EsuBft883_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft883_6a-0001
Unique NameEsuBft883_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:46490..51005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LDL2
ProteomeIdEsuBft883_6
Protein domainsIPR001055
Protein domainsIPR001041
Protein domainsPTHR23426
Protein domainsIPR012675
Ownerapollo_admin@sb-roscoff.fr
Noteadrenodoxin-like mitochondrial os:danio rerio gn:fdx1l pe:2 sv:1 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1735
Hectar predicted targeting categorymitochondrion
Evalue8.98e-122
EggNOG OGsCOG0633@1|root,KOG3309@2759|Eukaryota
Ec32 ortholog description2Fe-2S ferredoxin-type domain
Ec32 orthologEc-15_000150.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameFDX1L
KEGG koko:K22071
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006091,GO:0006629,GO:0006694,GO:0006700,GO:0006790,GO:0007553,GO:0007554,GO:0008150,GO:0008152,GO:0008202,GO:0008207,GO:0008610,GO:0009055,GO:0009058,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010565,GO:0010566,GO:0010817,GO:0010893,GO:0016043,GO:0016125,GO:0016226,GO:0016491,GO:0019216,GO:0019218,GO:0019222,GO:0022607,GO:0022900,GO:0031163,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0032350,GO:0032352,GO:0034754,GO:0042445,GO:0042446,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045834,GO:0045940,GO:0045966,GO:0045998,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0048037,GO:0048518,GO:0048522,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0050794,GO:0050810,GO:0051094,GO:0051186,GO:0051239,GO:0051240,GO:0051536,GO:0051537,GO:0051540,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090030,GO:0090031,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:2000026
Description2 iron, 2 sulfur cluster binding
COG categoryC
BRITEko00000,ko03029
Cross References
External references for this mRNA
DatabaseAccession
GO0051537
GO0048868
GO0005759
GO0019243
GO0009055
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft883_6aEsuBft883_6aEctocarpus subulatus male Bft15bgeneScaffold_242 46490..51005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft883_6a-0001EsuBft883_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 46497..49880 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft883_6a-0001-exonagat-exon-1561Ectocarpus subulatus male Bft15bexonScaffold_242 46490..46704 +
EsuBft883_6a-0001-exonagat-exon-1565Ectocarpus subulatus male Bft15bexonScaffold_242 47755..47797 +
EsuBft883_6a-0001-exonagat-exon-1562Ectocarpus subulatus male Bft15bexonScaffold_242 48347..48453 +
EsuBft883_6a-0001-exonagat-exon-1564Ectocarpus subulatus male Bft15bexonScaffold_242 49040..49169 +
EsuBft883_6a-0001-exonagat-exon-1563Ectocarpus subulatus male Bft15bexonScaffold_242 49472..49523 +
EsuBft883_6a-0001-exonEsuBft883_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 49818..51005 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft883_6a-0001-exonagat-five_prime_utr-14676Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 46490..46496 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft883_6a-0001-cdsEsuBft883_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 46497..46704 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft883_6a-0001-exonagat-three_prime_utr-22665Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 49881..51005 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft883_6a-0001 ID=EsuBft883_6a-0001|Name=EsuBft883_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1735bp|location=Sequence derived from alignment at Scaffold_242:46490..51005+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGCAAGCATGGCGGAGTTCGGACCTCTCCTGCTGCGAACAATAACCTCGG
TGACCTCTCGAGCGTTGTCTCGGAATGCGAAGGGTGCTGCACGGCAATGC
CGTGAGAGATGCAGCGCCGCAGCGGCAGCGTCGGAAGCCAGAGCAGTAGC
AGCGCCGAGCGTTTCCGCGTTCCAGCATTTGGAGCGGAGGCGGGGCATTT
CTTCCAGCGCAAGGGCTTGCCATGGGGATCACGAAGAGGGCTTCGAACAC
GCGGAAACGGTGGAGATTACTTGGGAGAACAAGGACGGCTTGAAGAAGAA
GACGGCGGCCAAGTGCGGCATGAACCTCATGAGGGTGGCGCACAAGCACG
GGATCGACTTGGAAGGTGCCTGCGAGGGCGTTTGTGCTTGCTCTACGTGC
CACGTGATAATGTCAAACGAGGTGTTCGACCAACTGCCGGAGGCGAGCGA
GGACGAAGAAGACATGCTTGACCTAGCCTTCGGCTTAACCGAAACGTCGC
GACTCGGCTGCCAAGTCATCGTTACTCCGGAAATGGACGGAATAGTGGTG
AAACTGCCGGCAGCGACTAGAAATTTCTACGTAGATGGCCACGTCCCCCA
GCCCCATTAAGACACTGGTGATATTTTACTGCTGTGGCGGTTTCAGTGAG
TCTTTGAAGGAGAAGGCTGGGGGTGCAATATTAAGCCCCCCCCTCACAAG
GACGAGCTGCCTGTCCCTGTCCCTACCTTCTGAAGGCTTGGTTGGTGGTG
GGAGGGGGGTGTAGCACGCGAGCGCGGTTGAGAACCAACCTAAATAGGGG
CCACCTGTTGTGACGAGCGAAGTGTTCCTGTTGCTTTGATACAAAAAGTG
TTGAAAGTATTGAAAGGTATAATGCCTCGCCGTGTTTTTAACACCACAGC
CCTTGGGAGCAATGAGACGGTTTCTGCCCCCCCGTCGACCGGCGCGCCGA
GGAGGTGTGTAACGAATATAGGTCTTGTGAAACACCGCTTCCGTGCACCT
GTCTCTGTCGTTGGTCCTCGAAGCGTCCTGCCAGAGACTCTGTGCCGTTC
GTTGACTTCTTGTTCGCACATTGCACACTTTGGAGCATCCGGTGCAAGCG
GCAAGACGGGGAGGGTGTTTGAGAAAGAACATCAGAGACCATGTGTCGAG
GTCGTCAGGCCTGTTTGTACATGGCGTTTTTTGGTCAACCCTCTTCTGTC
GGTCGTTCTTTCTTCCTGTTTCCCGTTGCCATCTGCCTGCTCGAGGGGTT
GTCGTGCGAGGTATGGCGATTGCGGTTATCCATGGGAAAATGAAGGCTGG
GGGTGTTAGGATAAAAATAATTGACGGGTGTGGCGGACGGGGTCGGTCCT
GGATATTTTACGGAGCCACTTTTAAGGCATTTCGTGATTTTCTAAACTAC
GTGGGCGCTCTCTCTCTCAATCTCTGTCATTGCCCGTTGTTGCGACAAAA
ACTTTCCCCGTTGGGAATACCAAGTCGATATCGGTAAACTACTCGAAGTA
TGTAGTTCTTTTTGTGGAGGACAGGGGTATTGCAGTCTAGAGGTGATTCT
TCCACGAAGGTCACTCAATACCTTGAGCCCGCCAAATTCATCTGTTCAGA
TCTTTAGCACGGATGGGTGTACGGCGCATCAAGAGGAGGGGTTGACGTGT
AGGGCAGGTGTGTGGAGGTGATGTTGTACACTATTACTGGTACACTGGTG
ATGAAAAATGACTGCAAGGTACGATCTGAGCCGAG
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protein sequence of EsuBft883_6a-0001

>EsuBft883_6 ID=EsuBft883_6|Name=EsuBft883_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=200bp
MAEFGPLLLRTITSVTSRALSRNAKGAARQCRERCSAAAAASEARAVAAP
SVSAFQHLERRRGISSSARACHGDHEEGFEHAETVEITWENKDGLKKKTA
AKCGMNLMRVAHKHGIDLEGACEGVCACSTCHVIMSNEVFDQLPEASEDE
EDMLDLAFGLTETSRLGCQVIVTPEMDGIVVKLPAATRNFYVDGHVPQPH
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mRNA from alignment at Scaffold_242:46490..51005+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft883_6a-0001 ID=EsuBft883_6a-0001|Name=EsuBft883_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4516bp|location=Sequence derived from alignment at Scaffold_242:46490..51005+ (Ectocarpus subulatus male Bft15b)
GGCAAGCATGGCGGAGTTCGGACCTCTCCTGCTGCGAACAATAACCTCGG
TGACCTCTCGAGCGTTGTCTCGGAATGCGAAGGGTGCTGCACGGCAATGC
CGTGAGAGATGCAGCGCCGCAGCGGCAGCGTCGGAAGCCAGAGCAGTAGC
AGCGCCGAGCGTTTCCGCGTTCCAGCATTTGGAGCGGAGGCGGGGCATTT
CTTCCAGCGCAAGGGGTAAGGCGAGACCGTGCCCTGAAGCTGGCAGTGGT
GACAGGGACTATGCCAGTGTTTTTTGCCAGTTGGTCTTTTCAGGACAACA
ACAGCTCCTGTATTGCACCAGTTTGGCAAACCCACTCAACTGAAAGGTGG
TGGATGTGAAAAGGTCCCAGCATCCTTTGCCAGGGGGTTGCTGAGTAATG
GAGGTCGGACTTGACCATGGGGGCGGTTCAGGCAACTCGAATTGTAGCAC
ATGGTACGGGTTGCCTCTGGGCTGCTTGTGTCCAGAGTTGGCTTACACCT
TGCTCACCCTGATTTAGATATGCTTACACCATCTAAACAGCATGTGTATC
TTGTACTCGTGAGGCATGTGCACGTAGGAGCATGTAGGTTGAGATTACAG
CAGAAACCGCGCGGTACCGCAGGAGGACCGACTCAGCTGCTACTGCGTTG
CCATCATGGCATGTGTGTAGCGGATTGCACTTGGCGGTGCACCGACTCAT
GACCGGCTGTTCAAGATATATGCCGACAGAAACCCTTGCTGCCGAAGGAA
GCTATTATGAAAGCTCCTTGACCTCACCTTGTGAGAGCCCGCCCCCCAGG
TGTTCCACACAGAACGTCGTCACCGCTGTAGACTTGCACCCGCATGTTTT
CGTCTTATCGCAAAGCCCGGATTTGTAGCATCAGTCCGAAGTCATTACAC
CCCTGTGCGATGAAAATGCACTAAAGAAATGGTTTAACTGTAAAACGACA
GCACGGGGGTGCGATGACTTGGCGAGCCTGCCGTTTGTCGCCGCATTCAA
GTACCTTTGATGACAACTGGGTTCTCTAGCATCTGTCATTTCCGAGACAG
CGTTTTATGTAGAGGGGGTTTGACTGATAGCCGGTGTCTACAAGTAATGC
ATACACACGTACACACCCATAGAACTCTAGAAGGTATGCAAGTATCTGCA
CCTCAAGAGGTCTCATTTCTGGTATCTTTAATGTTATCGCGTCGCCCAAG
CCTCACCTCTGCTGTCGTCCGCCGCACGTGCGTTTCGTTTGCACCTGTTG
GTTCCGCAATTGCAGCTTGCCATGGGGATCACGAAGAGGGCTTCGAACAC
GCGGAAACGTAAGAGGACAACGACACGAACCGGTATTTCTGCTGTCTCAG
ACAGGTCTGCAGTTGCTAGGACTACGCAATAGTGTCAGCTGATGGGAGCG
GTATGCGGTTCAACCGTGCCCAACATGCCCCTCGTTGGTGTGCCGCTTTG
TAGAGTAGGCAGAATAATCGGTAGTGCAGCGGGGCGGAACACCTTTGAAG
CCGAATTCATAAATGTTAAGGCTGTAGTCTGCCAGCGCTAATGGTTTGAC
ATTGACTGCTTCTCTAAAAGTGAGTCGAGGGTATGAGACCCAGGCTGAAC
TCTTGAATCGTATCGTATTACACAGCTCAAAGCGGAGGAAGGGGTGGCCG
CGGCTGACATATTTTGTTCGCTTGCCGCCGTCGTCACGGTAGCTGATTTT
TTGTACCGAACGGTTACACTGCAGGGAGTCTGGGAGCCATCAAATGATAC
TAGTGCGTGCATCTTAGACACCCGTATCAACATCTGTCGCAACTTCGGAC
ACACGCCCGATCGAATAACGCTCGCCATGTCCATGGCTAAACCGCCATCG
GCTACAGGGTGGAGATTACTTGGGAGAACAAGGACGGCTTGAAGAAGAAG
ACGGCGGCCAAGTGCGGCATGAACCTCATGAGGGTGGCGCACAAGCACGG
GATCGACTTGGAAGGTGCGGTTCCGCCATAGTTGTTGCGGCATTAAGAAT
CCCCCAACTCATCCCAAACAGCGATGAATTGACTCGGAATTGCCCGTCGA
CCATTGCAACCACCCATCGTATCGATTGTAGTATCGTCGCGTGTTGCCAA
CTAAATGGTAATGTTTAGAGGGTAGTACCGTAGGCCACATCGCAAGCAGC
TTGCGCGCTGCGTCATACGAGCGACGTGCCATCGCCACTCCATGGATTAC
CCGATTATTGCTCAAGAATGGTGTGCCGTCGTGAATGTGACTTGCGGCTG
GTCTGGTAGACATGTATCATACATGTTTTCGGATGCTGGTTTGAATGCTC
CCTTCCCCTTCCCTCAGAAAGCAGTTGCCCGGGTTGTGTGCTCGAGATTG
AGCTTTACGGACTGCAGGGAGAACAAATGAGTATGCAGAGGAGGTCTAGC
TGTTTGTCGGTTTGAACGACAAAGGGTAAGTTTCCTTGTTTTGGATGTAG
CCACCTTCTCGCGTATGCCACTTAGAAAGCGAAGCTGTTTATCAGGCCAA
AGTGTTGTTAATTATGGTCATCGAAATTTCTGTTTGGCGTGGTTTCGCAG
GTGCCTGCGAGGGCGTTTGTGCTTGCTCTACGTGCCACGTGATAATGTCA
AACGAGGTGTTCGACCAACTGCCGGAGGCGAGCGAGGACGAAGAAGACAT
GCTTGACCTAGCCTTCGGCTTAACCGAAACGTGAGTCTTGCGTGTGTGTT
TTCATATTTGTATCGACCGCGCTAACCGGCGGACCATTGAAAAGACGTCA
GTCTCAGAGCGGTTGCGTGTGCGTGTGGGGCGTTGACTGGCGAAAGAGAA
CACGAACACATGGTTGAAATTCGTTCTCGATGGTCTGGTTCGGTTTGAGT
TGATTCGTTTTGACACGTTTGTCGCGAGTCTGCAGGTGATGATGTTTGAT
ACGCGCAGTCCTTTCCTACCGTATGTGTCTGACGCCGCCCGTGTCACTTT
GATATTTTGCATGTTGGCCCTCTTCGTGTCAGGTCGCGACTCGGCTGCCA
AGTCATCGTTACTCCGGAAATGGACGGAATAGTGGTGAGCGCTTCTGGCC
GTCTCCAGTGTCGATGTATTTTGGTCGTTGTCGTTGCCTGTTTGAAGTCG
TCACCTGCCTGTATTGTGACACATGTCATACACATTAGTGGTGTCTTCCT
CCGCTGCAGTCTCACGGGACTTAGTCAGTGCCATAGATGGCTTGCTCTCT
GCCCGCCGCCTTACCCTTGTAACGTCCATACATTTTATTTTATTTTTTTC
TGTTCAAGCAACTAAATATGATCCCCGCTCGTCGATATCCCTCCTCTTGT
TATTACCTCTCTTTCATTCCCACCGCAGGTGAAACTGCCGGCAGCGACTA
GAAATTTCTACGTAGATGGCCACGTCCCCCAGCCCCATTAAGACACTGGT
GATATTTTACTGCTGTGGCGGTTTCAGTGAGTCTTTGAAGGAGAAGGCTG
GGGGTGCAATATTAAGCCCCCCCCTCACAAGGACGAGCTGCCTGTCCCTG
TCCCTACCTTCTGAAGGCTTGGTTGGTGGTGGGAGGGGGGTGTAGCACGC
GAGCGCGGTTGAGAACCAACCTAAATAGGGGCCACCTGTTGTGACGAGCG
AAGTGTTCCTGTTGCTTTGATACAAAAAGTGTTGAAAGTATTGAAAGGTA
TAATGCCTCGCCGTGTTTTTAACACCACAGCCCTTGGGAGCAATGAGACG
GTTTCTGCCCCCCCGTCGACCGGCGCGCCGAGGAGGTGTGTAACGAATAT
AGGTCTTGTGAAACACCGCTTCCGTGCACCTGTCTCTGTCGTTGGTCCTC
GAAGCGTCCTGCCAGAGACTCTGTGCCGTTCGTTGACTTCTTGTTCGCAC
ATTGCACACTTTGGAGCATCCGGTGCAAGCGGCAAGACGGGGAGGGTGTT
TGAGAAAGAACATCAGAGACCATGTGTCGAGGTCGTCAGGCCTGTTTGTA
CATGGCGTTTTTTGGTCAACCCTCTTCTGTCGGTCGTTCTTTCTTCCTGT
TTCCCGTTGCCATCTGCCTGCTCGAGGGGTTGTCGTGCGAGGTATGGCGA
TTGCGGTTATCCATGGGAAAATGAAGGCTGGGGGTGTTAGGATAAAAATA
ATTGACGGGTGTGGCGGACGGGGTCGGTCCTGGATATTTTACGGAGCCAC
TTTTAAGGCATTTCGTGATTTTCTAAACTACGTGGGCGCTCTCTCTCTCA
ATCTCTGTCATTGCCCGTTGTTGCGACAAAAACTTTCCCCGTTGGGAATA
CCAAGTCGATATCGGTAAACTACTCGAAGTATGTAGTTCTTTTTGTGGAG
GACAGGGGTATTGCAGTCTAGAGGTGATTCTTCCACGAAGGTCACTCAAT
ACCTTGAGCCCGCCAAATTCATCTGTTCAGATCTTTAGCACGGATGGGTG
TACGGCGCATCAAGAGGAGGGGTTGACGTGTAGGGCAGGTGTGTGGAGGT
GATGTTGTACACTATTACTGGTACACTGGTGATGAAAAATGACTGCAAGG
TACGATCTGAGCCGAG
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Coding sequence (CDS) from alignment at Scaffold_242:46490..51005+

>EsuBft883_6a-0001 ID=EsuBft883_6a-0001|Name=EsuBft883_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=603bp|location=Sequence derived from alignment at Scaffold_242:46490..51005+ (Ectocarpus subulatus male Bft15b)
ATGGCGGAGTTCGGACCTCTCCTGCTGCGAACAATAACCTCGGTGACCTC
TCGAGCGTTGTCTCGGAATGCGAAGGGTGCTGCACGGCAATGCCGTGAGA
GATGCAGCGCCGCAGCGGCAGCGTCGGAAGCCAGAGCAGTAGCAGCGCCG
AGCGTTTCCGCGTTCCAGCATTTGGAGCGGAGGCGGGGCATTTCTTCCAG
CGCAAGGGCTTGCCATGGGGATCACGAAGAGGGCTTCGAACACGCGGAAA
CGGTGGAGATTACTTGGGAGAACAAGGACGGCTTGAAGAAGAAGACGGCG
GCCAAGTGCGGCATGAACCTCATGAGGGTGGCGCACAAGCACGGGATCGA
CTTGGAAGGTGCCTGCGAGGGCGTTTGTGCTTGCTCTACGTGCCACGTGA
TAATGTCAAACGAGGTGTTCGACCAACTGCCGGAGGCGAGCGAGGACGAA
GAAGACATGCTTGACCTAGCCTTCGGCTTAACCGAAACGTCGCGACTCGG
CTGCCAAGTCATCGTTACTCCGGAAATGGACGGAATAGTGGTGAAACTGC
CGGCAGCGACTAGAAATTTCTACGTAGATGGCCACGTCCCCCAGCCCCAT
TAA
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