EsuBft885_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft885_8a-0001
Unique NameEsuBft885_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_84contigScaffold_84:56009..56789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft885_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length78
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft885_8aEsuBft885_8aEctocarpus subulatus male Bft15bgeneScaffold_84 56009..56789 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_8a-0001-exonEsuBft885_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_84 56009..56789 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_8a-0001-exonagat-five_prime_utr-14684Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_84 56009..56027 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_8a-0001-cdsEsuBft885_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_84 56028..56405 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_8a-0001-exonagat-three_prime_utr-22690Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_84 56406..56789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_8a-0001EsuBft885_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_84 56028..56405 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft885_8a-0001 ID=EsuBft885_8a-0001|Name=EsuBft885_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=781bp|location=Sequence derived from alignment at Scaffold_84:56009..56789+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCGCGTGTTCGCGACTCTGATGGCCAAGAACAAGGAAAGCGTCACCGAAA
TAATGAGGACGGTTCCACACGCCAAAGCCTTGGAGATACAGGCTGAACTG
GACAAGTGGGTGAGGTTCCAGCTTGCCGAAGCTACCGGCGAGAACAAGAG
CGGTAATTCAGCGCAGGTAAAAGCGAAAGGGAGGCCTAAGAAATCCAAGT
CGGAGGGATCAAAGCAGGACCGACACGATGACAACGGTGCGCCTGCCGAC
AGCGGGTCTGTTCAACCAGTCGGTAACCCGGAAGGGCGGAGGGACAAGAG
TCGGAGGGAAAAGAGGATCAAAGAGGTCTGGTGCTGGGTCTGGAGCAACG
ACCCGTCGGCCTACCAAAGAGAAAACGTCGTAGCTTACAACACGTAGTCC
CTAGTAACAAATCAACGGCCGCGACACGTAGATAGTTCGAATCGTGTGCC
GCCCTTGCCATCTCGTTCCCGGCGTTGCCAGTCCATATCATCTCGTGCGT
GCTAACGCTGCACAGATACTAGCGGGCAATGCAGGCTGAGCCTGATGTTT
GGAATTGCACACGACAAAGTACGCGCTATGCGTGCTATCTGGCCTTATCT
GTCTGCGCGTTTTTCCGTTTAACTTTCTGTCTTTGGCTATTTTTTTTCGC
TGGGCCGTGATTATGTTGGGGCGTTTGTTTCCCTACGTTATGAAGGCGCA
GCTAACCGAGTGTCGTAACTGGTCGCTAGCGTTGAAGACAATGTTAGTCT
TGCACGCAATATCTGTCAACATCCTCTCCAA
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protein sequence of EsuBft885_8a-0001

>EsuBft885_8 ID=EsuBft885_8|Name=EsuBft885_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=125bp
MAKNKESVTEIMRTVPHAKALEIQAELDKWVRFQLAEATGENKSGNSAQV
KAKGRPKKSKSEGSKQDRHDDNGAPADSGSVQPVGNPEGRRDKSRREKRI
KEVWCWVWSNDPSAYQRENVVAYNT
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mRNA from alignment at Scaffold_84:56009..56789+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft885_8a-0001 ID=EsuBft885_8a-0001|Name=EsuBft885_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=781bp|location=Sequence derived from alignment at Scaffold_84:56009..56789+ (Ectocarpus subulatus male Bft15b)
CCGCGTGTTCGCGACTCTGATGGCCAAGAACAAGGAAAGCGTCACCGAAA
TAATGAGGACGGTTCCACACGCCAAAGCCTTGGAGATACAGGCTGAACTG
GACAAGTGGGTGAGGTTCCAGCTTGCCGAAGCTACCGGCGAGAACAAGAG
CGGTAATTCAGCGCAGGTAAAAGCGAAAGGGAGGCCTAAGAAATCCAAGT
CGGAGGGATCAAAGCAGGACCGACACGATGACAACGGTGCGCCTGCCGAC
AGCGGGTCTGTTCAACCAGTCGGTAACCCGGAAGGGCGGAGGGACAAGAG
TCGGAGGGAAAAGAGGATCAAAGAGGTCTGGTGCTGGGTCTGGAGCAACG
ACCCGTCGGCCTACCAAAGAGAAAACGTCGTAGCTTACAACACGTAGTCC
CTAGTAACAAATCAACGGCCGCGACACGTAGATAGTTCGAATCGTGTGCC
GCCCTTGCCATCTCGTTCCCGGCGTTGCCAGTCCATATCATCTCGTGCGT
GCTAACGCTGCACAGATACTAGCGGGCAATGCAGGCTGAGCCTGATGTTT
GGAATTGCACACGACAAAGTACGCGCTATGCGTGCTATCTGGCCTTATCT
GTCTGCGCGTTTTTCCGTTTAACTTTCTGTCTTTGGCTATTTTTTTTCGC
TGGGCCGTGATTATGTTGGGGCGTTTGTTTCCCTACGTTATGAAGGCGCA
GCTAACCGAGTGTCGTAACTGGTCGCTAGCGTTGAAGACAATGTTAGTCT
TGCACGCAATATCTGTCAACATCCTCTCCAA
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Coding sequence (CDS) from alignment at Scaffold_84:56009..56789+

>EsuBft885_8a-0001 ID=EsuBft885_8a-0001|Name=EsuBft885_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=378bp|location=Sequence derived from alignment at Scaffold_84:56009..56789+ (Ectocarpus subulatus male Bft15b)
ATGGCCAAGAACAAGGAAAGCGTCACCGAAATAATGAGGACGGTTCCACA
CGCCAAAGCCTTGGAGATACAGGCTGAACTGGACAAGTGGGTGAGGTTCC
AGCTTGCCGAAGCTACCGGCGAGAACAAGAGCGGTAATTCAGCGCAGGTA
AAAGCGAAAGGGAGGCCTAAGAAATCCAAGTCGGAGGGATCAAAGCAGGA
CCGACACGATGACAACGGTGCGCCTGCCGACAGCGGGTCTGTTCAACCAG
TCGGTAACCCGGAAGGGCGGAGGGACAAGAGTCGGAGGGAAAAGAGGATC
AAAGAGGTCTGGTGCTGGGTCTGGAGCAACGACCCGTCGGCCTACCAAAG
AGAAAACGTCGTAGCTTACAACACGTAG
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