EsuBft883_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft883_3a-0001
Unique NameEsuBft883_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:88359..91005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft883_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length137
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft883_3aEsuBft883_3aEctocarpus subulatus male Bft15bgeneScaffold_242 88359..91005 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft883_3a-0001-exonagat-exon-1560Ectocarpus subulatus male Bft15bexonScaffold_242 88359..89540 -
EsuBft883_3a-0001-exonEsuBft883_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 90817..91005 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft883_3a-0001-cdsEsuBft883_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 88359..89498 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft883_3a-0001-exonagat-five_prime_utr-14674Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 89499..89540 -
EsuBft883_3a-0001-exonagat-five_prime_utr-14675Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 90817..91005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft883_3a-0001EsuBft883_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 88359..89498 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft883_3a-0001 ID=EsuBft883_3a-0001|Name=EsuBft883_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1371bp|location=Sequence derived from alignment at Scaffold_242:88359..91005- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCCCCCCCTCCCCCCGCTGTACCGCAGAACCTGCCCTTCGAGACACTC
ATCAGTAGGTGCAAGCAACTGTTTGACGATAACAGGAGGAGCAAAGAAAA
GGCGGAGAAGGACTCCGAGGGCAAGACCGGGGAAAGCGAGAAGGACGCTG
AAGTATTCGACGAGGAGAACGACGAGGGGTCCGAGGAAGGATTGCAAATT
GCTCAACGCTACGGCATGTCGTGGGGCCGGTATGGCATCGAAGAAGGGCA
CAGGCCCGTCGAAGGAGCACATGGCACAGGGACTGGCGTTGCGTGACGGT
GCCCGCGACGGTTCGCCAGGCCGAGGTGCGACACAGGGTTTCCCGGTGGT
ACAACCGGCAGGTGGCAGAGGCAAGGACAGCAGCAGCAACTCCAAGTCCC
GCTACTCTGCGGCCGCTGCGGCGAACAACCGGTCCCGGGGGGAGGATTGT
CGGTTCCGACTGGAATCGAAGACCTCTGACGGCGAAGGTTCTTCTCTTTC
GTTGGCAACCGCAACCGGTGAAGACGAGGAGGAAGAGGAGGAGCTATCCG
ACGAACCAGATGCGTGGGACGAAGACCGGAAGGCGACCCTGTTAGCAAGC
GGCAAGGCTGGGCAGGGGACGAGGAGCGGGAAGGGTAGGGGAAAGCGGAC
CCGGTCTATTCCACCTCTATCCTCCACGACAGGTGGCTCTGCCGGCCTCC
AAAACAGGCTGAGCAGCGTGATCGACTTGGTCTGCCAGAAAATGACCGCG
CCGGCGGTGCCGACTGTGGGTGGTGGCAAGCAGGGAGGGTCGAGCAGCAG
GACGGAATCGGATGAGATCAAAGACCTGCTCAAGAGGAGCATCCAGCGGC
AGGAGCAGGTGAACCAGCAGATCTTCACCGCAATGGGGATGATGCATGGT
GGCGTCCAACCGCACCCACTCGGGATGCAAGCGGGTGCAGGCACGCTTCC
TCCCTTCGGCGGGTGCGCTGGATTCGGCCGTAGCGCCGCCTCGGCAGGGC
TGGCTCTTCCTGCAGCTGTCGGAGTACCTCCTCGTGCGCAACCTTCGCAG
GGTGCAACCGCGTCGGGTGCAAGGTCGTTGCCCGTGGTTGCTGGGGGCGG
ACAAGCCGCTCGCGTCAGTGATGCCTCGTCCGCAGGAGGGGGGAAACGTC
GTCCGAGCTTCGGTGCTTCTTATGGCGGACGAGCGACTGGTGCAACCTCT
GCAGTCGCAGCGGGCAGTGCAGCCCGGGTTAGGGCCCCGCGGAAGGCTAC
GCCTACCAAGAGTGGACAGACGCTCTGCGAGTGTGGTCTTCCGGCATCCC
ACAGTGAGGTGAAGTCGGTGAGTCTGTTGCACACATACTTTGGGGTTTTT
GTCTACATCTGCAAGGAGTAA
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protein sequence of EsuBft883_3a-0001

>EsuBft883_3 ID=EsuBft883_3|Name=EsuBft883_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=379bp
MASKKGTGPSKEHMAQGLALRDGARDGSPGRGATQGFPVVQPAGGRGKDS
SSNSKSRYSAAAAANNRSRGEDCRFRLESKTSDGEGSSLSLATATGEDEE
EEEELSDEPDAWDEDRKATLLASGKAGQGTRSGKGRGKRTRSIPPLSSTT
GGSAGLQNRLSSVIDLVCQKMTAPAVPTVGGGKQGGSSSRTESDEIKDLL
KRSIQRQEQVNQQIFTAMGMMHGGVQPHPLGMQAGAGTLPPFGGCAGFGR
SAASAGLALPAAVGVPPRAQPSQGATASGARSLPVVAGGGQAARVSDASS
AGGGKRRPSFGASYGGRATGATSAVAAGSAARVRAPRKATPTKSGQTLCE
CGLPASHSEVKSVSLLHTYFGVFVYICKE
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mRNA from alignment at Scaffold_242:88359..91005-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft883_3a-0001 ID=EsuBft883_3a-0001|Name=EsuBft883_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2647bp|location=Sequence derived from alignment at Scaffold_242:88359..91005- (Ectocarpus subulatus male Bft15b)
CCCCCCCCCCTCCCCCCGCTGTACCGCAGAACCTGCCCTTCGAGACACTC
ATCAGTAGGTGCAAGCAACTGTTTGACGATAACAGGAGGAGCAAAGAAAA
GGCGGAGAAGGACTCCGAGGGCAAGACCGGGGAAAGCGAGAAGGACGCTG
AAGTATTCGACGAGGAGAACGACGAGGGGTCCGAGGAAGGTCGATCTTGT
TCTGTGTTTTAGAGGCCTCACAAACCATGAAGCGGAACGGCGTTGCTACT
CGGTGGTTGCCAACATGCAGTTGATCACGTGCCGCCAAAAAGCCTAAACT
GACGCAAATTAGTTTTCGAAGACCTGAAGTCAGAGCCCGGTTGGCCCGAA
GGGTTTCTTAGCATCATCGAGTGGTCTTTTACTTCATATTTCGGGTGTTG
CTGTAGTCCTTCTCACGCGGGCCCGCCGTTCATAGGACGCGGCGTCGTCT
CCCATAACAAATCTAGACCGTGCACTCAAAAGGACAACGCGTAGTCTTGC
AAAGCTTATTTTTTCGCCAGCGGTACTGGCCCCCCCCCCCCCCCACCCAC
GACGTTTGCTAGGATTAGACAATAGCGTCGATAACTTTGGGAATGCCAAA
TGATAAACCCCCAGTTTTCCCCGTGGAGATGGTGCAAAGTCCGCCGCCAA
CCAGTGCAAAAAGTCGTCCTTCCCCTGGCAACCGCTCGAACTGGGCGTGG
GCGTAGCGCCTACCTTGTCGAACTTGTTAAGGTGTTCGGGTCAGCTACAT
TCGGGGGTAGCTAGCAGTGAAGCCACTGAGAGCTACGCAAGAGCTATGTA
GGTCACAGATTTAGGGGTTGCAAAACAACGGGACAAATGCCGATGAAACT
CAAAGAGGACCAGCACGGTTGCCATACCAATGTTGCCTGACTGGGTTACG
GTAGTAGTACGGCGTGTATTATGTGGATCACTGTACTCCCGTGTCCGGCG
GGTCCTACGCAGTCCATCTTGTCTTGTGCTTTTGGTCGAGCAAAGCGGTT
ATGAGCTCACTCGAGCGAAGCGGACGGGTTTTTTCTGCCCTCCGCATTTG
TCGTTGGGGCGTCCATTGACGCCCCCCCTCCCCCCCCAATACCCCCGCCA
AACAACCAAACAGGTACCCTCGAGCCAACTGATGGTGTGCAAAGTCTACC
ACACGTGTCGCTCCCCCCACCCACCAACCCCCCTCCTCCCCGACCCCCCA
CCCCCATTGGTTGTAGGTTTCCCGGAGCAGGGTCATGGATTGATCTGGGC
AGGAGCTTGCATTAACTTCGGAATCGAATGATCATGTGTTTTAGACATGC
GCTGTCTTCACTAAACAGTTCGATGATGGACCTCTACGATATGTAGCTGT
TAGTTCGGGAGGGCGACAACAAGCAGCAAGAGTTGGGAGTGCATGGTCTC
TGCCGCCCTGACGTGCCCGCCCCACATGTCCATTCTTCGTCTGACATGTG
CTGTGCGTCGTTCAGGATTGCAAATTGCTCAACGCTACGGCATGTCGTGG
GGCCGGTATGGCATCGAAGAAGGGCACAGGCCCGTCGAAGGAGCACATGG
CACAGGGACTGGCGTTGCGTGACGGTGCCCGCGACGGTTCGCCAGGCCGA
GGTGCGACACAGGGTTTCCCGGTGGTACAACCGGCAGGTGGCAGAGGCAA
GGACAGCAGCAGCAACTCCAAGTCCCGCTACTCTGCGGCCGCTGCGGCGA
ACAACCGGTCCCGGGGGGAGGATTGTCGGTTCCGACTGGAATCGAAGACC
TCTGACGGCGAAGGTTCTTCTCTTTCGTTGGCAACCGCAACCGGTGAAGA
CGAGGAGGAAGAGGAGGAGCTATCCGACGAACCAGATGCGTGGGACGAAG
ACCGGAAGGCGACCCTGTTAGCAAGCGGCAAGGCTGGGCAGGGGACGAGG
AGCGGGAAGGGTAGGGGAAAGCGGACCCGGTCTATTCCACCTCTATCCTC
CACGACAGGTGGCTCTGCCGGCCTCCAAAACAGGCTGAGCAGCGTGATCG
ACTTGGTCTGCCAGAAAATGACCGCGCCGGCGGTGCCGACTGTGGGTGGT
GGCAAGCAGGGAGGGTCGAGCAGCAGGACGGAATCGGATGAGATCAAAGA
CCTGCTCAAGAGGAGCATCCAGCGGCAGGAGCAGGTGAACCAGCAGATCT
TCACCGCAATGGGGATGATGCATGGTGGCGTCCAACCGCACCCACTCGGG
ATGCAAGCGGGTGCAGGCACGCTTCCTCCCTTCGGCGGGTGCGCTGGATT
CGGCCGTAGCGCCGCCTCGGCAGGGCTGGCTCTTCCTGCAGCTGTCGGAG
TACCTCCTCGTGCGCAACCTTCGCAGGGTGCAACCGCGTCGGGTGCAAGG
TCGTTGCCCGTGGTTGCTGGGGGCGGACAAGCCGCTCGCGTCAGTGATGC
CTCGTCCGCAGGAGGGGGGAAACGTCGTCCGAGCTTCGGTGCTTCTTATG
GCGGACGAGCGACTGGTGCAACCTCTGCAGTCGCAGCGGGCAGTGCAGCC
CGGGTTAGGGCCCCGCGGAAGGCTACGCCTACCAAGAGTGGACAGACGCT
CTGCGAGTGTGGTCTTCCGGCATCCCACAGTGAGGTGAAGTCGGTGAGTC
TGTTGCACACATACTTTGGGGTTTTTGTCTACATCTGCAAGGAGTAA
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Coding sequence (CDS) from alignment at Scaffold_242:88359..91005-

>EsuBft883_3a-0001 ID=EsuBft883_3a-0001|Name=EsuBft883_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1140bp|location=Sequence derived from alignment at Scaffold_242:88359..91005- (Ectocarpus subulatus male Bft15b)
ATGGCATCGAAGAAGGGCACAGGCCCGTCGAAGGAGCACATGGCACAGGG
ACTGGCGTTGCGTGACGGTGCCCGCGACGGTTCGCCAGGCCGAGGTGCGA
CACAGGGTTTCCCGGTGGTACAACCGGCAGGTGGCAGAGGCAAGGACAGC
AGCAGCAACTCCAAGTCCCGCTACTCTGCGGCCGCTGCGGCGAACAACCG
GTCCCGGGGGGAGGATTGTCGGTTCCGACTGGAATCGAAGACCTCTGACG
GCGAAGGTTCTTCTCTTTCGTTGGCAACCGCAACCGGTGAAGACGAGGAG
GAAGAGGAGGAGCTATCCGACGAACCAGATGCGTGGGACGAAGACCGGAA
GGCGACCCTGTTAGCAAGCGGCAAGGCTGGGCAGGGGACGAGGAGCGGGA
AGGGTAGGGGAAAGCGGACCCGGTCTATTCCACCTCTATCCTCCACGACA
GGTGGCTCTGCCGGCCTCCAAAACAGGCTGAGCAGCGTGATCGACTTGGT
CTGCCAGAAAATGACCGCGCCGGCGGTGCCGACTGTGGGTGGTGGCAAGC
AGGGAGGGTCGAGCAGCAGGACGGAATCGGATGAGATCAAAGACCTGCTC
AAGAGGAGCATCCAGCGGCAGGAGCAGGTGAACCAGCAGATCTTCACCGC
AATGGGGATGATGCATGGTGGCGTCCAACCGCACCCACTCGGGATGCAAG
CGGGTGCAGGCACGCTTCCTCCCTTCGGCGGGTGCGCTGGATTCGGCCGT
AGCGCCGCCTCGGCAGGGCTGGCTCTTCCTGCAGCTGTCGGAGTACCTCC
TCGTGCGCAACCTTCGCAGGGTGCAACCGCGTCGGGTGCAAGGTCGTTGC
CCGTGGTTGCTGGGGGCGGACAAGCCGCTCGCGTCAGTGATGCCTCGTCC
GCAGGAGGGGGGAAACGTCGTCCGAGCTTCGGTGCTTCTTATGGCGGACG
AGCGACTGGTGCAACCTCTGCAGTCGCAGCGGGCAGTGCAGCCCGGGTTA
GGGCCCCGCGGAAGGCTACGCCTACCAAGAGTGGACAGACGCTCTGCGAG
TGTGGTCTTCCGGCATCCCACAGTGAGGTGAAGTCGGTGAGTCTGTTGCA
CACATACTTTGGGGTTTTTGTCTACATCTGCAAGGAGTAA
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