EsuBft885_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft885_6a-0001
Unique NameEsuBft885_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_84contigScaffold_84:79538..82366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft885_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length188
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft885_6aEsuBft885_6aEctocarpus subulatus male Bft15bgeneScaffold_84 79538..82366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_6a-0001EsuBft885_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_84 79538..79740 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_6a-0001-exonEsuBft885_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_84 79538..79600 +
EsuBft885_6a-0001-exonagat-exon-109727Ectocarpus subulatus male Bft15bexonScaffold_84 79687..81066 +
EsuBft885_6a-0001-exonagat-exon-109725Ectocarpus subulatus male Bft15bexonScaffold_84 81436..81717 +
EsuBft885_6a-0001-exonagat-exon-109726Ectocarpus subulatus male Bft15bexonScaffold_84 82205..82366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_6a-0001-cdsEsuBft885_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_84 79538..79600 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_6a-0001-exonagat-three_prime_utr-22687Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_84 79741..81066 +
EsuBft885_6a-0001-exonagat-three_prime_utr-22688Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_84 81436..81717 +
EsuBft885_6a-0001-exonagat-three_prime_utr-22689Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_84 82205..82366 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft885_6a-0001 ID=EsuBft885_6a-0001|Name=EsuBft885_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1887bp|location=Sequence derived from alignment at Scaffold_84:79538..82366+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACATGCCGTGGTGGCCAGTTACCGCCCACAAAATACTGTGTTGTA
CCGTGGTTTCTGGGCGTTGAGTACGGAAACGGAAAAGGAAGCAAAAGGTC
GATACTTGTGCAAGTAACAGCGAATTGGAGAAACGTTCTTCACCGCGGTC
GTGGCATACCCATCACGATCAATTCTGTTGTGGGTAGTCAAATTAACCCT
TTTGGGTCTACAGGCCTTCTGACAGATCATTGATTGGTCATTTTTTCCAT
ATTTTTTTTCCTAATAGCGCCGAACAGATGGTCTAGTCGTATGGAGGAGG
ATACGACAGAAACCCCGAACCACATGCAATGGAGTTGTAGAGCACACCAG
GATAGAGCGCGCCCGCCCCACCAACACATAGCTGCAAACACATGAAGCAT
CCACCAGAGGTGCGCCGATAGGTCATGAGGAGGCCTCCACGCCCCGCGTG
GTCTGCCCTGCCTATCTGGGTGGCGTTGTTGGTAGCGCTTGCGGTAGCGC
TGCTGGCAGCGCCAGTTGCCATTCCTGCTCGTACATCGGCTTTGGCCGTC
TCTCTCCGGCAGCCACCCACACTTGCTGTGAACGCGGCCACTGAGGACAG
CGAGCTTGGCATGGAGGCCAGCGGATATGCAATCGACCCAAGCATTCCGA
CTGATGATGAGGATGACTATGAGTTTGATATGGGCGCATCGTACAAACCG
ATATATGCTGCGAACTCGCACAAAGCTGGTCACAATACCCGGGGAGCAGC
TCGGCAGCTACGGCAACAACAACAGGCGCCGGCATCACCGGTCACGCCGT
CGCTCCGGACGACTTTGCTCGGGCCGCAACAGCGGCAGCGGCAACAGCAG
CAGCAGCAGCAGCAACAACCATCTCCGCGGGAGCGCTTGGGTCTAGGAAG
TGTACCGAACTCGCATGACGCTGGTCACAACACCCGCGATGTAGGCGGGC
AACAGCGGCAACAACAGGGGACCCCGGAGCTACCGGTCACGGACCGGCTC
CCTACGACCTCGCGTGAGGCGCAACAGCCGCAACACCAGCAGCACCAGCA
CCAGCAACCATCCCCACCGGATTCTTCTCCGGCGAACCCGGCTGTATGTG
TCGCTTTCATTCGCCGCAGCGCACGACGTGGCGAAATGTGCGGCAACAAG
GTTGGAGGTAGGACGGCAGGATTTTGCAAGCATCATGACGGCCTACAGAA
GCGCCGAAAGACGGCGTCAGGTGCAGCTCTTGGAGTGGGGGGCAGCGTCG
AGGCAGGCAACTATGACTCGCAGTCGGAGTTGGGTGGTGGTATGGACGAA
TCGCATACTCCTGGCGCACGTCCTTTCATTTCGAATCCAAGGAACTGCAC
TACGCGCAGGCCTCCAAGATCGAGGATGAGGGTTTCCGGAGAGCGCAGGA
GAGTGTGTGGCACCTCAAGCGGATCAAGCCCCCAAAACCAAAGGCTGTTG
AACCACCCCCCCCTCCAATCCCGGACGATCCGAAAGGGTGGGTGCTCGAG
GGACTACCCCGTGACGAGTCATCCGATCCGTACAAGAGGCGGCACAAACA
CCCCGGCGGCGACAAATTCAGCGTATCGGACCAGCTGAAGGCGAGTCTAC
CGAAGGTCGACAAACAAGGGCTAGCTGTTTTGCGTTCTTTCGTCAACGGG
AAGGGTGGGGGTCACCCCTTCATGTTCTTTGAGAAGACTTTCCCGACGGA
GGAGCAGGACGTCGTCCTGAGGGAGACGAACGGGTACGTCAACTTCTGCG
CCGATGAGTCTGACCCGCCCCTGGAACACCAGGAACCTCGACATCGGGCG
AAGAAGGTGACGCGGGGATTTCAGAGGGTGCAAGGACCTGGCGGATGGAT
CTCGAGCGTACGCCTTCGAGCGCAGGCACCTGTACGG
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protein sequence of EsuBft885_6a-0001

>EsuBft885_6 ID=EsuBft885_6|Name=EsuBft885_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=38bp
MEHAVVASYRPQNTVLYRGFWALSTETEKEAKGRYLCK
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mRNA from alignment at Scaffold_84:79538..82366+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft885_6a-0001 ID=EsuBft885_6a-0001|Name=EsuBft885_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2829bp|location=Sequence derived from alignment at Scaffold_84:79538..82366+ (Ectocarpus subulatus male Bft15b)
ATGGAACATGCCGTGGTGGCCAGTTACCGCCCACAAAATACTGTGTTGTA
CCGTGGTTTCTGGGTAATGCGGGAAATGATTCCGACATGAACCGCTAACG
AGGACAGCCCTGGAAGCACCCTGCTATAGTTTTCCAAAATGAGAAGCAGG
CGTTGAGTACGGAAACGGAAAAGGAAGCAAAAGGTCGATACTTGTGCAAG
TAACAGCGAATTGGAGAAACGTTCTTCACCGCGGTCGTGGCATACCCATC
ACGATCAATTCTGTTGTGGGTAGTCAAATTAACCCTTTTGGGTCTACAGG
CCTTCTGACAGATCATTGATTGGTCATTTTTTCCATATTTTTTTTCCTAA
TAGCGCCGAACAGATGGTCTAGTCGTATGGAGGAGGATACGACAGAAACC
CCGAACCACATGCAATGGAGTTGTAGAGCACACCAGGATAGAGCGCGCCC
GCCCCACCAACACATAGCTGCAAACACATGAAGCATCCACCAGAGGTGCG
CCGATAGGTCATGAGGAGGCCTCCACGCCCCGCGTGGTCTGCCCTGCCTA
TCTGGGTGGCGTTGTTGGTAGCGCTTGCGGTAGCGCTGCTGGCAGCGCCA
GTTGCCATTCCTGCTCGTACATCGGCTTTGGCCGTCTCTCTCCGGCAGCC
ACCCACACTTGCTGTGAACGCGGCCACTGAGGACAGCGAGCTTGGCATGG
AGGCCAGCGGATATGCAATCGACCCAAGCATTCCGACTGATGATGAGGAT
GACTATGAGTTTGATATGGGCGCATCGTACAAACCGATATATGCTGCGAA
CTCGCACAAAGCTGGTCACAATACCCGGGGAGCAGCTCGGCAGCTACGGC
AACAACAACAGGCGCCGGCATCACCGGTCACGCCGTCGCTCCGGACGACT
TTGCTCGGGCCGCAACAGCGGCAGCGGCAACAGCAGCAGCAGCAGCAGCA
ACAACCATCTCCGCGGGAGCGCTTGGGTCTAGGAAGTGTACCGAACTCGC
ATGACGCTGGTCACAACACCCGCGATGTAGGCGGGCAACAGCGGCAACAA
CAGGGGACCCCGGAGCTACCGGTCACGGACCGGCTCCCTACGACCTCGCG
TGAGGCGCAACAGCCGCAACACCAGCAGCACCAGCACCAGCAACCATCCC
CACCGGATTCTTCTCCGGCGAACCCGGCTGTATGTGTCGCTTTCATTCGC
CGCAGCGCACGACGTGGCGAAATGTGCGGCAACAAGGTTGGAGGTAGGAC
GGCAGGATTTTGCAAGCATCATGACGGCCTACAGAAGCGCCGAAAGACGG
CGTCAGGTGCAGCTCTTGGAGTGGGGGGCAGCGTCGAGGCAGGCAACTAT
GACTCGCAGTCGGAGTTGGGTGGTGGTATGGACGAATCGCATACTCCTGG
CGCACGTCCTTTCATTTCGAATCCAAGGAACTGCACTACGCGCAGGCCTC
CAAGATCGAGGATGAGGGTTTCCGGAGAGCGCAGGAGAGTGTGTGGCACC
TCAAGCGGATCAAGCCCCCAAAACCAAAGGTGCGCAACATATGTAGTGCT
TAGCCTATCTTTTAGCGCTGGCGTGCCTTCCCTTTCAACGTATGCCTACG
TAATAAACCACCATGAACTACACACCGGTGCGCTTTCATTTCCTTCGATA
ACCTACACCAGTGTACACATGTTATTTTTGTATTCTTCCTGTTTGAGCAG
CATCGACCGCACTACTGCTGTAGACGCATGACTAATGCCAAATGCGTGTG
TCCCTCATTGCCGTAGGCGATGCTGCGATAAGTTTGTACCATTTTGCCCT
GTGTTGTTAGGTACTATTGTGTGAGCCTATTTCAATTTCAAGTGTATTAT
TGGGTTGCCCCCTAATTATACCTGGTGTTTGTTGTTGGTCTTTCCCAGGC
TGTTGAACCACCCCCCCCTCCAATCCCGGACGATCCGAAAGGGTGGGTGC
TCGAGGGACTACCCCGTGACGAGTCATCCGATCCGTACAAGAGGCGGCAC
AAACACCCCGGCGGCGACAAATTCAGCGTATCGGACCAGCTGAAGGCGAG
TCTACCGAAGGTCGACAAACAAGGGCTAGCTGTTTTGCGTTCTTTCGTCA
ACGGGAAGGGTGGGGGTCACCCCTTCATGTTCTTTGAGAAGACTTTCCCG
ACGGAGGAGCAGGACGTCGTCCTGAGGGAGGTGAGGAAAACGNGGTCATG
TGTTTATCGTTACATGTTCAGACGTGCAGGCGTGCTTGGACGGCCGGGGG
GTAGGGGGGGGCATTAGTGCAACGCGATGGAGCTAGGATCCAGCATGTAT
CAGAGTCGACAAATGAACACATGCATCAGGCGACAGGAGGGCAGCGACAT
AGCGTGAAAGTAGTTCCAGGGTCGTGCTTGACGCCAAAACCAACTACCAC
CATCAACGATATTCTGAATAACACCTTGTGTACTACACAGAACTCGTACG
AGCCATGTATGCCTTCATGGCCAACTGAAACCAGGGGCTGTGTATTCCAA
GCAACTTCGACGGTGCGCACCACCAACTATCTTGAAGATTTTTCGGCACC
CTTGCGCCAGGCGAGCTCACTCGTTTGTTGTGCCAAGTTGTTTTTTAGAA
ATCTCTCTCGTGTCCCGCCCCTTCACGCCTTTATTTTATATCCCGCCCCT
TCCCGCCCTCTTATCAGACGAACGGGTACGTCAACTTCTGCGCCGATGAG
TCTGACCCGCCCCTGGAACACCAGGAACCTCGACATCGGGCGAAGAAGGT
GACGCGGGGATTTCAGAGGGTGCAAGGACCTGGCGGATGGATCTCGAGCG
TACGCCTTCGAGCGCAGGCACCTGTACGG
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Coding sequence (CDS) from alignment at Scaffold_84:79538..82366+

>EsuBft885_6a-0001 ID=EsuBft885_6a-0001|Name=EsuBft885_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=117bp|location=Sequence derived from alignment at Scaffold_84:79538..82366+ (Ectocarpus subulatus male Bft15b)
ATGGAACATGCCGTGGTGGCCAGTTACCGCCCACAAAATACTGTGTTGTA
CCGTGGTTTCTGGGCGTTGAGTACGGAAACGGAAAAGGAAGCAAAAGGTC
GATACTTGTGCAAGTAA
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