EsuBft885_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft885_2a-0001
Unique NameEsuBft885_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_84contigScaffold_84:113582..114822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LN28
ProteomeIdEsuBft885_2
Protein domainsIPR004875
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length114
Hectar predicted targeting categoryother localisation
Evalue4.71e-27
EggNOG OGs2CZS4@1|root,2SBGG@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionDDE superfamily endonuclease
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft885_2aEsuBft885_2aEctocarpus subulatus male Bft15bgeneScaffold_84 113582..114822 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_2a-0001-exonEsuBft885_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_84 113582..114045 +
EsuBft885_2a-0001-exonagat-exon-109716Ectocarpus subulatus male Bft15bexonScaffold_84 114141..114822 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_2a-0001-exonagat-five_prime_utr-14683Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_84 113582..113908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_2a-0001-cdsEsuBft885_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_84 113909..114045 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_2a-0001-exonagat-three_prime_utr-22682Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_84 114367..114822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_2a-0001EsuBft885_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_84 113909..114366 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft885_2a-0001 ID=EsuBft885_2a-0001|Name=EsuBft885_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1146bp|location=Sequence derived from alignment at Scaffold_84:113582..114822+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCAGAAGGTGGTTGGTTCGACGCGCTCCAACTCGCGAGAGAATACCACC
GTGTCGCTACCATCAGCGCTGATGCTCACACCTGGGCACCAACCATTATC
TGCAAAGGGCAACGACTTCAGGCCGATTGGTTTGTAGGGCGAAACGGCCC
GGAGGGTGCGAGGTACACCTGTACGGATTCTCCGTTCATGCAGGGAGACG
TATTCATCGCCTACTTGAAGGATTTCCACAAGCAGCTCGGCGACCGAGGG
TTGCTCGACGGAAACCCCACATACTCTTGCTCGATGGATATGCATCACAC
GTGAGCGTGGAGGTAATCAGGCTGGCCATGAATCTCAAAATCATCTTGTT
CCAGCTACCCTCCCACACGTCGCACATCACCCAGCCCTTGGATGTCGTCG
CCTTCGGACGCTTGAAGAAATCGGTGACCAGAGTTTTGGCGTCCTTCTAC
CCCAACTCCGGCGGGCTGGCCATGAATCTCAAAATCATCTTGTTCCAGCT
ACCCTCCCACACGTCGCACATCACCCAGCCCTTGGATGTCGTCGCCTTCG
GACGCTTGAAGAAATCGGTGACCAGAGTTTTGGCGTCCTTCTACCCCAAC
TCCGGCGGGTTGTTGCCGCTGAAACGCGACATGCCCGGCGTGATCGCGGA
TGCTTGGAAATTGAGCTTCACACCGGAGGTAAATAAATGATCATTCGCTG
GGGCGGGCTTGTGGCCTGTGAACAAGGAGCGGGCGCTGGGCCGGCTGAAG
GGCACAGCGAAGAAGAAAGAGCGGCGAGACGAGCGCCCACCCCTACAGGA
TGTCCCCATCGCCGCCCTCAACGAGCAGCTGGAAAAAGACATCGGAGAAA
GGGCCCTCAGGGTGCTGAGGGGGCAAGGGCACACCGTCACGGGAATCCGA
GTAGGCACGGTATTACTCGGTAGCCTCTTGACTCAAGGAAGCGCGCGAAG
AAGATGGCGACCTCGCGGGGCTCGCTTGGCCTTCCCGACGGAGGCAACAT
TACCGCGCCTGAGTTCCTGGATGCTGTTGCCGAAAAAGAACGCGCAGACA
AGGCGGAGATCGACGCGAAGGCTTCGAGGGCGAAAGTCCGCGAAGCGAAG
AGGGCAGAAAAAGCGGTCGCGGAGCTATTGCGGCAGGCGCGCATGG
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protein sequence of EsuBft885_2a-0001

>EsuBft885_2 ID=EsuBft885_2|Name=EsuBft885_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=120bp
MNLKIILFQLPSHTSHITQPLDVVAFGRLKKSVTRVLASFYPNSGGLAMN
LKIILFQLPSHTSHITQPLDVVAFGRLKKSVTRVLASFYPNSGGLLPLKR
DMPGVIADAWKLSFTPEVNK
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mRNA from alignment at Scaffold_84:113582..114822+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft885_2a-0001 ID=EsuBft885_2a-0001|Name=EsuBft885_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1241bp|location=Sequence derived from alignment at Scaffold_84:113582..114822+ (Ectocarpus subulatus male Bft15b)
GTCAGAAGGTGGTTGGTTCGACGCGCTCCAACTCGCGAGAGAATACCACC
GTGTCGCTACCATCAGCGCTGATGCTCACACCTGGGCACCAACCATTATC
TGCAAAGGGCAACGACTTCAGGCCGATTGGTTTGTAGGGCGAAACGGCCC
GGAGGGTGCGAGGTACACCTGTACGGATTCTCCGTTCATGCAGGGAGACG
TATTCATCGCCTACTTGAAGGATTTCCACAAGCAGCTCGGCGACCGAGGG
TTGCTCGACGGAAACCCCACATACTCTTGCTCGATGGATATGCATCACAC
GTGAGCGTGGAGGTAATCAGGCTGGCCATGAATCTCAAAATCATCTTGTT
CCAGCTACCCTCCCACACGTCGCACATCACCCAGCCCTTGGATGTCGTCG
CCTTCGGACGCTTGAAGAAATCGGTGACCAGAGTTTTGGCGTCCTTCTAC
CCCAACTCCGGCGGGTTGTTGCCGCTGAAACGCGACATGCCCGGCGTGAT
CNACCCCACATACTCTTGCTCGATGGATATGCATCACACGTGAGCGTGGA
GGTAATCAGGCTGGCCATGAATCTCAAAATCATCTTGTTCCAGCTACCCT
CCCACACGTCGCACATCACCCAGCCCTTGGATGTCGTCGCCTTCGGACGC
TTGAAGAAATCGGTGACCAGAGTTTTGGCGTCCTTCTACCCCAACTCCGG
CGGGTTGTTGCCGCTGAAACGCGACATGCCCGGCGTGATCGCGGATGCTT
GGAAATTGAGCTTCACACCGGAGGTAAATAAATGATCATTCGCTGGGGCG
GGCTTGTGGCCTGTGAACAAGGAGCGGGCGCTGGGCCGGCTGAAGGGCAC
AGCGAAGAAGAAAGAGCGGCGAGACGAGCGCCCACCCCTACAGGATGTCC
CCATCGCCGCCCTCAACGAGCAGCTGGAAAAAGACATCGGAGAAAGGGCC
CTCAGGGTGCTGAGGGGGCAAGGGCACACCGTCACGGGAATCCGAGTAGG
CACGGTATTACTCGGTAGCCTCTTGACTCAAGGAAGCGCGCGAAGAAGAT
GGCGACCTCGCGGGGCTCGCTTGGCCTTCCCGACGGAGGCAACATTACCG
CGCCTGAGTTCCTGGATGCTGTTGCCGAAAAAGAACGCGCAGACAAGGCG
GAGATCGACGCGAAGGCTTCGAGGGCGAAAGTCCGCGAAGCGAAGAGGGC
AGAAAAAGCGGTCGCGGAGCTATTGCGGCAGGCGCGCATGG
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Coding sequence (CDS) from alignment at Scaffold_84:113582..114822+

>EsuBft885_2a-0001 ID=EsuBft885_2a-0001|Name=EsuBft885_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=363bp|location=Sequence derived from alignment at Scaffold_84:113582..114822+ (Ectocarpus subulatus male Bft15b)
ATGAATCTCAAAATCATCTTGTTCCAGCTACCCTCCCACACGTCGCACAT
CACCCAGCCCTTGGATGTCGTCGCCTTCGGACGCTTGAAGAAATCGGTGA
CCAGAGTTTTGGCGTCCTTCTACCCCAACTCCGGCGGGCTGGCCATGAAT
CTCAAAATCATCTTGTTCCAGCTACCCTCCCACACGTCGCACATCACCCA
GCCCTTGGATGTCGTCGCCTTCGGACGCTTGAAGAAATCGGTGACCAGAG
TTTTGGCGTCCTTCTACCCCAACTCCGGCGGGTTGTTGCCGCTGAAACGC
GACATGCCCGGCGTGATCGCGGATGCTTGGAAATTGAGCTTCACACCGGA
GGTAAATAAATGA
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