EsuBft883_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft883_5a-0001
Unique Name	EsuBft883_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_242	contig	Scaffold_242:54482..55459 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	8479.XP_005314530.1
ProteomeId	EsuBft883_5
Protein domains	IPR027124
Protein domains	IPR005135
Owner	apollo_admin@sb-roscoff.fr
Note	craniofacial development protein 2 os:bos taurus gn:cfdp2 pe:1 sv:2 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	978
Evalue	1.28e-15
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39VM0@33154\|Opisthokonta,3BPUP@33208\|Metazoa,3D6HY@33213\|Bilateria,48ETK@7711\|Chordata,49BUS@7742\|Vertebrata
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Endonuclease/Exonuclease/phosphatase family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft883_5a	EsuBft883_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_242 54482..55459 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft883_5a-0001-exon	EsuBft883_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 54482..55459 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft883_5a-0001-cds	EsuBft883_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_242 54482..55459 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft883_5a-0001	EsuBft883_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_242 54482..55459 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_242:54482..55459+
coding sequence from alignment at Scaffold_242:54482..55459+

spliced messenger RNA

>EsuBft883_5a-0001 ID=EsuBft883_5a-0001|Name=EsuBft883_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=978bp|location=Sequence derived from alignment at Scaffold_242:54482..55459+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACCCCCTTTCCGCCTCCCCCCCTCCTCCCCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAAAGGGTCCAGAGCTG
GAGAGCCACGCCGCTCCGGGACAGGAAGACACCTCGCTGGGAAAGGCAAG
CACCGGGTTAACTCTTAGATTGACCCGAGGATCCTANCTACACGAGGCAG
CGAAACAGGACATTTCGTTTGTCGGTCTGCAGGAGGTCAGGAGACCAGGG
CGAACGGAGTTCACAGCATCCGGTTTTCGGGTGTTCACCTGTGGCACGGA
CAAGGGTGGTACGCATGGCGTCGGAATCGCTGTGGAGGAGGCGCTGTGCA
AGGCCTCCCAGTACACCACGGAGTACGTTGACGAGCGCCTCATGGCTATG
AGGTTTGAGATGACGGGCCACCGCGGAGCGGTGAACTTCGTTGCTGCGTA
TGCCCCAACAGACGTCGCCACCGCCGACAGTAAACGCATGTTCTGGGAAA
AACTTGACAGTCTCGTGCGGCGTATCCCCGCTAAAGAGTGTGTTTTCGTG
CTCATGGATGCCAATGCCCAGACCGGAGGAGGGATAGCCGGGGAAAACGA
AGGAACCATGGGCGAGTACGGGCGCAATGAGCTGAACGACAACGGTCGGC
TGCTGCTGACCTTCGCCACAGACAACAGACTAGCGGTCCTCAACACCTTC
TTCGACACACGGAGGAGCGGGATATGGCATACGTTCAACGGCCCGTCGGG
ACGCGAACGTAGGTGCCTCGATTGCTGA

protein sequence of EsuBft883_5a-0001

>EsuBft883_5 ID=EsuBft883_5|Name=EsuBft883_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=325bp
MPTPFPPPPLLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGPEL
ESHAAPGQEDTSLGKASTGLTLRLTRGSXLHEAAKQDISFVGLQEVRRPG
RTEFTASGFRVFTCGTDKGGTHGVGIAVEEALCKASQYTTEYVDERLMAM
RFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLVRRIPAKECVFV
LMDANAQTGGGIAGENEGTMGEYGRNELNDNGRLLLTFATDNRLAVLNTF
FDTRRSGIWHTFNGPSGRERRCLDC

mRNA from alignment at Scaffold_242:54482..55459+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft883_5a-0001 ID=EsuBft883_5a-0001|Name=EsuBft883_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=978bp|location=Sequence derived from alignment at Scaffold_242:54482..55459+ (Ectocarpus subulatus male Bft15b)
ATGCCCACCCCCTTTCCGCCTCCCCCCCTCCTCCCCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAAAGGGTCCAGAGCTG
GAGAGCCACGCCGCTCCGGGACAGGAAGACACCTCGCTGGGAAAGGCAAG
CACCGGGTTAACTCTTAGATTGACCCGAGGATCCTANCTACACGAGGCAG
CGAAACAGGACATTTCGTTTGTCGGTCTGCAGGAGGTCAGGAGACCAGGG
CGAACGGAGTTCACAGCATCCGGTTTTCGGGTGTTCACCTGTGGCACGGA
CAAGGGTGGTACGCATGGCGTCGGAATCGCTGTGGAGGAGGCGCTGTGCA
AGGCCTCCCAGTACACCACGGAGTACGTTGACGAGCGCCTCATGGCTATG
AGGTTTGAGATGACGGGCCACCGCGGAGCGGTGAACTTCGTTGCTGCGTA
TGCCCCAACAGACGTCGCCACCGCCGACAGTAAACGCATGTTCTGGGAAA
AACTTGACAGTCTCGTGCGGCGTATCCCCGCTAAAGAGTGTGTTTTCGTG
CTCATGGATGCCAATGCCCAGACCGGAGGAGGGATAGCCGGGGAAAACGA
AGGAACCATGGGCGAGTACGGGCGCAATGAGCTGAACGACAACGGTCGGC
TGCTGCTGACCTTCGCCACAGACAACAGACTAGCGGTCCTCAACACCTTC
TTCGACACACGGAGGAGCGGGATATGGCATACGTTCAACGGCCCGTCGGG
ACGCGAACGTAGGTGCCTCGATTGCTGA

Coding sequence (CDS) from alignment at Scaffold_242:54482..55459+

>EsuBft883_5a-0001 ID=EsuBft883_5a-0001|Name=EsuBft883_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=978bp|location=Sequence derived from alignment at Scaffold_242:54482..55459+ (Ectocarpus subulatus male Bft15b)
ATGCCCACCCCCTTTCCGCCTCCCCCCCTCCTCCCCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAAAGGGTCCAGAGCTG
GAGAGCCACGCCGCTCCGGGACAGGAAGACACCTCGCTGGGAAAGGCAAG
CACCGGGTTAACTCTTAGATTGACCCGAGGATCCTANCTACACGAGGCAG
CGAAACAGGACATTTCGTTTGTCGGTCTGCAGGAGGTCAGGAGACCAGGG
CGAACGGAGTTCACAGCATCCGGTTTTCGGGTGTTCACCTGTGGCACGGA
CAAGGGTGGTACGCATGGCGTCGGAATCGCTGTGGAGGAGGCGCTGTGCA
AGGCCTCCCAGTACACCACGGAGTACGTTGACGAGCGCCTCATGGCTATG
AGGTTTGAGATGACGGGCCACCGCGGAGCGGTGAACTTCGTTGCTGCGTA
TGCCCCAACAGACGTCGCCACCGCCGACAGTAAACGCATGTTCTGGGAAA
AACTTGACAGTCTCGTGCGGCGTATCCCCGCTAAAGAGTGTGTTTTCGTG
CTCATGGATGCCAATGCCCAGACCGGAGGAGGGATAGCCGGGGAAAACGA
AGGAACCATGGGCGAGTACGGGCGCAATGAGCTGAACGACAACGGTCGGC
TGCTGCTGACCTTCGCCACAGACAACAGACTAGCGGTCCTCAACACCTTC
TTCGACACACGGAGGAGCGGGATATGGCATACGTTCAACGGCCCGTCGGG
ACGCGAACGTAGGTGCCTCGATTGCTGA