EsuBft885_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft885_7a-0001
Unique NameEsuBft885_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_84contigScaffold_84:63068..64034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft885_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length65
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft885_7aEsuBft885_7aEctocarpus subulatus male Bft15bgeneScaffold_84 63068..64034 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_7a-0001-exonagat-exon-109728Ectocarpus subulatus male Bft15bexonScaffold_84 63068..63551 -
EsuBft885_7a-0001-exonEsuBft885_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_84 63862..64034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_7a-0001-cdsEsuBft885_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_84 63068..63551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_7a-0001EsuBft885_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_84 63068..64034 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft885_7a-0001 ID=EsuBft885_7a-0001|Name=EsuBft885_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=657bp|location=Sequence derived from alignment at Scaffold_84:63068..64034- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCATTTATTGGAACAAGGTAGTTGCGAAACGCGCAACCTACCAGCA
GCCAGGCAACGGCGTGGACCGCTGGATACACGGGAATGCCCAATGCCGTG
CCTGCACGGGGCTCCAGCAACAGCAAGTGAACTATGGTTGCCTAGATCAA
GACGTCCGCGACGATGCTTGCAGGTGTGACGACGACCATGCAGAGTTTTT
GTTCCAGAATGGCGCTGTCGTACATTACTACTTCGCGAGTACTGATCCAA
ACAAGAGCATCAAGGACGCATTGCTTCCACATGGAAATGTGTCCCTGTCT
TACTACGATGCGGTTGTTGCCAACAACGGCAATGGGCCGGAAATGGCTGT
AGACGTTGTTTGTGAAGCAGCATTGGAGCTACAAGCTCTTTCGGTGCCGT
TCCTCTGGCTAAGTACGTATGTTGGGCGGGGTAGTGTCGATTTGTGGAAT
GATGCGCAGCAGGAACAGTTTACTCAGTCCGGCGCCCGATTTGTAAATGT
GGGCCATATGATGTTTGGGCTGTCGAATTTCACGAAGGGAGCGGTTGAAG
GTGGTAATGATCCTCACTTTTGCCTGCCAGGCCCTCCGGATGAGTTAGGT
TTGCTCTTGTTGAAGATAATTTGGGCAATTCATCAAGAGCGAGGGGCAGC
AGCGTAA
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protein sequence of EsuBft885_7a-0001

>EsuBft885_7 ID=EsuBft885_7|Name=EsuBft885_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=218bp
MCIYWNKVVAKRATYQQPGNGVDRWIHGNAQCRACTGLQQQQVNYGCLDQ
DVRDDACRCDDDHAEFLFQNGAVVHYYFASTDPNKSIKDALLPHGNVSLS
YYDAVVANNGNGPEMAVDVVCEAALELQALSVPFLWLSTYVGRGSVDLWN
DAQQEQFTQSGARFVNVGHMMFGLSNFTKGAVEGGNDPHFCLPGPPDELG
LLLLKIIWAIHQERGAAA
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mRNA from alignment at Scaffold_84:63068..64034-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft885_7a-0001 ID=EsuBft885_7a-0001|Name=EsuBft885_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=967bp|location=Sequence derived from alignment at Scaffold_84:63068..64034- (Ectocarpus subulatus male Bft15b)
ATGTGCATTTATTGGAACAAGGTAGTTGCGAAACGCGCAACCTACCAGCA
GCCAGGCAACGGCGTGGACCGCTGGATACACGGGAATGCCCAATGCCGTG
CCTGCACGGGGCTCCAGCAACAGCAAGTGAACTATGGTTGCCTAGATCAA
GACGTCCGCGACGATGCTTGCAGGTATGTCGTATCTCCAATTTGTCGGTG
GTCAAGTGGGGCCCACAGAGTGTACTCGTTTGTTTCCGGGTTCGCACACC
GTAACGCACAAACCACGTGGATTTCTCCGGTTAGTTTCTCAAGGATGCGA
CTCACCCGACAAATTAACAAAAATTGTAGTCCTACCGAATACGAAATAAT
CCAGACAAGACAGCGTCTGATGCCATCAAATGTTCCGTTGTACAGTAGTC
CACTGTGAGGGCACATCGTCCCAGACTTCCATGAGGCGATCACTATTCCC
TTTAATCCAAGTTGCTTGCTATCTTGTCTTCAGGTGTGACGACGACCATG
CAGAGTTTTTGTTCCAGAATGGCGCTGTCGTACATTACTACTTCGCGAGT
ACTGATCCAAACAAGAGCATCAAGGACGCATTGCTTCCACATGGAAATGT
GTCCCTGTCTTACTACGATGCGGTTGTTGCCAACAACGGCAATGGGCCGG
AAATGGCTGTAGACGTTGTTTGTGAAGCAGCATTGGAGCTACAAGCTCTT
TCGGTGCCGTTCCTCTGGCTAAGTACGTATGTTGGGCGGGGTAGTGTCGA
TTTGTGGAATGATGCGCAGCAGGAACAGTTTACTCAGTCCGGCGCCCGAT
TTGTAAATGTGGGCCATATGATGTTTGGGCTGTCGAATTTCACGAAGGGA
GCGGTTGAAGGTGGTAATGATCCTCACTTTTGCCTGCCAGGCCCTCCGGA
TGAGTTAGGTTTGCTCTTGTTGAAGATAATTTGGGCAATTCATCAAGAGC
GAGGGGCAGCAGCGTAA
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Coding sequence (CDS) from alignment at Scaffold_84:63068..64034-

>EsuBft885_7a-0001 ID=EsuBft885_7a-0001|Name=EsuBft885_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=657bp|location=Sequence derived from alignment at Scaffold_84:63068..64034- (Ectocarpus subulatus male Bft15b)
ATGTGCATTTATTGGAACAAGGTAGTTGCGAAACGCGCAACCTACCAGCA
GCCAGGCAACGGCGTGGACCGCTGGATACACGGGAATGCCCAATGCCGTG
CCTGCACGGGGCTCCAGCAACAGCAAGTGAACTATGGTTGCCTAGATCAA
GACGTCCGCGACGATGCTTGCAGGTGTGACGACGACCATGCAGAGTTTTT
GTTCCAGAATGGCGCTGTCGTACATTACTACTTCGCGAGTACTGATCCAA
ACAAGAGCATCAAGGACGCATTGCTTCCACATGGAAATGTGTCCCTGTCT
TACTACGATGCGGTTGTTGCCAACAACGGCAATGGGCCGGAAATGGCTGT
AGACGTTGTTTGTGAAGCAGCATTGGAGCTACAAGCTCTTTCGGTGCCGT
TCCTCTGGCTAAGTACGTATGTTGGGCGGGGTAGTGTCGATTTGTGGAAT
GATGCGCAGCAGGAACAGTTTACTCAGTCCGGCGCCCGATTTGTAAATGT
GGGCCATATGATGTTTGGGCTGTCGAATTTCACGAAGGGAGCGGTTGAAG
GTGGTAATGATCCTCACTTTTGCCTGCCAGGCCCTCCGGATGAGTTAGGT
TTGCTCTTGTTGAAGATAATTTGGGCAATTCATCAAGAGCGAGGGGCAGC
AGCGTAA
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