EsuBft883_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft883_8a-0001
Unique NameEsuBft883_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:31675..35229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft883_8
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length144
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_000130.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft883_8aEsuBft883_8aEctocarpus subulatus male Bft15bgeneScaffold_242 31675..35229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft883_8a-0001EsuBft883_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 31675..35193 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft883_8a-0001-exonagat-exon-1580Ectocarpus subulatus male Bft15bexonScaffold_242 31675..31806 +
EsuBft883_8a-0001-exonagat-exon-1579Ectocarpus subulatus male Bft15bexonScaffold_242 32553..32725 +
EsuBft883_8a-0001-exonEsuBft883_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 33562..34371 +
EsuBft883_8a-0001-exonagat-exon-1578Ectocarpus subulatus male Bft15bexonScaffold_242 34896..35229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft883_8a-0001-cdsEsuBft883_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 31675..31806 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft883_8a-0001-exonagat-three_prime_utr-22667Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 35194..35229 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft883_8a-0001 ID=EsuBft883_8a-0001|Name=EsuBft883_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1449bp|location=Sequence derived from alignment at Scaffold_242:31675..35229+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCGGCTGGAGGAGATGGAACACGGTTCGAAGAAGCGGGCAAAGGT
AGTCGCAAGGGTCGCAAGGGAGATTGCGGAGCTGAGAAAAGAGGGCCGCG
TGGAGAGGCAAAGGATAAGCCAGCTGCAGCAGGTTCAGTCTCACACTCCC
CAGCCGCAGAAGGCGCCAGTCCCTACTCCAAGCATCCCCAGCAGCAGCAG
CAGCAGCTGTGGCAATAGGAGTTTCCTTGAGGCCTTATCGCTCGAAGACT
CTCCGGCGGGCCCTGCTGTTGCCGTAGCGCATCAGCACCCAACGCCAGCT
AGGAGGTTGACCCCCTCCGGTGCCTCCAGGTACAACGCCCTCGAAGAAGG
GGAACTCCCTCCTCCGCCCCCGCCTCTGGCCCAGACCCGCGGTAATCGGT
CCGGCGAGGGTGAGGCCCTGGGGGGCAGCTACGCCGGTCATAATTGGAGC
TCAGGAGGAGGAGGAGGGGGGCCGAGACCGCACTTGACCCTGCTCATGCC
TGCGCACCCTCGCCTTAAGAGGGGGGGAAACCGGGGGTCTTCGCGTGGCA
GGCGTGTCCAGGCTCCTCTTTACGCCCAGACTGATGACGGTAAGGGGTGT
AGCGGCGGTGTTGCTGGCGGCGGTGGCGGCCGGCGGCGTGGTTCACGGTC
TCTAGGAGGACCGTTCCCAGGAACGGTTCGCGAGGACGGTGACGGTGGGT
TAGGCAGGCCAAGGTTTCCGGAGCAGAATGCAGGCCTTGGTGTCGATATC
GGTGGTGGCGTCGGGGGTGACGCTGGATCGCCGTCCCTAAGCGACAGCGG
CCAGAGCCTAGAGCCGGGGCAGGCGGCGCACAGGCTTTCCTGGCACGGGG
ACGATGCCCGTAGGGGTTTCGGGGTTGCTAGCGGCGGGGTCGGGGTTGCC
GGGGCATCGTGGCTGCGTCATCATATCTCGACGGCGTCGGAAGACACTGG
GTCTTGTTCAGTCGGGGAGGCGAGCAGCGGGGCGGAGATGGGGGAGGCGC
CTCCTGCTTTGTCGGAGGAGGATTTGGACGGTTTCCTGGAGGAAGGAGGC
GGCAGGGAGTGGGACCGATCATCGCGGCCCATGGTGGCGTTGAAAGTTGG
AAACAGGCCTGGCAGGCGGAGAAAAACGGAGATTCAGCGCGCCGTCGCAG
AAGCTGAGCTCGACCTGTGCACCGCAACCGCTGTGGACTACTACCGTGAC
CTCGCCCAAACAACGGAGTTAGCCGCCGAGCCCGCCGGGAAGGAAAAGGG
GGGCCCCGCGGAAGACTCTGATACAGCAGCAGTAGTACCGGCAGGCCAAC
TCAGAGATGCCGACGATGGTGTAGTTGGGGAAGATAAGGAGGCGTTTTCA
CCGGAGCAGAAGGACAGTGACCGAGCAGAGAGAAAGGAACTTGAGCCAGG
AGAAGTACCGTAGGGTTTAGGGTCTTCTAGGGCCATCGACCCATGTGTG
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protein sequence of EsuBft883_8a-0001

>EsuBft883_8 ID=EsuBft883_8|Name=EsuBft883_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=470bp
MHRLEEMEHGSKKRAKVVARVAREIAELRKEGRVERQRISQLQQVQSHTP
QPQKAPVPTPSIPSSSSSSCGNRSFLEALSLEDSPAGPAVAVAHQHPTPA
RRLTPSGASRYNALEEGELPPPPPPLAQTRGNRSGEGEALGGSYAGHNWS
SGGGGGGPRPHLTLLMPAHPRLKRGGNRGSSRGRRVQAPLYAQTDDGKGC
SGGVAGGGGGRRRGSRSLGGPFPGTVREDGDGGLGRPRFPEQNAGLGVDI
GGGVGGDAGSPSLSDSGQSLEPGQAAHRLSWHGDDARRGFGVASGGVGVA
GASWLRHHISTASEDTGSCSVGEASSGAEMGEAPPALSEEDLDGFLEEGG
GREWDRSSRPMVALKVGNRPGRRRKTEIQRAVAEAELDLCTATAVDYYRD
LAQTTELAAEPAGKEKGGPAEDSDTAAVVPAGQLRDADDGVVGEDKEAFS
PEQKDSDRAERKELEPGEVP
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mRNA from alignment at Scaffold_242:31675..35229+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft883_8a-0001 ID=EsuBft883_8a-0001|Name=EsuBft883_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3555bp|location=Sequence derived from alignment at Scaffold_242:31675..35229+ (Ectocarpus subulatus male Bft15b)
ATGCATCGGCTGGAGGAGATGGAACACGGTTCGAAGAAGCGGGCAAAGGT
AGTCGCAAGGGTCGCAAGGGAGATTGCGGAGCTGAGAAAAGAGGGCCGCG
TGGAGAGGCAAAGGATAAGCCAGCTGCAGCAGGTCAGTGGTTGTCTGTTG
CTTTTCACGGCAGGTAGCGGTGTACTGCTCTCCGAAGCAGCGTAGGGTTG
AGCTGCAGCAGGTCAGGCGTTGCTTGCTGCCTTTCACGGCAGGTAGACGC
GTATCGCTCTCCGAAGCAGTGTAGGATTGCCAACCCTAGGCTGTAGCGGG
TCAGGCGTGCTTGTTGCTTTTCACGGGAAGTGGTCGTGCACATACCTCTC
TCGAAGAAGCATCGGTTTCGCCTTGCAATCGAGTTTGGTTTTTCGTCGTG
GCTTTGGTTGTGAGCCTCGGGGTGCCGTATCTGTCTGCAAGAAAGGGATC
GTCTCGGCAGCGAGAATGTTGATATTTGCATGTGTCGCTTTGCGTCTATC
GTAGATAGCAGGCCAGATGTTCTTCGCGTTAGTGGAGTATTCTCTTTCGT
TTGTTTCACATCACAGCTTGTTTCGATATTTGGCGAACCGGTCTCCCCAC
GCGAACGGATAGCATGGGACCTCTACCTACCACGGCGGTTCTCGAGAGAA
AAAACACGACTGCGGTTCTCAGGGATGTCAAGTGTTCCTAACATCCCACG
GAACGCACCTTTCCCACTCGTCTTCGGGAGCCTGACTTCTCCCTAACTTG
GTTTGTCTCGTGAAGCCCGGTCGCAATAGTTACTTTCCCACTTCGAAATT
CTACGGGTTCCTCGCGCTTACATTGTCGAGTCGATCTCAAGACTACTCTT
TACGTTTGTCATCTATATCTTTCGGCAGGTTCAGTCTCACACTCCCCAGC
CGCAGAAGGCGCCAGTCCCTACTCCAAGCATCCCCAGCAGCAGCAGCAGC
AGCTGTGGCAATAGGAGTTTCCTTGAGGCCTTATCGCTCGAAGACTCTCC
GGCGGGCCCTGCTGTTGCCGTAGCGCATCAGCACCCAACGCCAGCTAGGA
GGTGAGACACCCTAATCCCGACAGCTGTCGTGGGCAAACTGTAGCCGTAA
TCTGTTGAGGCTGAGAACTGGCCGCCGTGTGTAAGTCCTACCAGAACTTG
GTTTCATTGGCTAGCAATGGAGTCGATTTTTTTGCTGCAAGCTGCAAAAC
TGCCTCGTGAGATGGTGATGATACCTCAATCCGCCATTTCCTACATGTAG
CCGGGGCAGGAATCGCACCACGATGACACTGTTTCTGGATCTATGATTAC
ACGCGTGTTGTTTGTGAAACCGTCAGACGTCTACAACATTGAACGCTCTT
GTTGCCGTTTCTCCAGGCAGGGATTTTCTACGTTTGATTTCACCTGTTGA
CTCACAACGCACACTACATTCATGACGAATACAAAAGATTTCGCGATAAA
ATCCAACGCTGCCAATCCGCCCGTTTCTGCCTGATGGGGCATACGGCACC
CTTTGCGTTTTCCTGATTCAAGCCTTCAAGCCTTCAATTCAAGCCTCTGC
ATCTCCGTTCCTTGGGACGTGACCGCGATAGCGATAGCGATAGCGATAGC
GAAAGCGATAGCGATAGCGATAGCGATTCTCACTTTATTTTCTTTGGTCC
CCTCGCGTGCTCTAAGCTGGTGCTGCTTGTGAGCCCGTTTTTCCATCTGC
TAATATAGTGCACCTATCTCCCGTTCTTTCATCAGCGAAAACCGAGCCGT
GTCTTTCTTCCTTCCCTTCCCTTCCCTTCCTTCCCTTGCCTCTCCTCTCC
TTTTCTTTCCGACGAAACCAGCGAGTCAAGGTCGTCCATGTCAGAGGGAC
AACTCCGAGGGTCCTTCAGCGACGGAGAGCTGGTCAGGTTGACCCCCTCC
GGTGCCTCCAGGTACAACGCCCTCGAAGAAGGGGAACTCCCTCCTCCGCC
CCCGCCTCTGGCCCAGACCCGCGGTAATCGGTCCGGCGAGGGTGAGGCCC
TGGGGGGCAGCTACGCCGGTCATAATTGGAGCTCAGGAGGAGGAGGAGGG
GGGCCGAGACCGCACTTGACCCTGCTCATGCCTGCGCACCCTCGCCTTAA
GAGGGGGGGAAACCGGGGGTCTTCGCGTGGCAGGCGTGTCCAGGCTCCTC
TTTACGCCCAGACTGATGACGGTAAGGGGTGTAGCGGCGGTGTTGCTGGC
GGCGGTGGCGGCCGGCGGCGTGGTTCACGGTCTCTAGGAGGACCGTTCCC
AGGAACGGTTCGCGAGGACGGTGACGGTGGGTTAGGCAGGCCAAGGTTTC
CGGAGCAGAATGCAGGCCTTGGTGTCGATATCGGTGGTGGCGTCGGGGGT
GACGCTGGATCGCCGTCCCTAAGCGACAGCGGCCAGAGCCTAGAGCCGGG
GCAGGCGGCGCACAGGCTTTCCTGGCACGGGGACGATGCCCGTAGGGGTT
TCGGGGTTGCTAGCGGCGGGGTCGGGGTTGCCGGGGCATCGTGGCTGCGT
CATCATATCTCGACGGCGTCGGAAGACACTGGGTCTTGTTCAGTCGGGGA
GGCGAGCAGCGGGGCGGAGATGGGGGAGGCGCCTCCTGCTTTGTCGGAGG
AGGATTTGGACGGTTTCCTGGAGGAAGGAGGCGGCAGGGAGTGGGACCGA
TCATCGCGGCCCATGGTGGCGTTGAAAGTTGGAAACAGGCCTGGCAGGTG
AGTTTGTGTGTCATCGACCCGTGTTCGTAGATGGGTATCGTAGTATAGCG
CCGGGTTGAACCGAAACGCCTGTTGGCTGTACACAAAAAAGCGTGTGTCT
GCGCTCGCTCATTGGCTGAGCATGGGATAGAGCACGAGTCGAGTGCTAAG
TTAGAAGACCTGCCGCCGAGAAATGTCAATTTTCGAAGGAGAACTGTTTC
CCGGTGCCCGCGTGTACGAGGCATCCCCTATATCTAGACTATGTCACCTT
TCCTACGGGATAAGGTAGAAGCCCCACACCATCTCCACTTCTCAAGATGT
TTGTTTCGGAACATGTGCGCCCTTTATGGGTGATTGGCCTGTGACCACTT
ACGGCGTCAGTTGGGCAGGTAGGGATGGATGTTTGAAGGTACTGAGCAAA
GGCCGGATGGTCCTTTTTTTTTTCGCTAAGAGAATTTTTTTTCGCCAAGA
GAAAACACCAAGAGATGTGTGCCACAACAAGAGAGCTATGCCCGAAACAA
CTCGCCCTCCGTGAACACCAGGCGGAGAAAAACGGAGATTCAGCGCGCCG
TCGCAGAAGCTGAGCTCGACCTGTGCACCGCAACCGCTGTGGACTACTAC
CGTGACCTCGCCCAAACAACGGAGTTAGCCGCCGAGCCCGCCGGGAAGGA
AAAGGGGGGCCCCGCGGAAGACTCTGATACAGCAGCAGTAGTACCGGCAG
GCCAACTCAGAGATGCCGACGATGGTGTAGTTGGGGAAGATAAGGAGGCG
TTTTCACCGGAGCAGAAGGACAGTGACCGAGCAGAGAGAAAGGAACTTGA
GCCAGGAGAAGTACCGTAGGGTTTAGGGTCTTCTAGGGCCATCGACCCAT
GTGTG
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Coding sequence (CDS) from alignment at Scaffold_242:31675..35229+

>EsuBft883_8a-0001 ID=EsuBft883_8a-0001|Name=EsuBft883_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1413bp|location=Sequence derived from alignment at Scaffold_242:31675..35229+ (Ectocarpus subulatus male Bft15b)
ATGCATCGGCTGGAGGAGATGGAACACGGTTCGAAGAAGCGGGCAAAGGT
AGTCGCAAGGGTCGCAAGGGAGATTGCGGAGCTGAGAAAAGAGGGCCGCG
TGGAGAGGCAAAGGATAAGCCAGCTGCAGCAGGTTCAGTCTCACACTCCC
CAGCCGCAGAAGGCGCCAGTCCCTACTCCAAGCATCCCCAGCAGCAGCAG
CAGCAGCTGTGGCAATAGGAGTTTCCTTGAGGCCTTATCGCTCGAAGACT
CTCCGGCGGGCCCTGCTGTTGCCGTAGCGCATCAGCACCCAACGCCAGCT
AGGAGGTTGACCCCCTCCGGTGCCTCCAGGTACAACGCCCTCGAAGAAGG
GGAACTCCCTCCTCCGCCCCCGCCTCTGGCCCAGACCCGCGGTAATCGGT
CCGGCGAGGGTGAGGCCCTGGGGGGCAGCTACGCCGGTCATAATTGGAGC
TCAGGAGGAGGAGGAGGGGGGCCGAGACCGCACTTGACCCTGCTCATGCC
TGCGCACCCTCGCCTTAAGAGGGGGGGAAACCGGGGGTCTTCGCGTGGCA
GGCGTGTCCAGGCTCCTCTTTACGCCCAGACTGATGACGGTAAGGGGTGT
AGCGGCGGTGTTGCTGGCGGCGGTGGCGGCCGGCGGCGTGGTTCACGGTC
TCTAGGAGGACCGTTCCCAGGAACGGTTCGCGAGGACGGTGACGGTGGGT
TAGGCAGGCCAAGGTTTCCGGAGCAGAATGCAGGCCTTGGTGTCGATATC
GGTGGTGGCGTCGGGGGTGACGCTGGATCGCCGTCCCTAAGCGACAGCGG
CCAGAGCCTAGAGCCGGGGCAGGCGGCGCACAGGCTTTCCTGGCACGGGG
ACGATGCCCGTAGGGGTTTCGGGGTTGCTAGCGGCGGGGTCGGGGTTGCC
GGGGCATCGTGGCTGCGTCATCATATCTCGACGGCGTCGGAAGACACTGG
GTCTTGTTCAGTCGGGGAGGCGAGCAGCGGGGCGGAGATGGGGGAGGCGC
CTCCTGCTTTGTCGGAGGAGGATTTGGACGGTTTCCTGGAGGAAGGAGGC
GGCAGGGAGTGGGACCGATCATCGCGGCCCATGGTGGCGTTGAAAGTTGG
AAACAGGCCTGGCAGGCGGAGAAAAACGGAGATTCAGCGCGCCGTCGCAG
AAGCTGAGCTCGACCTGTGCACCGCAACCGCTGTGGACTACTACCGTGAC
CTCGCCCAAACAACGGAGTTAGCCGCCGAGCCCGCCGGGAAGGAAAAGGG
GGGCCCCGCGGAAGACTCTGATACAGCAGCAGTAGTACCGGCAGGCCAAC
TCAGAGATGCCGACGATGGTGTAGTTGGGGAAGATAAGGAGGCGTTTTCA
CCGGAGCAGAAGGACAGTGACCGAGCAGAGAGAAAGGAACTTGAGCCAGG
AGAAGTACCGTAG
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