EsuBft884_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft884_9a-0001
Unique NameEsuBft884_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_302contigScaffold_302:362310..365514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog1123322.KB904636_gene2817
ProteomeIdEsuBft884_9
Protein domainsIPR016181
Protein domainsIPR000182
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl201174|Actinobacteria
Length120
Hectar predicted targeting categoryother localisation
Evalue0.000178
EggNOG OGsCOG0454@1|root,COG0456@2|Bacteria,2GJJZ@201174|Actinobacteria
Ec32 ortholog descriptionAcetyltransferase (GNAT) domain protein
Ec32 orthologEc-22_002740.1
Date last modified2016-06-15
Date creation2016-06-15
DescriptionAcetyltransferase (GNAT) domain
COG categoryK
Cross References
External references for this mRNA
DatabaseAccession
GO0008080
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft884_9aEsuBft884_9aEctocarpus subulatus male Bft15bgeneScaffold_302 362310..365514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft884_9a-0001EsuBft884_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_302 362310..365374 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft884_9a-0001-exonagat-exon-31816Ectocarpus subulatus male Bft15bexonScaffold_302 362310..362468 +
EsuBft884_9a-0001-exonagat-exon-31815Ectocarpus subulatus male Bft15bexonScaffold_302 363083..363189 +
EsuBft884_9a-0001-exonEsuBft884_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_302 363968..364121 +
EsuBft884_9a-0001-exonagat-exon-31817Ectocarpus subulatus male Bft15bexonScaffold_302 364383..364643 +
EsuBft884_9a-0001-exonagat-exon-31814Ectocarpus subulatus male Bft15bexonScaffold_302 364994..365514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft884_9a-0001-cdsEsuBft884_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_302 362310..362468 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft884_9a-0001-exonagat-three_prime_utr-22680Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_302 365375..365514 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft884_9a-0001 ID=EsuBft884_9a-0001|Name=EsuBft884_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1202bp|location=Sequence derived from alignment at Scaffold_302:362310..365514+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGTATCCTTATGCGTTTCTCGCCATGCGGCGCAGGTGGATGCTTG
CTTGCACGGCGCCTGCGTCGAGAAGCGATGGTTGGTGCTTGAAACGCCTC
ATCCCGAGGAGACGATGGTAGCAGCTTGCCTGATCTGCACTGGAACCACT
CCCGGGAAGGGCAGCGTCGAGCTGTTGGCGGTGAAGCCTGCACTACAAGG
CAGGGGGCTGGGGTCACATTTGCTACGGCGGGCGGAGGGCATTCTACTCA
ACTTCCGCTGCAGGTGGTTCGTCAGGATGAGGGTGCCACAATGGAGGGAG
GACGTGCTCGGGTGGGCCGGTAAGCGGGGCTACAAGGAAACGGGAGGGGG
TTTGTGGGGCGAGCTGGACAGGGAGAGCGCGGAGGACCTCACGAGACCGA
CGCGGTATTTCATGCTGACGCACGACCTCCTTACGGACAAGAAGGTTGCG
GGTACCTTCGGCGATGGGACGGCTCGATACACCGCCGCCGCAGCTGCAGC
AGCCGAGAGAGTCGCCTTGGGCGGTGCCCGTAGGCCTACCTCGAATTCGA
CATCAAGTGAGGCTTCGAAAGGACTGGACGGAAGCACTCGTAAAGCGAAG
GATGAAGAGGATAGTGGGCGTCTTGCGGGCTTCCTGTCGAGCGTTTTGAA
GGGTCTGGCCGATGCGGAGGTGGAAGATCAGGAGGGAATCGACGCCAAGG
GATTTGCTACAGCACCCATGGCGGACATGGCCGTTGGAGTGGCAGCAGCA
ACACCGAGTTGCCCGTTTCTGCCGCCAGCACCCAGCGATGAGACTGGAGC
TTCGGATGGGGCTACGTGCCAACCCTGTGTTGGTACCACCGCCAACAATT
CTATCGCTGCCGCGGGCGAGCATGGCTCCGTGCCTGCTTTGAGGGATGAC
TTTGAGGTAGTTGAATTGCCAAGTGTTGGAGGGGGGGATGGTGAGGCTGT
GGACCGTGAGGAGAGCGTTGAGGACCTGCTCAGCTCTCTCATGCGCACTC
TCAACACGGAACAAGGCAGGGCTGATTTTAGGAGGCTAGCTGCCATAGGA
TCGACTTCCTGACGACGGAGATGGATTCTGCGAACTTCAACATCTCACAT
AGGCGTTTTTTGTATCTGTTCTGGCCAGTTTCACTGAACCTTTTTGCTGT
GAGGACTTATACGCATTCCTTGAGCCCGTGGCACGGTGGTACATGTGGTG
CC
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protein sequence of EsuBft884_9a-0001

>EsuBft884_9 ID=EsuBft884_9|Name=EsuBft884_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=353bp
MGVSLCVSRHAAQVDACLHGACVEKRWLVLETPHPEETMVAACLICTGTT
PGKGSVELLAVKPALQGRGLGSHLLRRAEGILLNFRCRWFVRMRVPQWRE
DVLGWAGKRGYKETGGGLWGELDRESAEDLTRPTRYFMLTHDLLTDKKVA
GTFGDGTARYTAAAAAAAERVALGGARRPTSNSTSSEASKGLDGSTRKAK
DEEDSGRLAGFLSSVLKGLADAEVEDQEGIDAKGFATAPMADMAVGVAAA
TPSCPFLPPAPSDETGASDGATCQPCVGTTANNSIAAAGEHGSVPALRDD
FEVVELPSVGGGDGEAVDREESVEDLLSSLMRTLNTEQGRADFRRLAAIG
STS
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mRNA from alignment at Scaffold_302:362310..365514+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft884_9a-0001 ID=EsuBft884_9a-0001|Name=EsuBft884_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3205bp|location=Sequence derived from alignment at Scaffold_302:362310..365514+ (Ectocarpus subulatus male Bft15b)
ATGGGGGTATCCTTATGCGTTTCTCGCCATGCGGCGCAGGTGGATGCTTG
CTTGCACGGCGCCTGCGTCGAGAAGCGATGGTTGGTGCTTGAAACGCCTC
ATCCCGAGGAGACGATGGTAGCAGCTTGCCTGATCTGCACTGGAACCACT
CCCGGGAAGGTGAGTGGCACCGACGCGCCAGTAACCTTCGTCACCGAGAC
AGAGAGGGCTGGCTCCTCTGGATGGACTTTTGTTTTGGCCCTCGTGGACG
GTGATGTTGACTATCACCCATTGCGTTTGTGGCAATGTTTTTCACACCAA
GACTTTACGGCGGGACGGAACCTGCGGTTCCCATTAGCACACAGAAAGAA
CGTGCGTGTCGTTCATCCACCGTTAGGCAAGATACCTACCGTCAGGGGTG
TCATTGTGGCGCGTATCGCTTGAAGCGGGGAGACTATGCGTACGTCCCCA
ATAAACAAGGCGTTTCGACTGAAGGAGTATGCACTTGCTTGGGACTGCTT
TCGCGCTCAATAACCGTCGTCCTTGTTATTGCTCACGACCAGGTTGGTGG
GCGGTTCGGGGCGTCATTGTGATTGGTCGAGTACGCACCATGGGAAGTTT
TCATATATTCACACATGCTCGATATACAAATGGTTCGCTCGTTAGTACAC
CAACAACAATATGGGAGGGAGGGGATGAGTGACCTTCTCGAGAACCGATG
AACGCGCCGGGCCAACGATTCTCACTAAACCCTCCCTCACGGACTTGCTT
TTGCTCTGGTCAACCAACTGTAGGGCAGCGTCGAGCTGTTGGCGGTGAAG
CCTGCACTACAAGGCAGGGGGCTGGGGTCACATTTGCTACGGCGGGCGGA
GGGCATTCTACTCAACTTCCGCTGCAGGTGGTCAGCTCTCGCAGGCGGGC
GATTCAGCCCTCCCGTGTTTTTTCGATCGTGGTTGTGTGTGGCCAAGACC
CACCCGCTTTGTTTTGCACAACACCGCCTCAATCAGACTTGTATTTTGCT
CTTGTGCACACGATGCGGGGAAGGTATTGGGGCGGGCACGTTCTACCATG
GACCGTTGTTTAAAGGCTCACATACACCTGCAGATACACAACGGTGATTT
TCCAGACAGTAGGTCCACTCACCCTTGAAAGCGGTAGCACCAAGTGTCTT
AGGCGGCCTTTTCACGATGGAAGACATCCCGCCCCGGCTGCTTTTCGCGC
ATAGTATGGTGGAGAAGGTTATCAAGCATTCGAAGGGTCGATACACAAAC
TGCAGGAGATATCACATCCGCTTGATCCCACACTATCAGGGGATGAAGAT
CTAACTCGCTCGGAGATAGACATGTCATCTCGACACAGAGCGAGATGAAC
CTAATAGGTCGGTCGTCTGTCATCAATCCATATCCATGCTTGGGCTCTTA
CAAGCTCTGCCACGATAGTACAAAACGAGGGTGGTACAAGCATCTGAATC
ACCTGGAACACATCATCGGCTACACATGCCAGGACGAGAAAGACGAGTCA
CATTGAGCTTCGCACGGCCGTGCCTCTTTCTTTCCCGAAGCTCACCCCAC
CCTTTTTGTATGCATGGCAACATGCGTGCCTCCGTGCCGATTTCATTTAC
CCCAGTTACCTATGTGAGCGTTCGTTCCTTCGTGCCATCGGCCGTGCGCC
TTGGTCAGGTTCGTCAGGATGAGGGTGCCACAATGGAGGGAGGACGTGCT
CGGGTGGGCCGGTAAGCGGGGCTACAAGGAAACGGGAGGGGGTTTGTGGG
GCGAGCTGGACAGGGAGAGCGCGGAGGACCTCACGAGACCGACGCGGTAT
TTCATGCTGACGGTAAGTGACGCCACAGGAGCCTCTGCGGACTCATACGA
CACGTTTCCTGCGTATACGCAATGCCAATCGAATAATGTAAGCCACTGCC
CTCCGTTCAAGCAAAGATAGTTCGTTCATTTGCCTAGCATATGCCGTTCG
TTATCCAGACAAGACCACCGCACGCTCTGTTTCCTTGACATTGATGAAGA
TTGTCGTGACGTCTGCGGAATCTAAAATTCCCTGCTGTATGACTCCCGCT
CGCGCCCCTGTTGACGCATGCAGCACGACCTCCTTACGGACAAGAAGGTT
GCGGGTACCTTCGGCGATGGGACGGCTCGATACACCGCCGCCGCAGCTGC
AGCAGCCGAGAGAGTCGCCTTGGGCGGTGCCCGTAGGCCTACCTCGAATT
CGACATCAAGTGAGGCTTCGAAAGGACTGGACGGAAGCACTCGTAAAGCG
AAGGATGAAGAGGATAGTGGGCGTCTTGCGGGCTTCCTGTCGAGCGTTTT
GAAGGGTCTGGCCGATGCGGAGGTGGAAGATCAGGTAAGGAAGGTGAAGG
GGAAGTCGTGGCTGTCGATGCAACAGTTCGTATATACGGTAGAAGACGGG
CTCGCTTTGAAGCCTGCTGGCATTCTTGACGGCACTGCGGCACTGCAGTC
TTGCATGGTATCGGTTATGGTCGCTCTTCTTGTCCCTGCAAAGGACGTTG
ATTTGATGTCGGATACATGGCTGAGCGCTTTTCGTTGGAGGTGTGTTGAA
GAGGGGAACAAAGGGGCGCAGCTACCATGTCAGAGCGCTCCCTCTTCTCG
TTTATTGCACAAGTCATGCAAACAAAAAACGCACCCTGTCATTTCTCCCT
TTGCCTTGTGGTCTTGCCTCTATGGCTGAGACAGGAGGGAATCGACGCCA
AGGGATTTGCTACAGCACCCATGGCGGACATGGCCGTTGGAGTGGCAGCA
GCAACACCGAGTTGCCCGTTTCTGCCGCCAGCACCCAGCGATGAGACTGG
AGCTTCGGATGGGGCTACGTGCCAACCCTGTGTTGGTACCACCGCCAACA
ATTCTATCGCTGCCGCGGGCGAGCATGGCTCCGTGCCTGCTTTGAGGGAT
GACTTTGAGGTAGTTGAATTGCCAAGTGTTGGAGGGGGGGATGGTGAGGC
TGTGGACCGTGAGGAGAGCGTTGAGGACCTGCTCAGCTCTCTCATGCGCA
CTCTCAACACGGAACAAGGCAGGGCTGATTTTAGGAGGCTAGCTGCCATA
GGATCGACTTCCTGACGACGGAGATGGATTCTGCGAACTTCAACATCTCA
CATAGGCGTTTTTTGTATCTGTTCTGGCCAGTTTCACTGAACCTTTTTGC
TGTGAGGACTTATACGCATTCCTTGAGCCCGTGGCACGGTGGTACATGTG
GTGCC
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Coding sequence (CDS) from alignment at Scaffold_302:362310..365514+

>EsuBft884_9a-0001 ID=EsuBft884_9a-0001|Name=EsuBft884_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1062bp|location=Sequence derived from alignment at Scaffold_302:362310..365514+ (Ectocarpus subulatus male Bft15b)
ATGGGGGTATCCTTATGCGTTTCTCGCCATGCGGCGCAGGTGGATGCTTG
CTTGCACGGCGCCTGCGTCGAGAAGCGATGGTTGGTGCTTGAAACGCCTC
ATCCCGAGGAGACGATGGTAGCAGCTTGCCTGATCTGCACTGGAACCACT
CCCGGGAAGGGCAGCGTCGAGCTGTTGGCGGTGAAGCCTGCACTACAAGG
CAGGGGGCTGGGGTCACATTTGCTACGGCGGGCGGAGGGCATTCTACTCA
ACTTCCGCTGCAGGTGGTTCGTCAGGATGAGGGTGCCACAATGGAGGGAG
GACGTGCTCGGGTGGGCCGGTAAGCGGGGCTACAAGGAAACGGGAGGGGG
TTTGTGGGGCGAGCTGGACAGGGAGAGCGCGGAGGACCTCACGAGACCGA
CGCGGTATTTCATGCTGACGCACGACCTCCTTACGGACAAGAAGGTTGCG
GGTACCTTCGGCGATGGGACGGCTCGATACACCGCCGCCGCAGCTGCAGC
AGCCGAGAGAGTCGCCTTGGGCGGTGCCCGTAGGCCTACCTCGAATTCGA
CATCAAGTGAGGCTTCGAAAGGACTGGACGGAAGCACTCGTAAAGCGAAG
GATGAAGAGGATAGTGGGCGTCTTGCGGGCTTCCTGTCGAGCGTTTTGAA
GGGTCTGGCCGATGCGGAGGTGGAAGATCAGGAGGGAATCGACGCCAAGG
GATTTGCTACAGCACCCATGGCGGACATGGCCGTTGGAGTGGCAGCAGCA
ACACCGAGTTGCCCGTTTCTGCCGCCAGCACCCAGCGATGAGACTGGAGC
TTCGGATGGGGCTACGTGCCAACCCTGTGTTGGTACCACCGCCAACAATT
CTATCGCTGCCGCGGGCGAGCATGGCTCCGTGCCTGCTTTGAGGGATGAC
TTTGAGGTAGTTGAATTGCCAAGTGTTGGAGGGGGGGATGGTGAGGCTGT
GGACCGTGAGGAGAGCGTTGAGGACCTGCTCAGCTCTCTCATGCGCACTC
TCAACACGGAACAAGGCAGGGCTGATTTTAGGAGGCTAGCTGCCATAGGA
TCGACTTCCTGA
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