EsuBft884_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft884_6a-0001
Unique Name	EsuBft884_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_302	contig	Scaffold_302:334675..340555 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft884_6
Protein domains	PTHR24198
Protein domains	IPR020683
Protein domains	IPR002110
Owner	apollo_admin@sb-roscoff.fr
Note	ankyrin repeat and protein kinase domain-containing protein 1 os:homo sapiens gn:ankk1 pe:2 sv: [Automatic annotation]
Nb exon	2
Length	405
Hectar predicted targeting category	other localisation
Date last modified	2016-06-15
Date creation	2016-06-15

Cross References

External references for this mRNA


Database	Accession
GO	0071704
GO	0008092
GO	0072659
GO	0012505
GO	0043231
GO	0030054
GO	0048731
GO	0051049
GO	0045184
GO	0050794
GO	0048518
GO	0005856
GO	0016192
GO	0045202
GO	0016020
GO	0048468
GO	0044422
GO	1902582
GO	0044237
GO	0065008
GO	0016740
GO	0044304
GO	0044459
GO	0019899

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft884_6a	EsuBft884_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_302 334675..340555 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft884_6a-0001-exon	agat-exon-31790	Ectocarpus subulatus male Bft15b	exon	Scaffold_302 334675..334912 -
EsuBft884_6a-0001-exon	EsuBft884_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_302 340389..340555 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft884_6a-0001-cds	EsuBft884_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_302 334675..334912 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft884_6a-0001	EsuBft884_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_302 334675..340555 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_302:334675..340555-
coding sequence from alignment at Scaffold_302:334675..340555-

spliced messenger RNA

>EsuBft884_6a-0001 ID=EsuBft884_6a-0001|Name=EsuBft884_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=405bp|location=Sequence derived from alignment at Scaffold_302:334675..340555- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACTCTGGCCGCAGCAACACCGCCGCCAGCTGCACTGCCGTGCAGG
GCAGTCACCACCAAATGGTGGTCGGCTTTTGCTCGCGGGCAGCTTCGACC
CGAACACGCCAACTCGAGACTGCCAGACGCCGCTCCACCTCGTTGCTTTC
ACGGGGCACAAGGGCTGCGTCGACCCGAACTTGCCGACCCGAGACGGCCG
GACGCCGCTGCACCTAGCTGCTGTCGCGGGGCAGAAAGCGCCGGTGTTGA
GCTTGCTAGAGCACGGTACCACCATCGACGCACGGGACGCAACGGATGAG
TCGCCACGTGTCGAGGCCTCTTGCAGAGGCAGGCAAGCTATCGTGGAGAC
CCTGCTCTCCAAGGGGGCCGCCGCCAACCTCCGAGGAACCGTTCCGCTAC
GCTAG

protein sequence of EsuBft884_6a-0001

>EsuBft884_6 ID=EsuBft884_6|Name=EsuBft884_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=134bp
MRLWPQQHRRQLHCRAGQSPPNGGRLLLAGSFDPNTPTRDCQTPLHLVAF
TGHKGCVDPNLPTRDGRTPLHLAAVAGQKAPVLSLLEHGTTIDARDATDE
SPRVEASCRGRQAIVETLLSKGAAANLRGTVPLR

mRNA from alignment at Scaffold_302:334675..340555-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft884_6a-0001 ID=EsuBft884_6a-0001|Name=EsuBft884_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5881bp|location=Sequence derived from alignment at Scaffold_302:334675..340555- (Ectocarpus subulatus male Bft15b)
ATGAGACTCTGGCCGCAGCAACACCGCCGCCAGCTGCACTGCCGTGCAGG
GCAGTCACCACCAAATGGTGGTCGGCTTTTGCTCGCGGGCAGCTTCGACC
CGAACACGCCAACTCGAGACTGCCAGACGCCGCTCCACCTCGTTGCTTTC
ACGGGGCACAAGGGCTGGTATTGTAGGACATGGTGCATCCGTTGACGTAC
GGGACGCGGGTTGAGTCACCATTTATCGAGGCCTACAAAGCCTGTATTCG
CGGCTAGGGGCGGAAGGCCGCGGTGGGGCGTACTCTTATGTTTTGCATGT
CTTAGCGGTTAGACCATTGACCACGCGTCCTCGAGAGGACGGAGCATTGT
TCCCACAGGACCGATCACCGATGGCCAATCGTTCCTTNNNNNNNNNNNNN
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CCGAACTTGCCGACCCGAGACGGCCGGACGCCGCTGCACCTAGCTGCTGT
CGCGGGGCAGAAAGCGCCGGTGTTGAGCTTGCTAGAGCACGGTACCACCA
TCGACGCACGGGACGCAACGGATGAGTCGCCACGTGTCGAGGCCTCTTGC
AGAGGCAGGCAAGCTATCGTGGAGACCCTGCTCTCCAAGGGGGCCGCCGC
CAACCTCCGAGGAACCGTTCCGCTACGCTAG

Coding sequence (CDS) from alignment at Scaffold_302:334675..340555-

>EsuBft884_6a-0001 ID=EsuBft884_6a-0001|Name=EsuBft884_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=405bp|location=Sequence derived from alignment at Scaffold_302:334675..340555- (Ectocarpus subulatus male Bft15b)
ATGAGACTCTGGCCGCAGCAACACCGCCGCCAGCTGCACTGCCGTGCAGG
GCAGTCACCACCAAATGGTGGTCGGCTTTTGCTCGCGGGCAGCTTCGACC
CGAACACGCCAACTCGAGACTGCCAGACGCCGCTCCACCTCGTTGCTTTC
ACGGGGCACAAGGGCTGCGTCGACCCGAACTTGCCGACCCGAGACGGCCG
GACGCCGCTGCACCTAGCTGCTGTCGCGGGGCAGAAAGCGCCGGTGTTGA
GCTTGCTAGAGCACGGTACCACCATCGACGCACGGGACGCAACGGATGAG
TCGCCACGTGTCGAGGCCTCTTGCAGAGGCAGGCAAGCTATCGTGGAGAC
CCTGCTCTCCAAGGGGGCCGCCGCCAACCTCCGAGGAACCGTTCCGCTAC
GCTAG