EsuBft885_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft885_11a-0001
Unique NameEsuBft885_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_84contigScaffold_84:22829..23144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft885_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length27
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft885_11aEsuBft885_11aEctocarpus subulatus male Bft15bgeneScaffold_84 22829..23144 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_11a-0001-exonEsuBft885_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_84 22829..23079 -
EsuBft885_11a-0001-exonagat-exon-109749Ectocarpus subulatus male Bft15bexonScaffold_84 23122..23144 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_11a-0001-exonagat-three_prime_utr-22681Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_84 22829..23036 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_11a-0001-cdsEsuBft885_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_84 23037..23079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft885_11a-0001EsuBft885_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_84 23037..23144 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft885_11a-0001 ID=EsuBft885_11a-0001|Name=EsuBft885_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=274bp|location=Sequence derived from alignment at Scaffold_84:22829..23144- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCGGGAGTGTATATTGAGGCATCCATTCGGGCTTATAAGTCCCGA
CTCACTGCTGTCGTAGCCTTCATGTTGTCTGCCTCCGAGTGATCGCACTA
CACCAGTTTAGTTTCAACGCCACTTCTTGAGTGCAGTGCATATGTCCCTA
CGTCCCCTCAATGTGGTTCATCTGTTCATTCGTACCAATGCATCATGCAA
GCGAACGGGACAGTACAGTACAGTAAAGTACAGCACACCCTTCTTCAGTG
TTGTATCATTCGGTAGTATTTTAG
back to top

protein sequence of EsuBft885_11a-0001

>EsuBft885_11 ID=EsuBft885_11|Name=EsuBft885_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=21bp
MHRECILRHPFGLISPDSLLS
back to top

mRNA from alignment at Scaffold_84:22829..23144-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft885_11a-0001 ID=EsuBft885_11a-0001|Name=EsuBft885_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=316bp|location=Sequence derived from alignment at Scaffold_84:22829..23144- (Ectocarpus subulatus male Bft15b)
ATGCACCGGGAGTGTATATTGAGGTGAATTGCTGGTACGCCTCCCGGGCA
CTAAACATTGGTCAGGCATCCATTCGGGCTTATAAGTCCCGACTCACTGC
TGTCGTAGCCTTCATGTTGTCTGCCTCCGAGTGATCGCACTACACCAGTT
TAGTTTCAACGCCACTTCTTGAGTGCAGTGCATATGTCCCTACGTCCCCT
CAATGTGGTTCATCTGTTCATTCGTACCAATGCATCATGCAAGCGAACGG
GACAGTACAGTACAGTAAAGTACAGCACACCCTTCTTCAGTGTTGTATCA
TTCGGTAGTATTTTAG
back to top

Coding sequence (CDS) from alignment at Scaffold_84:22829..23144-

>EsuBft885_11a-0001 ID=EsuBft885_11a-0001|Name=EsuBft885_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=66bp|location=Sequence derived from alignment at Scaffold_84:22829..23144- (Ectocarpus subulatus male Bft15b)
ATGCACCGGGAGTGTATATTGAGGCATCCATTCGGGCTTATAAGTCCCGA
CTCACTGCTGTCGTAG
back to top