EsuBft882_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft882_9a-0001
Unique NameEsuBft882_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_618contigScaffold_618:940756..944295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft882_9
Protein domainsCoil
Protein domainsIPR005162
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length292
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_002920.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft882_9aEsuBft882_9aEctocarpus subulatus male Bft15bgeneScaffold_618 940756..944295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft882_9a-0001EsuBft882_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_618 942331..944235 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft882_9a-0001-exonEsuBft882_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_618 940756..941688 -
EsuBft882_9a-0001-exonagat-exon-70046Ectocarpus subulatus male Bft15bexonScaffold_618 942300..944295 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft882_9a-0001-exonagat-three_prime_utr-22661Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_618 940756..941688 -
EsuBft882_9a-0001-exonagat-three_prime_utr-22662Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_618 942300..942330 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft882_9a-0001-cdsEsuBft882_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_618 942331..944235 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft882_9a-0001-exonagat-five_prime_utr-14673Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_618 944236..944295 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft882_9a-0001 ID=EsuBft882_9a-0001|Name=EsuBft882_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2929bp|location=Sequence derived from alignment at Scaffold_618:940756..944295- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAGGGCGGAAAGCCGCACCCCGGTGAGAAAAGTTGGCCTACGCAGCAGCA
GCAACAGCCAATGACTCTCCGCGAGCAGCTCCAAAAACTCGTTTCGCAGA
AACTCGCCGCAAAGGGTGAGCTTGACCATGCCGGGCTTTTGGCTTTGGAA
ACGCTCAGCAAGATGGCACCGGAGGGCGAAGTGGATCCAGTTGGTGGATC
ATCTGCTGGTGGTGGTGCTAGTGTTGGTGTTGTTGACTCTCGTCCTAGGA
GAATCCTCCCGCCTGGCATCGAGAAATTGACGAAATTTAGCGGCAAGGAT
CCTGGTGCTGTGTCCGACGTGCTCAACAGATTCCACTCCCTTGTCGTCGC
GGCCCTGCCTGGCAGCTCGCCTGGCACAGTGAATAAGGCTCTGAACCGAG
ATGTCGTGTTTGTCTTGGAGGGTGCAGCCCTGAAGTTCTTCAAATTGCTG
AAAGCAGGACAGATAGAGTGGGAACCTACCCCGCCTCCCTCCCTCCAGCA
GCGGGGGGCAGAGGCGGGAGCAGGGGGCGTTCAGCAACAACCAGGAAAGC
CACCTTTCCGGCCCCCGTCGACCTGGGCTGAAGTCTACAATGCTTTCCAC
GACCACTATCTGCCGGCGGATGGCATCGCACGGACATCAGACACACTATT
TTCACTTCGCCAAGCTGCAGACGAATCCGTCCCGACGTTGGTCCAGCGAC
AAATGGGCCTGACCAATCACTTGAGCCGGTTAATTGAAGCCAACGGGGGG
CAGACAACTTTTTGGGAAGCAATCATGATACGGTTGTTCGAGAGAGCGCT
CCGCGCCGACCTGCAGCGGCTTCAGCACGCGGAGCCTCCGTGCCCGACTT
TTCAGGAAAGTGTTGACCGTGCAGATCGTAACGCTCTAAGATTGGAGAAG
GAGAAGAGTAAGAGAAGGAATGATGCTGGCGAAGGAGGTGGCGGTGGAGA
GCGTCCGCCAGAGGACAATCGACTTCGCCTCGGCACGAAACCGCAGGGCG
GCAGCAGTGGTGTGGGAGAGGGGAAGGGAGGGGTGCAAAGTTCAGATGGT
TCGAAAGGACCAGCGCTTGTCGGGTCTTCTTCATCGTTGGCCAGGGGTCC
GCTGACCTTGTCGGGTACCTTTGAAGACGTGGCTCCTGTTGTAGGGGGCT
TCCAGCCCCCACACGGGAAGACAGAGAAAAAACTTGGTGGAGGAGGCGCA
GGAGAGGGACGTGAGGGTGATCGACTTCAGCACGGTAGTAAAACGCAGCG
CAACAGTGACGTAGGAGATGGGAAGGAACTGGTGCACGGCTGGGGTGGCT
TGAAGGGGGCAGCGCATGCCCGGTCTCCTTCTGTGGTCAGGGGTCCGCTT
ACCGTGCCAGGTGACGTTGAAGGCGAAACTGTTGCTGTGGGGAGCTTCCA
AACCGGACACGGGAGAAGTGCAGACCGAAACGGCGGTGGAGACCGGGAAA
GGGCCGAGAGCATCTTGTCTGACGATGAGTCCCGATCCACCCCTGCTTGG
CAAGAAGAGCCGGAAGAACAAGTAGTGCCTGGAGGATCTGGGGAGTGGGG
CGATGGTGGTGAGGTCAAACACGATCGCAGCCGTGGGTCGCGAGGCAAGA
AGTCTCAAAAGCGAACGCGGGATTGGCAAGAAGACCAGGGCCGCAAGCGG
GACAGGCAAGAAGACCAGACCCCTTCGCGGAACAAGCAAGAAGGCCATCA
TGCCCGTGCCCAGCGTCGTCCATCTCAGCCCCACCGGCGGCGGCAGCCAG
TTCCCGACAACGTACTGCCGTGTACCAATCCAGCGTGCAAGGCGAAGCGA
AAAACTCATTCTTCGAACATCTGTTTTTACCACCCAGACCCGGCACAAGC
TCTACGAAACCGGATGAGAAGGAAAGACATATTCTTGAAGACCCATGCTA
TGGAGGACGCGGGTAACGATGCGGGTAGTGGGCTCCACAACAATTTCGAC
GAACCTGAGTTCTAGGGGGCGCTGAATCACCTCTACTGAACTTAAGTTTG
GCAGGATGACGGATGGCCGTAGGCGCTAGCCGGGCAATTGAATATGGAAC
GAGAGGGCGTGGGTGAAAGGTCGAGACGGCTTCGCAACTTCCAGCACGGG
TTTGTCGACGACCCATCGGGAGTCACCTTGATATCCGCATAAGCGCGGTG
CTTCGTGCATGCGTTTGTCGAAGGAGCAGTTGAAGGTCAACCTCTACTCA
AATGGCCGACACGTAGAGACAAGAGGACGGCGTAAAGGATGATGGGCCAG
CTTGCCGGCGTCAAAGCAGTGTTATTGGACCGATGTACGAAAGGAGACAA
TTGACGAGATTTCCCACATTTACCTGGACCGTTGTGCACCAGAGTGTCGA
AGGCGATCCTTCGTAGAAAAATCCTACGACTAGCGGCATCGCAGAGACTT
GGGGTCAAGGTCTGATGACCTCGATATTAAGCTCTAGTGGGATGTGCGCT
TGTCACACGTGCAACAGCACAATGTGGCCTTCGCTGGGAGCCGTGCTCCC
TTCTACGCGCTGGAATTTCGACTTTTGAGAAGTCTAACGGCATGTCCGCC
GTTGTCATTACAAGTAGGGTCAGGGACCTTCGCGTTACATAAGTTTCGCA
TGCCATAGCCTTATGGTGGAACTCCACTTCCCGTGTTGTCGGATGTACGT
CGTATAGAAGTGGGATAATTCTACCGAACGTTTGATGACGTGGTTGATCC
GAAGAAACCTCCCTTGTATTTTTTAGTTTATACTTCGCACCACTTTTGCT
GTAGCCCTCGAAAGCACCGGCTGCCTTACAGGCAGCTATGATTTGCATCG
TGAGTTTCTGCCCAGACATATGTGTGCATGCATATTAAGAAGCTTGACCG
GGTGACTGTGTGTGCGTGAATCGTTGCGTTGCAAATATGGGCAAAAATGC
AACCATCTCGAGGACTGGGAAGATACGGC
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protein sequence of EsuBft882_9a-0001

>EsuBft882_9 ID=EsuBft882_9|Name=EsuBft882_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=634bp
MTLREQLQKLVSQKLAAKGELDHAGLLALETLSKMAPEGEVDPVGGSSAG
GGASVGVVDSRPRRILPPGIEKLTKFSGKDPGAVSDVLNRFHSLVVAALP
GSSPGTVNKALNRDVVFVLEGAALKFFKLLKAGQIEWEPTPPPSLQQRGA
EAGAGGVQQQPGKPPFRPPSTWAEVYNAFHDHYLPADGIARTSDTLFSLR
QAADESVPTLVQRQMGLTNHLSRLIEANGGQTTFWEAIMIRLFERALRAD
LQRLQHAEPPCPTFQESVDRADRNALRLEKEKSKRRNDAGEGGGGGERPP
EDNRLRLGTKPQGGSSGVGEGKGGVQSSDGSKGPALVGSSSSLARGPLTL
SGTFEDVAPVVGGFQPPHGKTEKKLGGGGAGEGREGDRLQHGSKTQRNSD
VGDGKELVHGWGGLKGAAHARSPSVVRGPLTVPGDVEGETVAVGSFQTGH
GRSADRNGGGDRERAESILSDDESRSTPAWQEEPEEQVVPGGSGEWGDGG
EVKHDRSRGSRGKKSQKRTRDWQEDQGRKRDRQEDQTPSRNKQEGHHARA
QRRPSQPHRRRQPVPDNVLPCTNPACKAKRKTHSSNICFYHPDPAQALRN
RMRRKDIFLKTHAMEDAGNDAGSGLHNNFDEPEF
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mRNA from alignment at Scaffold_618:940756..944295-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft882_9a-0001 ID=EsuBft882_9a-0001|Name=EsuBft882_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3540bp|location=Sequence derived from alignment at Scaffold_618:940756..944295- (Ectocarpus subulatus male Bft15b)
GAGGGCGGAAAGCCGCACCCCGGTGAGAAAAGTTGGCCTACGCAGCAGCA GCAACAGCCAATGACTCTCCGCGAGCAGCTCCAAAAACTCGTTTCGCAGA AACTCGCCGCAAAGGGTGAGCTTGACCATGCCGGGCTTTTGGCTTTGGAA ACGCTCAGCAAGATGGCACCGGAGGGCGAAGTGGATCCAGTTGGTGGATC ATCTGCTGGTGGTGGTGCTAGTGTTGGTGTTGTTGACTCTCGTCCTAGGA GAATCCTCCCGCCTGGCATCGAGAAATTGACGAAATTTAGCGGCAAGGAT CCTGGTGCTGTGTCCGACGTGCTCAACAGATTCCACTCCCTTGTCGTCGC GGCCCTGCCTGGCAGCTCGCCTGGCACAGTGAATAAGGCTCTGAACCGAG ATGTCGTGTTTGTCTTGGAGGGTGCAGCCCTGAAGTTCTTCAAATTGCTG AAAGCAGGACAGATAGAGTGGGAACCTACCCCGCCTCCCTCCCTCCAGCA GCGGGGGGCAGAGGCGGGAGCAGGGGGCGTTCAGCAACAACCAGGAAAGC CACCTTTCCGGCCCCCGTCGACCTGGGCTGAAGTCTACAATGCTTTCCAC GACCACTATCTGCCGGCGGATGGCATCGCACGGACATCAGACACACTATT TTCACTTCGCCAAGCTGCAGACGAATCCGTCCCGACGTTGGTCCAGCGAC AAATGGGCCTGACCAATCACTTGAGCCGGTTAATTGAAGCCAACGGGGGG CAGACAACTTTTTGGGAAGCAATCATGATACGGTTGTTCGAGAGAGCGCT CCGCGCCGACCTGCAGCGGCTTCAGCACGCGGAGCCTCCGTGCCCGACTT TTCAGGAAAGTGTTGACCGTGCAGATCGTAACGCTCTAAGATTGGAGAAG GAGAAGAGTAAGAGAAGGAATGATGCTGGCGAAGGAGGTGGCGGTGGAGA GCGTCCGCCAGAGGACAATCGACTTCGCCTCGGCACGAAACCGCAGGGCG GCAGCAGTGGTGTGGGAGAGGGGAAGGGAGGGGTGCAAAGTTCAGATGGT TCGAAAGGACCAGCGCTTGTCGGGTCTTCTTCATCGTTGGCCAGGGGTCC GCTGACCTTGTCGGGTACCTTTGAAGACGTGGCTCCTGTTGTAGGGGGCT TCCAGCCCCCACACGGGAAGACAGAGAAAAAACTTGGTGGAGGAGGCGCA GGAGAGGGACGTGAGGGTGATCGACTTCAGCACGGTAGTAAAACGCAGCG CAACAGTGACGTAGGAGATGGGAAGGAACTGGTGCACGGCTGGGGTGGCT TGAAGGGGGCAGCGCATGCCCGGTCTCCTTCTGTGGTCAGGGGTCCGCTT ACCGTGCCAGGTGACGTTGAAGGCGAAACTGTTGCTGTGGGGAGCTTCCA AACCGGACACGGGAGAAGTGCAGACCGAAACGGCGGTGGAGACCGGGAAA GGGCCGAGAGCATCTTGTCTGACGATGAGTCCCGATCCACCCCTGCTTGG CAAGAAGAGCCGGAAGAACAAGTAGTGCCTGGAGGATCTGGGGAGTGGGG CGATGGTGGTGAGGTCAAACACGATCGCAGCCGTGGGTCGCGAGGCAAGA AGTCTCAAAAGCGAACGCGGGATTGGCAAGAAGACCAGGGCCGCAAGCGG GACAGGCAAGAAGACCAGACCCCTTCGCGGAACAAGCAAGAAGGCCATCA TGCCCGTGCCCAGCGTCGTCCATCTCAGCCCCACCGGCGGCGGCAGCCAG TTCCCGACAACGTACTGCCGTGTACCAATCCAGCGTGCAAGGCGAAGCGA AAAACTCATTCTTCGAACATCTGTTTTTACCACCCAGACCCGGCACAAGC TCTACGAAACCGGATGAGAAGGAAAGACATATTCTTGAAGACCCATGCTA TGGAGGACGCGGGTAACGATGCGGGTAGTGGGCTCCACAACAATTTCGAC GAACCTGAGTTCTAGGGGGCGCTGAATCACCTCTACTGAACTTAAGGTGA GAGGGAAAAAATGGCTGCGACGATGTGTTGTGAAGCAGAGCAGGGTCAGG CGGATAAGGGGACTTACGCCGTTGGAGCATGATGAATGTCCTCAATTGGG CAGTTGGCTACGCGACAACATACATGACTTTCGTTCGTGTGAGTGCGACT ACGACTGTCACGGCGTTGACGAACCTCCGGCCAAAATGAGGAGGCCACGT CCTGTTGTCACGTTGCAGCAGAGAACTAGTGGCGCTCCCATTCGCGAGGT GGATTTTGCAAAGGAAGGATTCCCAAAAACTGTGAGGTTTCGGCATGGTG CAAAGGAAAAAACCTTTAAATTTCCCGGAAATTTCAGCGAAGTTGGCTGG CCCTGTTCTGTTTGCGCACGTCGTCACCGTTTGGCCTTGCCGTACTTTGT CAAGTCGCACACGTGCTTGGCTCTCTGTTTTGTTACAGATGTATTGAGTG ATGATTGAGACTGGCTTCGAGGTCAAACACAGCAACCGGCCGTCAACCGA ATACGATATGAATGCCTGACAACGCACCCTGCTGTCTTCTTTCGCATCTG CCCCCCATCTGCATGCACGCTTGTTCATGATGGACCCTACGACGAACAAA TTTTCAGTTTGGCAGGATGACGGATGGCCGTAGGCGCTAGCCGGGCAATT GAATATGGAACGAGAGGGCGTGGGTGAAAGGTCGAGACGGCTTCGCAACT TCCAGCACGGGTTTGTCGACGACCCATCGGGAGTCACCTTGATATCCGCA TAAGCGCGGTGCTTCGTGCATGCGTTTGTCGAAGGAGCAGTTGAAGGTCA ACCTCTACTCAAATGGCCGACACGTAGAGACAAGAGGACGGCGTAAAGGA TGATGGGCCAGCTTGCCGGCGTCAAAGCAGTGTTATTGGACCGATGTACG AAAGGAGACAATTGACGAGATTTCCCACATTTACCTGGACCGTTGTGCAC CAGAGTGTCGAAGGCGATCCTTCGTAGAAAAATCCTACGACTAGCGGCAT CGCAGAGACTTGGGGTCAAGGTCTGATGACCTCGATATTAAGCTCTAGTG GGATGTGCGCTTGTCACACGTGCAACAGCACAATGTGGCCTTCGCTGGGA GCCGTGCTCCCTTCTACGCGCTGGAATTTCGACTTTTGAGAAGTCTAACG GCATGTCCGCCGTTGTCATTACAAGTAGGGTCAGGGACCTTCGCGTTACA TAAGTTTCGCATGCCATAGCCTTATGGTGGAACTCCACTTCCCGTGTTGT CGGATGTACGTCGTATAGAAGTGGGATAATTCTACCGAACGTTTGATGAC GTGGTTGATCCGAAGAAACCTCCCTTGTATTTTTTAGTTTATACTTCGCA CCACTTTTGCTGTAGCCCTCGAAAGCACCGGCTGCCTTACAGGCAGCTAT GATTTGCATCGTGAGTTTCTGCCCAGACATATGTGTGCATGCATATTAAG AAGCTTGACCGGGTGACTGTGTGTGCGTGAATCGTTGCGTTGCAAATATG GGCAAAAATGCAACCATCTCGAGGACTGGGAAGATACGGC
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Coding sequence (CDS) from alignment at Scaffold_618:940756..944295-

>EsuBft882_9a-0001 ID=EsuBft882_9a-0001|Name=EsuBft882_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1905bp|location=Sequence derived from alignment at Scaffold_618:940756..944295- (Ectocarpus subulatus male Bft15b)
ATGACTCTCCGCGAGCAGCTCCAAAAACTCGTTTCGCAGAAACTCGCCGC
AAAGGGTGAGCTTGACCATGCCGGGCTTTTGGCTTTGGAAACGCTCAGCA
AGATGGCACCGGAGGGCGAAGTGGATCCAGTTGGTGGATCATCTGCTGGT
GGTGGTGCTAGTGTTGGTGTTGTTGACTCTCGTCCTAGGAGAATCCTCCC
GCCTGGCATCGAGAAATTGACGAAATTTAGCGGCAAGGATCCTGGTGCTG
TGTCCGACGTGCTCAACAGATTCCACTCCCTTGTCGTCGCGGCCCTGCCT
GGCAGCTCGCCTGGCACAGTGAATAAGGCTCTGAACCGAGATGTCGTGTT
TGTCTTGGAGGGTGCAGCCCTGAAGTTCTTCAAATTGCTGAAAGCAGGAC
AGATAGAGTGGGAACCTACCCCGCCTCCCTCCCTCCAGCAGCGGGGGGCA
GAGGCGGGAGCAGGGGGCGTTCAGCAACAACCAGGAAAGCCACCTTTCCG
GCCCCCGTCGACCTGGGCTGAAGTCTACAATGCTTTCCACGACCACTATC
TGCCGGCGGATGGCATCGCACGGACATCAGACACACTATTTTCACTTCGC
CAAGCTGCAGACGAATCCGTCCCGACGTTGGTCCAGCGACAAATGGGCCT
GACCAATCACTTGAGCCGGTTAATTGAAGCCAACGGGGGGCAGACAACTT
TTTGGGAAGCAATCATGATACGGTTGTTCGAGAGAGCGCTCCGCGCCGAC
CTGCAGCGGCTTCAGCACGCGGAGCCTCCGTGCCCGACTTTTCAGGAAAG
TGTTGACCGTGCAGATCGTAACGCTCTAAGATTGGAGAAGGAGAAGAGTA
AGAGAAGGAATGATGCTGGCGAAGGAGGTGGCGGTGGAGAGCGTCCGCCA
GAGGACAATCGACTTCGCCTCGGCACGAAACCGCAGGGCGGCAGCAGTGG
TGTGGGAGAGGGGAAGGGAGGGGTGCAAAGTTCAGATGGTTCGAAAGGAC
CAGCGCTTGTCGGGTCTTCTTCATCGTTGGCCAGGGGTCCGCTGACCTTG
TCGGGTACCTTTGAAGACGTGGCTCCTGTTGTAGGGGGCTTCCAGCCCCC
ACACGGGAAGACAGAGAAAAAACTTGGTGGAGGAGGCGCAGGAGAGGGAC
GTGAGGGTGATCGACTTCAGCACGGTAGTAAAACGCAGCGCAACAGTGAC
GTAGGAGATGGGAAGGAACTGGTGCACGGCTGGGGTGGCTTGAAGGGGGC
AGCGCATGCCCGGTCTCCTTCTGTGGTCAGGGGTCCGCTTACCGTGCCAG
GTGACGTTGAAGGCGAAACTGTTGCTGTGGGGAGCTTCCAAACCGGACAC
GGGAGAAGTGCAGACCGAAACGGCGGTGGAGACCGGGAAAGGGCCGAGAG
CATCTTGTCTGACGATGAGTCCCGATCCACCCCTGCTTGGCAAGAAGAGC
CGGAAGAACAAGTAGTGCCTGGAGGATCTGGGGAGTGGGGCGATGGTGGT
GAGGTCAAACACGATCGCAGCCGTGGGTCGCGAGGCAAGAAGTCTCAAAA
GCGAACGCGGGATTGGCAAGAAGACCAGGGCCGCAAGCGGGACAGGCAAG
AAGACCAGACCCCTTCGCGGAACAAGCAAGAAGGCCATCATGCCCGTGCC
CAGCGTCGTCCATCTCAGCCCCACCGGCGGCGGCAGCCAGTTCCCGACAA
CGTACTGCCGTGTACCAATCCAGCGTGCAAGGCGAAGCGAAAAACTCATT
CTTCGAACATCTGTTTTTACCACCCAGACCCGGCACAAGCTCTACGAAAC
CGGATGAGAAGGAAAGACATATTCTTGAAGACCCATGCTATGGAGGACGC
GGGTAACGATGCGGGTAGTGGGCTCCACAACAATTTCGACGAACCTGAGT
TCTAG
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