EsuBft884_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft884_4a-0001
Unique NameEsuBft884_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_302contigScaffold_302:328204..332011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog42099.EPrPV00000013181
ProteomeIdEsuBft884_4
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsPTHR24188
Protein domainsIPR002110
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsIPR020683
Ownerapollo_admin@sb-roscoff.fr
Noteankyrin repeat domain-containing protein 50 os:homo sapiens gn:ankrd50 pe:1 sv:4 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length2248
Hectar predicted targeting categorysignal peptide
Evalue1.4e-05
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
KEGG koko:K04734
KEGG Pathwayko04024,ko04062,ko04064,ko04210,ko04380,ko04620,ko04621,ko04622,ko04623,ko04624,ko04657,ko04658,ko04659,ko04660,ko04662,ko04668,ko04722,ko04920,ko04926,ko04931,ko05120,ko05131,ko05134,ko05140,ko05142,ko05145,ko05160,ko05161,ko05162,ko05164,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05215,ko05220,ko05222,map04024,map04062,map04064,map04210,map04380,map04620,map04621,map04622,map04623,map04624,map04657,map04658,map04659,map04660,map04662,map04668,map04722,map04920,map04926,map04931,map05120,map05131,map05134,map05140,map05142,map05145,map05160,map05161,map05162,map05164,map05166,map05167,map05168,map05169,map05200,map05203,map05215,map05220,map05222
KEGG ModuleM00686
Descriptionprotein ubiquitination
COG categoryI
BRITEko00000,ko00001,ko00002,ko03000,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0072659
GO0051649
GO0043231
GO0050794
GO0030424
GO0048518
GO0005856
GO0044707
GO0016020
GO0008152
GO0044422
GO0044765
GO0065008
GO0044459
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft884_4aEsuBft884_4aEctocarpus subulatus male Bft15bgeneScaffold_302 328204..332011 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft884_4a-0001EsuBft884_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_302 330368..332011 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft884_4a-0001-exonagat-exon-31787Ectocarpus subulatus male Bft15bexonScaffold_302 328204..328785 -
EsuBft884_4a-0001-exonEsuBft884_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_302 329404..330751 -
EsuBft884_4a-0001-exonagat-exon-31788Ectocarpus subulatus male Bft15bexonScaffold_302 331652..331874 -
EsuBft884_4a-0001-exonagat-exon-31786Ectocarpus subulatus male Bft15bexonScaffold_302 331917..332011 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft884_4a-0001-exonagat-three_prime_utr-22675Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_302 328204..328785 -
EsuBft884_4a-0001-exonagat-three_prime_utr-22676Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_302 329404..330367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft884_4a-0001-cdsEsuBft884_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_302 330368..330751 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft884_4a-0001 ID=EsuBft884_4a-0001|Name=EsuBft884_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2248bp|location=Sequence derived from alignment at Scaffold_302:328204..332011- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGAGGTTCGAAGCAACCCCAGCCGACACTCTCGGGGCCAGGCTAT
AGCTCTGATCGCTGCAACGCTGCCAGGAGTCGCCACTGCTGGGCGCGTCG
ACCCGAACTTGCCAACCCGAGATAGCTGGACGCCGCTGCCCCTCAAATAT
CTCGCGGGGCAGAAAGCGCTGGTGTTGAGCTTGCTAGAGCACGGTACCAC
CGTCGACGTACGGGACGCAACGGGTGAGTCACCACGTGTCGAGGCCTCTT
GCAGAGGCAGGCAAGCTATCGTGGAGACCCTGCTCTCCAAGCGGGCCGCC
GCCAACCTCCGAGGAACCGTTCAGGAGATGGTTGAGATTGGGAGCAACCC
CAGCCGATGCTCTCGGGGCCAGATCATAGCCCTGGTCGCAGCAACGCTGC
CAGGAGCCACAACTGCTCTGCGGAGCCGTCACCGCGAAATGGCGATCGGC
TTGCTAGCGGGCAGCGTCGACTCGAACTTGCCGACCCGAGACGGCAGGAC
GCCGCTCCTCCTAGCTGCTCTCACCGGGAACAAAGCGCTGGTGTTGGGCT
TGTTAGGACACGGTACCACCATCGACGCACGGGACGCAACGGGTGAGTCG
CCATGTGTGGAGGCCTCCTACAGAAGCAGGCAAGCTATCGTGGAGACCCT
GCTCTCCAACGGGGCCGCCGCGGACCTCCGAGGAACCGTTCCGCTGTACT
AATATGCGCTCGACAGAGCCCCACGAGAAAGCTACGCCGAGGTAATCAGT
GTCCTTACCCGGGGCGGAGCCACGGTGAGCGCCCAAGACCGCCGAGGCGT
TACCGCACTACTCTATGACGTCTCGACTGTCTTGGGCGCTCACCGTGGCT
CCGCCCCGGGTAAGGACACTGATTACCTCGGCGTAGCTTTCTCGTGGGGC
TCTGTCGAGCGCATATTAGTACAGCGGAACGGTTCCTCGGAGGTCCGCGG
CGGCCCCGTTGGAGAGCAGGGTCTCCACGATAGCTTGCCTGCTTCTGTAG
GAGGCCTCCACACATGGCGACTCCGTCCCGTGCTTCGATGGTGGTACCGT
GTCCTAACAAGCTCAACACCAGCGCTTTGTTCCCGGTGAGAGCAGCTAGG
AGGAGCGGCGTCCGGCCGTCTCGGGTCGGCAAGTTTGAGTCGAAGATGCC
CGCTAGCAACCCGAAAACCATTTGGTGTTGACCACCCCGCATGGCAGTGC
CGCTGGCGGCGGTGTTGCTGCGGCCAGAGCTTCATGTTGTCCCGAGAGTA
TCGGCTAGCAGTATTAGGAGTACCTTCTGGGGTCACTTCGGGCGGCGCAC
GGAAACGCCACGGACCCAGTGGTGTGGCCGGGGTGTCATCGCTCTGCCCC
TCCCCCGGTTCCCGCGTTCGAAGATTTAACATCCAAGAAGAAGGCGCCCG
TAAAGAGCGGCGGTCGCGTGAGCGGCGGCGGCGATTCGGGCGACAGCGAC
AGTAGCCACCTCCGCGGGTCTACGTCTTCCAACCGTGGTCGCGCCCAGCC
GTCTTCTTCAGCGTCCAGCTCTTCAGAGCGCGCGGACAAGAAAGGAGTAA
AGAAGAAGAGCCGCACCTCCCGCCCGTCTTCGGACACGACGGGAGGAGCA
TCCTCGGATTCCGGTTCGGAACGTAGCCTTCCTCGGAAGACTTCTTCGGG
CAGGGTATCCAGGCACCAAGTGAAGCGGAGGCTGGACGACGGAGCCACGG
GCACGGATGCCTTCACGCTCCTTCTGCGGCTGCTGTCGGAGCAATTCGAT
GTCGGAGATCGACAGGAGTCGTTTTTGCGACTTCAGCAGTTTGGTGTTTC
GAATGGAACTTTGTTTGCGGATTACCTTAGGGCGTTCCGTCTTTTGGTTT
CTTCGGTGACCGGGTCTGAGCGTGTTTTGGCTCCTAGTGTATCGATGGTG
CTTGAGATCGTCAGGAATTCTGTAAGTAAGCAGTTTCCGTCTTTAGCTCC
GATGTTGTACCCTGGTGACCTGGCTACGGCCGTGACACCATTTGATTCGA
TTGATGCAATGCGGCAGGCGTTCGCGCCTTTGGCCACCAATAAAACCTCC
GCAATAGGAGGTTCAAAGTATTTTCTTTGTCTTCCACGCCTGGCTCTTCG
CAGCCCCGGCGTTCCCAGAACCGTGCCCCTGCACCTGCGCCTTCGGGCCG
GTGGGCACAAGGTTCTGCACACAATCCTGTTGTTTTGGCAGTTCAGTCAC
AGGATGGCGGTAATCATCCGTTTTCCCGCGATTACAATGCGTGGCCCG
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protein sequence of EsuBft884_4a-0001

>EsuBft884_4 ID=EsuBft884_4|Name=EsuBft884_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=233bp
MVEVRSNPSRHSRGQAIALIAATLPGVATAGRVDPNLPTRDSWTPLPLKY
LAGQKALVLSLLEHGTTVDVRDATGESPRVEASCRGRQAIVETLLSKRAA
ANLRGTVQEMVEIGSNPSRCSRGQIIALVAATLPGATTALRSRHREMAIG
LLAGSVDSNLPTRDGRTPLLLAALTGNKALVLGLLGHGTTIDARDATGES
PCVEASYRSRQAIVETLLSNGAAADLRGTVPLY
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mRNA from alignment at Scaffold_302:328204..332011-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft884_4a-0001 ID=EsuBft884_4a-0001|Name=EsuBft884_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3808bp|location=Sequence derived from alignment at Scaffold_302:328204..332011- (Ectocarpus subulatus male Bft15b)
ATGGTTGAGGTTCGAAGCAACCCCAGCCGACACTCTCGGGGCCAGGCTAT
AGCTCTGATCGCTGCAACGCTGCCAGGAGTCGCCACTGCTGGGCGGTGCC
GTCACCACCAAATGGTGATCGGCTAGCTAGCGGGCAGCGTCGACCCGAAC
TTGCCAACCCGAGATAGCTGGACGCCGCTGCCCCTCAAATATCTCGCGGG
GCAGAAAGCGCTGGTGTTGAGCTTGCTAGAGCACGGTACCACCGTCGACG
TACGGGACGCAACGGGTGAGTCACCACGTGTCGAGGCCTCTTGCAGAGGC
AGGCAAGCTATCGTGGAGACCCTGCTCTCCAAGCGGGCCGCCGCCAACCT
CCGAGGAACCGTACCACTACGCTAATCTGCGCTCGACAGAATCCCACGAG
AAAGTCACGCCGAGGTCATCGGTGTCCTCGTTCGGGGCGGAGCCACGGTG
AGCGCCCAAGACAGTCGAGACGTCACCGAGTAGTGCGGTGACGCCTCGGC
GGTCTTGGGCGCTCACCGTGGCTCTGCCCCGAAGGAGGACACCGAATACC
TCGGTATTTCTTCTTGTGCGACTCTGTCGAGCGCAGATTAGTACAGCGTA
CCGGTTCCTCGGAGATTGGTGGCGGCCCCCTTGGAGAGCAGGGTCTCCAT
GGTAGTGGACTTGCCTAGGAGGCCTCGACCAGTGGTGACTCACCCCTCGC
GTCTCGTGCGTCAACGGATGCACCGTGATCTACCATGCCCAACACCAGCG
CTTTCTGCCAGGTGAAAGAATTGAGTTGGAGCGGCGTCCGGCCGCCTCGG
GTTTGCGCGTTGATGTTGCCGGAGCTGCCCGCTAGCAAGCTGACCACGAT
TTGGTGGGGATCGCCCCGCACGCACAGTAACAGCTAGTAGATGCTCCTGG
CGGCGGTTTGGCTGCTGCGGGCAGTGACAGCCCCACCGACAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCCCGAGCAGCAGCAGCAGTGACGCC
GGCGGTGCCGGCGGCCCGGGCGGCGAAGAGTCCGGCGACCCAGGTGGGGA
CGGCGGTAGCGATGGTGATCCCGGCGACTCCGAGAACAACGAATAAGTTA
TGTTGCCACCAGAAAGCGCACAAAGTAGAGAGGCTTAAGAACGACATGTC
AGATGCTGTTGCCGAGAACTTGCCGAGAGACAAGAAATGAATCTTTTGAG
AGAAAACAGGGAAACTGAGTATGGCATCTCCCCTTTCCCCTGCATTGCTG
TGCGGAGCAGGTTCAGGAGATGGTTGAGATTGGGAGCAACCCCAGCCGAT
GCTCTCGGGGCCAGATCATAGCCCTGGTCGCAGCAACGCTGCCAGGAGCC
ACAACTGCTCTGCGGAGCCGTCACCGCGAAATGGCGATCGGCTTGCTAGC
GGGCAGCGTCGACTCGAACTTGCCGACCCGAGACGGCAGGACGCCGCTCC
TCCTAGCTGCTCTCACCGGGAACAAAGCGCTGGTGTTGGGCTTGTTAGGA
CACGGTACCACCATCGACGCACGGGACGCAACGGGTGAGTCGCCATGTGT
GGAGGCCTCCTACAGAAGCAGGCAAGCTATCGTGGAGACCCTGCTCTCCA
ACGGGGCCGCCGCGGACCTCCGAGGAACCGTTCCGCTGTACTAATATGCG
CTCGACAGAGCCCCACGAGAAAGCTACGCCGAGGTAATCAGTGTCCTTAC
CCGGGGCGGAGCCACGGTGAGCGCCCAAGACCGCCGAGGCGTTACCGCAC
TACTCTATGACGTCTCGACTGTCTTGGGCGCTCACCGTGGCTCCGCCCCG
GGTAAGGACACTGATTACCTCGGCGTAGCTTTCTCGTGGGGCTCTGTCGA
GCGCATATTAGTACAGCGGAACGGTTCCTCGGAGGTCCGCGGCGGCCCCG
TTGGAGAGCAGGGTCTCCACGATAGCTTGCCTGCTTCTGTAGGAGGCCTC
CACACATGGCGACTCCGTCCCGTGCTTCGATGGTGGTACCGTGTCCTAAC
AAGCTCAACACCAGCGCTTTGTTCCCGGTGAGAGCAGCTAGGAGGAGCGG
CGTCCGGCCGTCTCGGGTCGGCAAGTTTGAGTCGAAGATGCCCGCTAGCA
ACCCGAAAACCATTTGGTGTTGACCACCCCGCATGGCAGTGCCGCTGGCG
GCGGTGTTGCTGCGGCCAGAGCTTCATGTTGTCCCGAGAGTATCGGCTAG
CAGTATTAGGAGTACCTTCTGGGGTCACTTCGGGCGGCGCACGGAAACGC
CACGGACCCAGTGGTGTGGCCGGGGTGTCATCGCTCTGCCCCTCCCCCGG
TTCCCGCGTTCGAAGATTTAACATCCAAGAAGAAGGCGCCCGTAAAGAGC
GGCGGTCGCGTGAGCGGCGGCGGCGATTCGGGCGACAGCGACAGTAGCCA
CCTCCGCGGGTCTACGTCTTCCAACCGTGGTCGCGCCCAGCCGTCTTCTT
CAGCGTCCAGCTCTTCAGAGCGCGCGGACAAGAAAGGAGTAAAGAAGAAG
AGCCGCACCTCCCGCCCGTCTTCGGACACGACGGGAGGAGCATCCTCGGA
TTCCGGTTCGGAACGTAGCCTTCCTCGGAAGACTTCTTCGGGCAGGGTAT
CCAGGCACGTAGTACCGTCTCTCGTGGATGTTGCTTCTGACGATCGTCTT
AACGCTCTTTTGCGTGATGGTTATCTTGTGTTTTTGTTGCGTGGTAAGGA
CAAGTCTGTCGAGTTGACAGATTCTCGTGGTGTGGCAAATAAGAAACCGT
CTATTAAGACCGAACCCAGTGGAGTTGCTGTCGAAGCTGCTCCCCCGTCT
GTGAAAATTGAGCCCCTCGCCATAGCGAGTGCGCCAACCGATGATAGTGT
TTTGCCGCTTTCTTCCACCACTGCTCACGCTCGACACGCAACGGTTGCCG
CTGCTGCCTCGACAGTAGATGCCGCACATATTGCTCGTGTCCAACGTGAG
TACATCACCCTCAATCCTAAAAAAGTTGAGCGTGTTGCCACTATGCCTTT
CCCTGCGTCTTTGCTGCCGGTTGATGCGTACCAGCAGCTCATTCGCACCG
TTCGATCTGCGCTCACAGATATATTGCTGCTGTGTGATGATCGTAGCGTA
GGTTTGACGGACGCCGATTTTGTCCGAGGTTGGGAGCGCCCTCTCGAAAA
GCGAATTTTGAGTGCAATCTCCCCTGACAAACCTACTGCATCCGACCTTG
TCCTCTCCATTTCTGATTATTTTTAGCAAGTGAAGCGGAGGCTGGACGAC
GGAGCCACGGGCACGGATGCCTTCACGCTCCTTCTGCGGCTGCTGTCGGA
GCAATTCGATGTCGGAGATCGACAGGAGTCGTTTTTGCGACTTCAGCAGT
TTGGTGTTTCGAATGGAACTTTGTTTGCGGATTACCTTAGGGCGTTCCGT
CTTTTGGTTTCTTCGGTGACCGGGTCTGAGCGTGTTTTGGCTCCTAGTGT
ATCGATGGTGCTTGAGATCGTCAGGAATTCTGTAAGTAAGCAGTTTCCGT
CTTTAGCTCCGATGTTGTACCCTGGTGACCTGGCTACGGCCGTGACACCA
TTTGATTCGATTGATGCAATGCGGCAGGCGTTCGCGCCTTTGGCCACCAA
TAAAACCTCCGCAATAGGAGGTTCAAAGTATTTTCTTTGTCTTCCACGCC
TGGCTCTTCGCAGCCCCGGCGTTCCCAGAACCGTGCCCCTGCACCTGCGC
CTTCGGGCCGGTGGGCACAAGGTTCTGCACACAATCCTGTTGTTTTGGCA
GTTCAGTCACAGGATGGCGGTAATCATCCGTTTTCCCGCGATTACAATGC
GTGGCCCG
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Coding sequence (CDS) from alignment at Scaffold_302:328204..332011-

>EsuBft884_4a-0001 ID=EsuBft884_4a-0001|Name=EsuBft884_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=702bp|location=Sequence derived from alignment at Scaffold_302:328204..332011- (Ectocarpus subulatus male Bft15b)
ATGGTTGAGGTTCGAAGCAACCCCAGCCGACACTCTCGGGGCCAGGCTAT
AGCTCTGATCGCTGCAACGCTGCCAGGAGTCGCCACTGCTGGGCGCGTCG
ACCCGAACTTGCCAACCCGAGATAGCTGGACGCCGCTGCCCCTCAAATAT
CTCGCGGGGCAGAAAGCGCTGGTGTTGAGCTTGCTAGAGCACGGTACCAC
CGTCGACGTACGGGACGCAACGGGTGAGTCACCACGTGTCGAGGCCTCTT
GCAGAGGCAGGCAAGCTATCGTGGAGACCCTGCTCTCCAAGCGGGCCGCC
GCCAACCTCCGAGGAACCGTTCAGGAGATGGTTGAGATTGGGAGCAACCC
CAGCCGATGCTCTCGGGGCCAGATCATAGCCCTGGTCGCAGCAACGCTGC
CAGGAGCCACAACTGCTCTGCGGAGCCGTCACCGCGAAATGGCGATCGGC
TTGCTAGCGGGCAGCGTCGACTCGAACTTGCCGACCCGAGACGGCAGGAC
GCCGCTCCTCCTAGCTGCTCTCACCGGGAACAAAGCGCTGGTGTTGGGCT
TGTTAGGACACGGTACCACCATCGACGCACGGGACGCAACGGGTGAGTCG
CCATGTGTGGAGGCCTCCTACAGAAGCAGGCAAGCTATCGTGGAGACCCT
GCTCTCCAACGGGGCCGCCGCGGACCTCCGAGGAACCGTTCCGCTGTACT
AA
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