKGKKLAHWDEKQAYIHAKLQQQIYLRFPEGAVAACPAR
WSRLSVPCMA

mRNA from alignment at Scaffold_493:192472..193723+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft886_11a-0001 ID=EsuBft886_11a-0001|Name=EsuBft886_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1252bp|location=Sequence derived from alignment at Scaffold_493:192472..193723+ (Ectocarpus subulatus male Bft15b)
GTGTGGACGGCGGTAGCGGTTTCTGATTCCGGCGACTCCGAGAACCTCGA
GGAGTTGAAGTATGATCCAGCCGACGACCGCTACCCCCGCGGGCTAGAAG
GGAAGAAACTCCTCTGGGGCGCCTCGAACGCTGGCCCGCTGCGCCATGGG
CTTGAGAGTGGCCGCACGCGGAAGCAGACCCGGGAGATGCAAGGTGCCGG
GGAGATGCCGGGGCCCGGAGAAACATCGTACCCGGAAGAGGCACTGCTGG
CGACCATCCTGGAAACTGGCGGGACGGGGATTGTTGAGGACTACATGTGC
AACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAGACACGCCGTATGGA
GGAGATGTACAGGCGCAAGATGCAGGAGGTGTTGGGCCCGGAACATCAGG
TGTTCGGGGCCGAGGTCGACGCCAGCTGGTCTTCACAACCACTCCCAGAC
CCACAGCTAAGTATGACCTCGCCAATCAGGCAGCANTGGAGGAGATGTAC
AGGCGCAAGATGCAGGAGGTGTTGGGCCCGGAACATCAGGTGTTCGGGGC
CGAGGTCGACGCCAGCTGGTCTTCACAACCACTCCCAGACCCACAGCTAA
GTATGACCTCGCCAATCAGGCAGCAGCCGAGTGATGTGGAAGCAGTACCG
ATGACGTACAAGGATATGATGTGTTCCAAGTACAAGTTTTTGTGGGAGGC
GGCCATGAAGAAAGAGATAGATGGCCACGACAAGACTGGAACCTTTACCA
AGGTCAAGGAGCTGCCCGAGGGGCGGAAGGCCATAGGTTCAAAGTGGGTG
TTCGCTTTGAAGACGAATAAGGAGGGCCTGATAGTCGACTTCAAGGCCCG
TATGGTTGCGCGGGGTTTCTCTCAAATCCCCGGCATCGACTTCCACCACT
CATCCTCAGCGTGCCCGTCTGCAGCGTCTATCAAGACGGTGATTGCCGTA
GCCACTGAAAAGGGCAAGAAACTCGCTCACTGGGATGAGAAGCAAGCGTA
CATCCACGCTAAGCTACAACAACAAATATACCTCAGGTTCCCGGAAGGCG
CTGTGGCAGCATGTCCGGCAAGGTGGTCAAGGTTGAGCGTGCCCTGTATG
GCCTAAAGCAGAGTGGCCGTGAGTGGGGGTTTGAAGCTGCCGATGCCCTC
ATCGAGAATAGAAACGAGCAGTGCAGGGTTGACCCGTGTGTCTTCCGGAA
GGTGGTGGATGGAGAGGTCGTAGGTCTCATCGTGATCTACGTTGATAACA
TC

Coding sequence (CDS) from alignment at Scaffold_493:192472..193723+

>EsuBft886_11a-0001 ID=EsuBft886_11a-0001|Name=EsuBft886_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=783bp|location=Sequence derived from alignment at Scaffold_493:192472..193723+ (Ectocarpus subulatus male Bft15b)
ATGCAAGGTGCCGGGGAGATGCCGGGGCCCGGAGAAACATCGTACCCGGA
AGAGGCACTGCTGGCGACCATCCTGGAAACTGGCGGGACGGGGATTGTTG
AGGACTACATGTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAG
ACACGCCGTATGGAGGAGATGTACAGGCGCAAGATGCAGGAGGAGGTGTT
GGGCCCGGAACATCAGGTGTTCGGGGCCGAGGTCGACGCCAGCTGGTCTT
CACAACCACTCCCAGACCCACAGCTAAGTATGACCTCGCCAATCAGGCAG
CAGCCGAGTGATGTGGAAGCAGTACCGATGACGTACAAGGATATGATGTG
TTCCAAGTACAAGTTTTTGTGGGAGGCGGCCATGAAGAAAGAGATAGATG
GCCACGACAAGACTGGAACCTTTACCAAGGTCAAGGAGCTGCCCGAGGGG
CGGAAGGCCATAGGTTCAAAGTGGGTGTTCGCTTTGAAGACGAATAAGGA
GGGCCTGATAGTCGACTTCAAGGCCCGTATGGTTGCGCGGGGTTTCTCTC
AAATCCCCGGCATCGACTTCCACCACTCATCCTCAGCGTGCCCGTCTGCA
GCGTCTATCAAGACGGTGATTGCCGTAGCCACTGAAAAGGGCAAGAAACT
CGCTCACTGGGATGAGAAGCAAGCGTACATCCACGCTAAGCTACAACAAC
AAATATACCTCAGGTTCCCGGAAGGCGCTGTGGCAGCATGTCCGGCAAGG
TGGTCAAGGTTGAGCGTGCCCTGTATGGCCTAA